Query gi|254780863|ref|YP_003065276.1| hypothetical protein CLIBASIA_03790 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 33
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Tue May 31 21:34:10 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780863.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zxe_G FXYD10, phospholemman-l 11.9 86 0.0036 13.8 1.8 12 9-20 24-35 (74)
2 2fhw_B Relaxin 3 (prorelaxin H 8.6 1.2E+02 0.0051 13.1 1.8 14 9-22 13-26 (27)
3 2jo1_A Phospholemman; FXYD1, N 7.4 1.4E+02 0.0059 12.8 1.8 12 9-20 21-32 (72)
4 1few_A Second mitochondria-der 6.0 1.7E+02 0.007 12.4 2.3 24 4-27 12-36 (184)
5 2ekk_A UBA domain from E3 ubiq 6.0 1E+02 0.0044 13.4 0.2 15 1-15 17-31 (47)
6 2jp3_A FXYD domain-containing 5.7 1.8E+02 0.0074 12.3 1.8 11 9-19 22-32 (67)
7 2kjf_A Carnocyclin-A; circular 5.4 1.7E+02 0.0071 12.4 0.9 20 11-30 24-48 (60)
8 2p1l_B Beclin 1; apoptosis, au 5.2 1.9E+02 0.0079 12.2 2.4 18 4-21 7-24 (31)
9 2kbc_B INSL5_B-chain; peptide 4.7 2E+02 0.0086 12.0 1.0 13 10-22 11-23 (26)
10 1btq_A BAND 3 anion transport 3.1 2.1E+02 0.009 11.9 -0.1 5 13-17 5-9 (26)
No 1
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=11.88 E-value=86 Score=13.76 Aligned_cols=12 Identities=58% Similarity=0.894 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHC
Q ss_conf 999999999916
Q gi|254780863|r 9 LIVSAVIFIIGS 20 (33)
Q Consensus 9 livsavifiigs 20 (33)
||..+|.|++|-
T Consensus 24 Li~a~vLf~~GI 35 (74)
T 2zxe_G 24 LIVAAVLCVIGI 35 (74)
T ss_dssp HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
T ss_conf 067999999999
No 2
>2fhw_B Relaxin 3 (prorelaxin H3) (insulin-like peptide INSL7) (insulin-like peptide 7); insulin/relaxin super-family fold, signaling protein; NMR {Synthetic} PDB: 2k1v_B*
Probab=8.61 E-value=1.2e+02 Score=13.08 Aligned_cols=14 Identities=43% Similarity=0.582 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHCCC
Q ss_conf 99999999991630
Q gi|254780863|r 9 LIVSAVIFIIGSSG 22 (33)
Q Consensus 9 livsavifiigssg 22 (33)
-...||||.-|+|-
T Consensus 13 efiraviftcggsr 26 (27)
T 2fhw_B 13 EFIRAVIFTCGGSR 26 (27)
T ss_dssp HHHHHHHHHHTSSC
T ss_pred HHHHHHEEECCCCC
T ss_conf 74654046226767
No 3
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=7.36 E-value=1.4e+02 Score=12.79 Aligned_cols=12 Identities=33% Similarity=1.007 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHC
Q ss_conf 999999999916
Q gi|254780863|r 9 LIVSAVIFIIGS 20 (33)
Q Consensus 9 livsavifiigs 20 (33)
||+.+|.|++|.
T Consensus 21 Li~a~vlf~~Gi 32 (72)
T 2jo1_A 21 LVIAGILFILGI 32 (72)
T ss_dssp HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
T ss_conf 245899999999
No 4
>1few_A Second mitochondria-derived activator of caspases; SMAC, diablo, apoptosis, caspase activation, IAP inhibition; 2.20A {Homo sapiens} SCOP: a.7.4.1
Probab=6.01 E-value=1.7e+02 Score=12.43 Aligned_cols=24 Identities=33% Similarity=0.403 Sum_probs=19.0
Q ss_pred HHHH-HHHHHHHHHHHHCCCHHHHH
Q ss_conf 0667-99999999999163099999
Q gi|254780863|r 4 GLSH-YLIVSAVIFIIGSSGVFLIV 27 (33)
Q Consensus 4 glsh-ylivsavifiigssgvfliv 27 (33)
.||| .||-.|+.....|+..||--
T Consensus 12 ~LShe~LIrrA~slv~DSasT~LSQ 36 (184)
T 1few_A 12 SLSSEALMRRAVSLVTDSTSTFLSQ 36 (184)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 5775999999999998049899999
No 5
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=5.99 E-value=1e+02 Score=13.39 Aligned_cols=15 Identities=20% Similarity=0.514 Sum_probs=11.3
Q ss_pred CCCHHHHHHHHHHHH
Q ss_conf 952066799999999
Q gi|254780863|r 1 MNIGLSHYLIVSAVI 15 (33)
Q Consensus 1 mniglshylivsavi 15 (33)
|..|.+||.++.|..
