RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780862|ref|YP_003065275.1| NADH dehydrogenase subunit J
[Candidatus Liberibacter asiaticus str. psy62]
         (199 letters)



>2jvb_A Protein PSU1, mRNA-decapping enzyme subunit 2; DCP2, mRNA decay,
           cytoplasm, hydrolase, manganese, metal-binding, mRNA
           processing; NMR {Saccharomyces cerevisiae}
          Length = 146

 Score = 25.9 bits (56), Expect = 5.8
 Identities = 10/25 (40%), Positives = 17/25 (68%)

Query: 151 FILLLSMIGAIVLMLRHRRDIKRQD 175
           + L+ SM+  + + LRH+R IK +D
Sbjct: 122 YYLINSMMRPLSMWLRHQRQIKNED 146


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.333    0.147    0.408 

Gapped
Lambda     K      H
   0.267   0.0516    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,579,935
Number of extensions: 69069
Number of successful extensions: 266
Number of sequences better than 10.0: 1
Number of HSP's gapped: 264
Number of HSP's successfully gapped: 33
Length of query: 199
Length of database: 5,693,230
Length adjustment: 88
Effective length of query: 111
Effective length of database: 3,559,758
Effective search space: 395133138
Effective search space used: 395133138
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 54 (25.1 bits)