Query gi|254780864|ref|YP_003065277.1| NADH-ubiquinone oxidoreductase, chain 4L [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 68
No_of_seqs 104 out of 813
Neff 4.9
Searched_HMMs 23785
Date Tue May 31 22:56:25 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780864.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2k2w_A Recombination and DNA r 10.6 83 0.0035 12.7 1.6 11 39-49 97-107 (118)
2 1z8y_J Spike glycoprotein E2; 8.5 1E+02 0.0042 12.2 2.8 20 32-51 5-24 (36)
3 1v54_M VIIIB, IX, cytochrome C 7.2 1.2E+02 0.0049 11.9 2.6 15 37-51 11-25 (46)
4 1k8k_G P16, ARP2/3 complex 16 3.9 1.3E+02 0.0054 11.7 -0.6 16 43-58 136-151 (151)
5 2pq4_B Periplasmic nitrate red 3.6 2.1E+02 0.0088 10.6 0.4 13 34-46 12-24 (35)
6 2k21_A Potassium voltage-gated 3.3 2.3E+02 0.0095 10.4 2.7 33 25-57 48-80 (138)
7 2xnd_J ATP synthase lipid-bind 2.6 2.7E+02 0.011 10.0 0.1 30 22-51 39-68 (72)
8 2c9l_Y EB1, zebra, BZLF1 trans 2.6 2.8E+02 0.012 9.9 4.4 30 34-63 28-57 (63)
9 1pi7_A VPU protein, U ORF prot 2.6 2.8E+02 0.012 9.9 1.5 16 35-50 7-22 (36)
10 2x2v_A ATP synthase subunit C; 2.5 2.8E+02 0.012 9.9 5.9 32 21-52 35-66 (69)
No 1
>2k2w_A Recombination and DNA repair protein; BRCT domain, cell cycle checkpoint; NMR {Xenopus laevis}
Probab=10.59 E-value=83 Score=12.67 Aligned_cols=11 Identities=45% Similarity=0.770 Sum_probs=8.4
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999999
Q gi|254780864|r 39 AETSIGLAILV 49 (68)
Q Consensus 39 aEaAiGLAi~v 49 (68)
-|+-||||++-
T Consensus 97 pEsEIGLAvi~ 107 (118)
T 2k2w_A 97 PEAEIGLAVIN 107 (118)
T ss_dssp EHHHHHHHHHH
T ss_pred CHHHHHHHHEE
T ss_conf 87886254312
No 2
>1z8y_J Spike glycoprotein E2; icosahedral enveloped virus, cryo-electron microscopy, icosahedral virus; 9.00A {Sindbis virus}
Probab=8.53 E-value=1e+02 Score=12.23 Aligned_cols=20 Identities=30% Similarity=0.363 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999
Q gi|254780864|r 32 FILLVAAAETSIGLAILVIF 51 (68)
Q Consensus 32 fil~iAAaEaAiGLAi~v~~ 51 (68)
-++++|++..|+-++.-++.
T Consensus 5 ti~~~a~at~a~~~gvsva~ 24 (36)
T 1z8y_J 5 TILAVASATVAMMIGVTVAV 24 (36)
T ss_dssp HHHHHHHHHTHHHHHHHHHH
T ss_pred EEHHHHHHHHHHHHHHHHHH
T ss_conf 10699988999999589999
No 3
>1v54_M VIIIB, IX, cytochrome C oxidase polypeptide VIII-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.7.1 PDB: 1oco_M* 1occ_M* 1ocz_M* 1ocr_M* 1v55_M* 2dyr_M* 2dys_M* 2eij_M* 2eik_M* 2eil_M* 2eim_M* 2ein_M* 2occ_M* 2zxw_M* 3abk_M* 3abl_M* 3abm_M* 3ag1_M* 3ag2_M* 3ag3_M* ...
Probab=7.23 E-value=1.2e+02 Score=11.90 Aligned_cols=15 Identities=27% Similarity=0.519 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 999999999999999
Q gi|254780864|r 37 AAAETSIGLAILVIF 51 (68)
Q Consensus 37 AAaEaAiGLAi~v~~ 51 (68)
.++|.+|||..+...
