Query gi|254780863|ref|YP_003065276.1| hypothetical protein CLIBASIA_03790 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 33
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 13730
Date Wed Jun 1 10:12:17 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780863.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 g6rlx.1 g.1.1.1 (B:,A:) Relaxi 1.9 2.5E+02 0.018 10.5 1.4 15 8-22 12-26 (51)
2 d1vk8a_ d.58.48.1 (A:) Hypothe 1.5 3.1E+02 0.023 10.0 2.3 20 4-23 15-34 (93)
3 d1rh5c_ f.23.29.1 (C:) Sec-bet 1.4 3.4E+02 0.024 9.9 0.7 16 18-33 14-29 (32)
4 d1scfa_ a.26.1.2 (A:) Stem cel 1.2 3.8E+02 0.028 9.6 1.6 16 4-19 59-74 (131)
5 g1mso.1 g.1.1.1 (B:,A:) Insuli 1.2 4E+02 0.029 9.6 0.3 15 10-24 11-25 (51)
6 d1jmsa3 a.60.12.1 (A:243-302) 1.2 4.1E+02 0.03 9.5 0.2 6 3-8 49-54 (60)
7 d1yqha1 d.58.48.1 (A:1-101) Hy 1.1 4.1E+02 0.03 9.5 1.0 20 4-23 17-36 (101)
8 d1x4na1 d.51.1.1 (A:8-86) Far 1.1 4.1E+02 0.03 9.5 2.0 15 11-25 16-30 (79)
9 d1g73a_ a.7.4.1 (A:) Smac/diab 1.1 4.1E+02 0.03 9.5 2.2 20 6-25 15-34 (157)
10 d1kaga_ c.37.1.2 (A:) Shikimat 1.1 95 0.0069 12.5 -3.4 9 15-23 5-13 (169)
No 1
>g6rlx.1 g.1.1.1 (B:,A:) Relaxin {Human (Homo sapiens) [TaxId: 9606]}
Probab=1.91 E-value=2.5e+02 Score=10.49 Aligned_cols=15 Identities=40% Similarity=0.295 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHCCC
Q ss_conf 999999999991630
Q gi|254780863|r 8 YLIVSAVIFIIGSSG 22 (33)
Q Consensus 8 ylivsavifiigssg 22 (33)
--.|.+.|.|-|+|-
T Consensus 12 Re~vR~qi~iCG~s~ 26 (51)
T g6rlx.1 12 RELVRAQIAICGMST 26 (51)
T ss_dssp HHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHCCCH
T ss_conf 999999998626623
No 2
>d1vk8a_ d.58.48.1 (A:) Hypothetical protein TM0486 {Thermotoga maritima [TaxId: 2336]}
Probab=1.45 E-value=3.1e+02 Score=10.04 Aligned_cols=20 Identities=20% Similarity=0.074 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHCCCH
Q ss_conf 06679999999999916309
Q gi|254780863|r 4 GLSHYLIVSAVIFIIGSSGV 23 (33)
Q Consensus 4 glshylivsavifiigssgv 23 (33)
|-|-+-.|.++|-+|-.||+
T Consensus 15 ~~s~s~~V~~~i~~i~~sGl 34 (93)
T d1vk8a_ 15 DGRLHEVIDRAIEKISSWGM 34 (93)
T ss_dssp GGGHHHHHHHHHHHHHTTCS
T ss_pred CCCHHHHHHHHHHHHHHCCC
T ss_conf 98478999999999997499
No 3
>d1rh5c_ f.23.29.1 (C:) Sec-beta subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=1.37 E-value=3.4e+02 Score=9.91 Aligned_cols=16 Identities=38% Similarity=0.823 Sum_probs=7.5
Q ss_pred HHCCCHHHHHHHHHCC
Q ss_conf 9163099999998619
Q gi|254780863|r 18 IGSSGVFLIVKVLLRY 33 (33)
Q Consensus 18 igssgvflivkvllry 33 (33)
||-.-.|.|....|.|
T Consensus 14 igvtvafviieailty 29 (32)
T d1rh5c_ 14 IGVTVAFVIIEAILTY 29 (32)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred EEEEEEHHHHHHHHHH
T ss_conf 8787713438888750
No 4
>d1scfa_ a.26.1.2 (A:) Stem cell factor, SCF {Human (Homo sapiens) [TaxId: 9606]}
Probab=1.21 E-value=3.8e+02 Score=9.63 Aligned_cols=16 Identities=38% Similarity=0.748 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 0667999999999991
Q gi|254780863|r 4 GLSHYLIVSAVIFIIG 19 (33)
Q Consensus 4 glshylivsavifiig 19 (33)
|||.|.|.+-.+-|+.