T Consensus 17 mDMGF~r~h~~eAL~ 31 (47)
T 2ekk_A 17 MDMGFTREHAMEALL 31 (47)
T ss_dssp HHHHCCHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHH
T ss_conf 983241999999998
No 6
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=5.65 E-value=1.8e+02 Score=12.32 Aligned_cols=11 Identities=36% Similarity=0.685 Sum_probs=8.2
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999991
Q gi|254780863|r 9 LIVSAVIFIIG 19 (33)
Q Consensus 9 livsavifiig 19 (33)
||..+|.|+.|
T Consensus 22 Li~a~vlf~~G 32 (67)
T 2jp3_A 22 LIFGGLLCIAG 32 (67)
T ss_dssp HHHHHHHHHHH
T ss_pred CHHHHHHHHHH
T ss_conf 15799999999
No 7
>2kjf_A Carnocyclin-A; circular bacteriocin, antimicrobial peptide, solution helical, saposin-fold, antibiotic, antimicrobial, bacteriocin; NMR {Carnobacterium maltaromaticum}
Probab=5.39 E-value=1.7e+02 Score=12.40 Aligned_cols=20 Identities=50% Similarity=0.718 Sum_probs=13.2
Q ss_pred HHHHHHHH-----HCCCHHHHHHHH
Q ss_conf 99999999-----163099999998
Q gi|254780863|r 11 VSAVIFII-----GSSGVFLIVKVL 30 (33)
Q Consensus 11 vsavifii-----gssgvflivkvl 30 (33)
|...|-|. |-||||--||.-
T Consensus 24 vgsiisilggvtvglsgvftavkaa 48 (60)
T 2kjf_A 24 VGSIISILGGVTVGLSGVFTAVKAA 48 (60)
T ss_dssp HHHHHHHHCSSCTTTHHHHHHHHHH
T ss_pred HHHHHHHHCCCEECHHHHHHHHHHH
T ss_conf 6678876547255003579999999
No 8
>2p1l_B Beclin 1; apoptosis, autophagy, BH3 domain, BCL; 2.50A {Homo sapiens} PDB: 3dvu_C 2pon_A
Probab=5.22 E-value=1.9e+02 Score=12.18 Aligned_cols=18 Identities=39% Similarity=0.351 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHCC
Q ss_conf 066799999999999163
Q gi|254780863|r 4 GLSHYLIVSAVIFIIGSS 21 (33)
Q Consensus 4 glshylivsavifiigss 21 (33)
.+||-+-|++-.|-|-|.
T Consensus 7 nlS~RlKvts~LFDiMSG 24 (31)
T 2p1l_B 7 NLSRRLKVTGDLFDIMSG 24 (31)
T ss_dssp HHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHHCC
T ss_conf 345555458888888638
No 9
>2kbc_B INSL5_B-chain; peptide hormone, relaxin, insulin-like fold; HET: PCA; NMR {Synthetic}
Probab=4.67 E-value=2e+02 Score=12.01 Aligned_cols=13 Identities=38% Similarity=0.567 Sum_probs=9.8
Q ss_pred HHHHHHHHHHCCC
Q ss_conf 9999999991630
Q gi|254780863|r 10 IVSAVIFIIGSSG 22 (33)
Q Consensus 10 ivsavifiigssg 22 (33)
-+..||+|-.||.
T Consensus 11 yirtviyicassr 23 (26)
T 2kbc_B 11 YIRTVIYICASSR 23 (26)
T ss_dssp HHHHHHHHHHHHH
T ss_pred EEEEEEEEEEECC
T ss_conf 2567889973030
No 10
>1btq_A BAND 3 anion transport protein; NMR {} SCOP: j.35.1.1 PDB: 1btr_A
Probab=3.06 E-value=2.1e+02 Score=11.93 Aligned_cols=5 Identities=100% Similarity=1.384 Sum_probs=0.0
Q ss_pred HHHHH
Q ss_conf 99999
Q gi|254780863|r 13 AVIFI 17 (33)
Q Consensus 13 avifi 17 (33)
|||||
T Consensus 5 avifi 9 (26)
T 1btq_A 5 AVIFI 9 (26)
T ss_pred EEHHH
T ss_conf 30488
Done!