T Consensus 11 s~~E~aiglt~~f~~ 25 (46)
T 1v54_M 11 SPKEQAIGLSVTFLS 25 (46)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
T ss_conf 799999999999999
No 4
>1k8k_G P16, ARP2/3 complex 16 kDa subunit, P16-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: a.118.13.1 PDB: 1tyq_G* 1u2v_G* 2p9i_G* 2p9k_G* 2p9l_G 2p9n_G* 2p9p_G* 2p9s_G* 2p9u_G* 3dxk_G* 3dxm_G*
Probab=3.87 E-value=1.3e+02 Score=11.67 Aligned_cols=16 Identities=13% Similarity=0.152 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHCCCC
Q ss_conf 9999999999721785
Q gi|254780864|r 43 IGLAILVIFYRKCGSI 58 (68)
Q Consensus 43 iGLAi~v~~yR~~~si 58 (68)
-|++-++...-.|+++
T Consensus 136 ~G~G~IvRvltdRrtV 151 (151)
T 1k8k_G 136 GGVGSIVRVLTARKTV 151 (151)
T ss_dssp HHHHHHHHHHTCSCC-
T ss_pred CCCCCEEEEECCCCCC
T ss_conf 4987368885156429
No 5
>2pq4_B Periplasmic nitrate reductase precursor; NAPD/NAPA1-35, mixed beta-alpha sandwich structure, protein- peptide complex, alpha-helix; NMR {Escherichia coli}
Probab=3.58 E-value=2.1e+02 Score=10.57 Aligned_cols=13 Identities=46% Similarity=0.488 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999999999
Q gi|254780864|r 34 LLVAAAETSIGLA 46 (68)
Q Consensus 34 l~iAAaEaAiGLA 46 (68)
-++||+.++-||+
T Consensus 12 navaaaaaaagls 24 (35)
T 2pq4_B 12 NAVAAAAAAAGLS 24 (35)
T ss_dssp HHHHHHHHHHCCC
T ss_pred CCEEECCCCCCCC
T ss_conf 3101102235655
No 6
>2k21_A Potassium voltage-gated channel subfamily E member; KCNE1, membrane protein, potassium channel, MINK, auxilliary subunit, micelles, ION transport; NMR {Homo sapiens}
Probab=3.25 E-value=2.3e+02 Score=10.39 Aligned_cols=33 Identities=21% Similarity=0.351 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 159999999999999999999999999972178
Q gi|254780864|r 25 SGQIFSLFILLVAAAETSIGLAILVIFYRKCGS 57 (68)
Q Consensus 25 ~Gqi~~lfil~iAAaEaAiGLAi~v~~yR~~~s 57 (68)
+|+.-.+||+.+-.-=+..-++|++.+.|.|+-
T Consensus 48 d~~~~~lYIL~vmgffgff~~gImlsyiRSKk~ 80 (138)
T 2k21_A 48 DGKLEALYVLMVLGFFGFFTLGIMLSYIRSKKL 80 (138)
T ss_dssp TCSSTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 985226799999999999999999987788750
No 7
>2xnd_J ATP synthase lipid-binding protein, mitochondrial; ATP phosphorylase (H+ transporting), ATP synthesis, F1FO ATP synthase, hydrolase, ION transport; HET: ANP; 3.50A {Bos taurus}
Probab=2.59 E-value=2.7e+02 Score=9.95 Aligned_cols=30 Identities=30% Similarity=0.359 Sum_probs=25.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 783159999999999999999999999999
Q gi|254780864|r 22 QDISGQIFSLFILLVAAAETSIGLAILVIF 51 (68)
Q Consensus 22 ~~~~Gqi~~lfil~iAAaEaAiGLAi~v~~ 51 (68)
.+..++++...++..|=+|+.-=.++++++
T Consensus 39 Pe~~~~i~~~~~lG~Al~Ea~ai~alvva~ 68 (72)
T 2xnd_J 39 PSLKQQLFSYAILGFALSEAMGLFCLMVAF 68 (72)
T ss_dssp SCCCCCCSSTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 568986999999999999999999999999
No 8
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=2.57 E-value=2.8e+02 Score=9.93 Aligned_cols=30 Identities=30% Similarity=0.377 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf 999999999999999999972178579999
Q gi|254780864|r 34 LLVAAAETSIGLAILVIFYRKCGSISVDDF 63 (68)
Q Consensus 34 l~iAAaEaAiGLAi~v~~yR~~~si~~d~~ 63 (68)
-++||+.+.-.=-+-+.+-..-.|+|+|.+
T Consensus 28 r~vaaaks~en~rlr~l~kqmcpsldvdsi 57 (63)
T 2c9l_Y 28 REVAAAKSSENDRLRLLLKQMCPSLDVDSI 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTCCHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHCCCCCCCCC
T ss_conf 999975024004999999985875461104
No 9
>1pi7_A VPU protein, U ORF protein; alpha helix, viral protein; NMR {Human immunodeficiency virus 1} SCOP: j.35.1.1 PDB: 1pi8_A 1pje_A 2gof_A 2goh_A 2jpx_A
Probab=2.56 E-value=2.8e+02 Score=9.93 Aligned_cols=16 Identities=31% Similarity=0.304 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999
Q gi|254780864|r 35 LVAAAETSIGLAILVI 50 (68)
Q Consensus 35 ~iAAaEaAiGLAi~v~ 50 (68)
++.|--+||=+||++.
T Consensus 7 aivalvvaii~aivvw 22 (36)
T 1pi7_A 7 AIVALVVAIIIAIVVW 22 (36)
T ss_pred EHHHHHHHHHHHHHHE
T ss_conf 1999999999998620
No 10
>2x2v_A ATP synthase subunit C; membrane protein, ION transport, ATP synthesis, transmembran CF(0), membrane, transport, C-ring rotor; HET: FME DPV; 2.50A {Bacillus pseudofirmus OF4}
Probab=2.54 E-value=2.8e+02 Score=9.90 Aligned_cols=32 Identities=22% Similarity=0.342 Sum_probs=26.0
Q ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 37831599999999999999999999999999
Q gi|254780864|r 21 MQDISGQIFSLFILLVAAAETSIGLAILVIFY 52 (68)
Q Consensus 21 ~~~~~Gqi~~lfil~iAAaEaAiGLAi~v~~y 52 (68)
..+..|++++-+++..|=+|+.-=.++++++.
T Consensus 35 qPe~~g~l~~~m~ig~al~Ea~~i~~lvia~l 66 (69)
T 2x2v_A 35 QPELRGTLQTLMFIGVPLAEAVPIIAIVISLL 66 (69)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 90277619999999999999999999999999
Done!