T Consensus 59 ~~sN~siI~~l~~il~ 74 (131)
T d1scfa_ 59 GLSNYSIIDKLVNIVD 74 (131)
T ss_dssp SCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
T ss_conf 3120889999999999
No 5
>g1mso.1 g.1.1.1 (B:,A:) Insulin {Human (Homo sapiens) [TaxId: 9606]}
Probab=1.18 E-value=4e+02 Score=9.57 Aligned_cols=15 Identities=33% Similarity=0.760 Sum_probs=0.0
Q ss_pred HHHHHHHHHHCCCHH
Q ss_conf 999999999163099
Q gi|254780863|r 10 IVSAVIFIIGSSGVF 24 (33)
Q Consensus 10 ivsavifiigssgvf 24 (33)
.|.|.-|+-|..|.|
T Consensus 11 LVdaL~~vCg~rGf~ 25 (51)
T g1mso.1 11 LVEALYLVCGERGFF 25 (51)
T ss_dssp HHHHHHHHHGGGCEE
T ss_pred HHHHHHHHHCCCCCC
T ss_conf 999999998468864
No 6
>d1jmsa3 a.60.12.1 (A:243-302) Terminal deoxynucleotidyl transferase {Mouse (Mus musculus) [TaxId: 10090]}
Probab=1.15 E-value=4.1e+02 Score=9.51 Aligned_cols=6 Identities=33% Similarity=0.628 Sum_probs=0.0
Q ss_pred CHHHHH
Q ss_conf 206679
Q gi|254780863|r 3 IGLSHY 8 (33)
Q Consensus 3 iglshy 8 (33)
|||.||
T Consensus 49 iGLkyy 54 (60)
T d1jmsa3 49 AGFLYY 54 (60)
T ss_dssp HHHHTH
T ss_pred HHHHHH
T ss_conf 989999
No 7
>d1yqha1 d.58.48.1 (A:1-101) Hypothetical protein BC0424 {Bacillus cereus [TaxId: 1396]}
Probab=1.15 E-value=4.1e+02 Score=9.50 Aligned_cols=20 Identities=30% Similarity=0.424 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHCCCH
Q ss_conf 06679999999999916309
Q gi|254780863|r 4 GLSHYLIVSAVIFIIGSSGV 23 (33)
Q Consensus 4 glshylivsavifiigssgv 23 (33)
|-|-+-.|.++|-+|-.||+
T Consensus 17 ~~s~~~~V~~~i~~i~~sGl 36 (101)
T d1yqha1 17 TKDVYSVVDKAIEVVQQSGV 36 (101)
T ss_dssp SSCHHHHHHHHHHHHHHSCS
T ss_pred CCCHHHHHHHHHHHHHHCCC
T ss_conf 99679999999999997499
No 8
>d1x4na1 d.51.1.1 (A:8-86) Far upstream binding element, FBP {Mouse (Mus musculus) [TaxId: 10090]}
Probab=1.15 E-value=4.1e+02 Score=9.49 Aligned_cols=15 Identities=40% Similarity=0.499 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCHHH
Q ss_conf 999999991630999
Q gi|254780863|r 11 VSAVIFIIGSSGVFL 25 (33)
Q Consensus 11 vsavifiigssgvfl 25 (33)
.+.+-++||..|-.+
T Consensus 16 ~~~~g~iIG~~G~~i 30 (79)
T d1x4na1 16 DGMVGFIIGRGGEQI 30 (79)
T ss_dssp HHHHHHHHCSSSHHH
T ss_pred HHHHCCEECCCCHHH
T ss_conf 675030289794148
No 9
>d1g73a_ a.7.4.1 (A:) Smac/diablo {Human (Homo sapiens) [TaxId: 9606]}
Probab=1.14 E-value=4.1e+02 Score=9.48 Aligned_cols=20 Identities=30% Similarity=0.283 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHCCCHHH
Q ss_conf 67999999999991630999
Q gi|254780863|r 6 SHYLIVSAVIFIIGSSGVFL 25 (33)
Q Consensus 6 shylivsavifiigssgvfl 25 (33)
+.+||-.|+.....|+..||
T Consensus 15 he~LIrrA~slv~DSast~L 34 (157)
T d1g73a_ 15 SEALMRRAVSLVTDSTSTDL 34 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
T ss_conf 59999999999982398899
No 10
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}
Probab=1.11 E-value=95 Score=12.46 Aligned_cols=9 Identities=44% Similarity=1.080 Sum_probs=0.0
Q ss_pred HHHHHCCCH
Q ss_conf 999916309
Q gi|254780863|r 15 IFIIGSSGV 23 (33)
Q Consensus 15 ifiigssgv 23 (33)
||++|.+|+
T Consensus 5 I~l~G~~Gs 13 (169)
T d1kaga_ 5 IFLVGPMGA 13 (169)
T ss_dssp EEEECCTTS
T ss_pred EEEECCCCC
T ss_conf 999899999
Done!