RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780862|ref|YP_003065275.1| NADH dehydrogenase subunit J [Candidatus Liberibacter asiaticus str. psy62] (199 letters) >2jvb_A Protein PSU1, mRNA-decapping enzyme subunit 2; DCP2, mRNA decay, cytoplasm, hydrolase, manganese, metal-binding, mRNA processing; NMR {Saccharomyces cerevisiae} Length = 146 Score = 25.9 bits (56), Expect = 5.8 Identities = 10/25 (40%), Positives = 17/25 (68%) Query: 151 FILLLSMIGAIVLMLRHRRDIKRQD 175 + L+ SM+ + + LRH+R IK +D Sbjct: 122 YYLINSMMRPLSMWLRHQRQIKNED 146 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.333 0.147 0.408 Gapped Lambda K H 0.267 0.0516 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 1,579,935 Number of extensions: 69069 Number of successful extensions: 266 Number of sequences better than 10.0: 1 Number of HSP's gapped: 264 Number of HSP's successfully gapped: 33 Length of query: 199 Length of database: 5,693,230 Length adjustment: 88 Effective length of query: 111 Effective length of database: 3,559,758 Effective search space: 395133138 Effective search space used: 395133138 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (22.0 bits) S2: 54 (25.1 bits)