RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780864|ref|YP_003065277.1| NADH-ubiquinone
oxidoreductase, chain 4L [Candidatus Liberibacter asiaticus str.
psy62]
         (68 letters)



>gnl|CDD|31057 COG0713, NuoK, NADH:ubiquinone oxidoreductase subunit 11 or 4L
           (chain K) [Energy production and conversion].
          Length = 100

 Score = 72.8 bits (179), Expect = 2e-14
 Identities = 40/68 (58%), Positives = 58/68 (85%)

Query: 1   MSIELMLLAVNLNMISFSAYMQDISGQIFSLFILLVAAAETSIGLAILVIFYRKCGSISV 60
           MSIELML AVNLN ++FS+Y+ D+ GQ+F++F++ VAAAE ++GLAILV  YR+ G+I++
Sbjct: 33  MSIELMLNAVNLNFVAFSSYLGDLDGQVFAIFVITVAAAEAAVGLAILVALYRRRGTINI 92

Query: 61  DDFNQMKG 68
           DD N+M+G
Sbjct: 93  DDLNEMRG 100


>gnl|CDD|176958 CHL00015, ndhE, NADH dehydrogenase subunit 4L.
          Length = 101

 Score = 64.3 bits (157), Expect = 7e-12
 Identities = 29/69 (42%), Positives = 46/69 (66%), Gaps = 2/69 (2%)

Query: 1   MSIELMLLAVNLNMISFSAYM--QDISGQIFSLFILLVAAAETSIGLAILVIFYRKCGSI 58
           M +EL+L AVN+N ++FS +   + + G IFS+F++ +AAAE +IGLAI+   YR   S 
Sbjct: 32  MCLELILNAVNINFVTFSDFFDSRQLKGDIFSIFVIAIAAAEAAIGLAIVSSIYRNRKST 91

Query: 59  SVDDFNQMK 67
            ++  N +K
Sbjct: 92  RINQSNLLK 100


>gnl|CDD|177231 MTH00180, ND4L, NADH dehydrogenase subunit 4L; Provisional.
          Length = 99

 Score = 62.7 bits (153), Expect = 2e-11
 Identities = 36/68 (52%), Positives = 51/68 (75%)

Query: 1  MSIELMLLAVNLNMISFSAYMQDISGQIFSLFILLVAAAETSIGLAILVIFYRKCGSISV 60
          MSIELMLLA++L  +  S  + ++ GQIF++ IL VAAAE++IGLAILV +YR  G+I+V
Sbjct: 32 MSIELMLLAISLLFLINSVAIDNLIGQIFTIMILTVAAAESAIGLAILVAYYRIRGTIAV 91

Query: 61 DDFNQMKG 68
             N ++G
Sbjct: 92 KSLNLLRG 99


>gnl|CDD|144131 pfam00420, Oxidored_q2, NADH-ubiquinone/plastoquinone
          oxidoreductase chain 4L. 
          Length = 96

 Score = 59.8 bits (146), Expect = 1e-10
 Identities = 25/68 (36%), Positives = 40/68 (58%)

Query: 1  MSIELMLLAVNLNMISFSAYMQDISGQIFSLFILLVAAAETSIGLAILVIFYRKCGSISV 60
          + +ELM+L++ L ++ FS  + D   Q   L +L+ AA E ++GLA+LV  YR  G+  V
Sbjct: 29 LCLELMMLSLFLLLVLFSLLLADPLPQALPLTLLVFAACEAALGLALLVALYRTHGTDDV 88

Query: 61 DDFNQMKG 68
             N +K 
Sbjct: 89 QSLNLLKC 96


>gnl|CDD|177099 MTH00001, ND4L, NADH dehydrogenase subunit 4L; Provisional.
          Length = 99

 Score = 51.6 bits (124), Expect = 4e-08
 Identities = 28/68 (41%), Positives = 45/68 (66%)

Query: 1  MSIELMLLAVNLNMISFSAYMQDISGQIFSLFILLVAAAETSIGLAILVIFYRKCGSISV 60
          +SIEL+LL+     +  S  +  +  QIF++  L +AAAE++IGLAI+V +YR  G+IS+
Sbjct: 32 VSIELVLLSTFFLFLINSIEIDLLIEQIFTIMGLTIAAAESAIGLAIMVAYYRIRGTISL 91

Query: 61 DDFNQMKG 68
             N ++G
Sbjct: 92 KSLNSLRG 99


>gnl|CDD|177240 MTH00192, ND4L, NADH dehydrogenase subunit 4L; Provisional.
          Length = 99

 Score = 49.5 bits (118), Expect = 2e-07
 Identities = 33/68 (48%), Positives = 51/68 (75%)

Query: 1  MSIELMLLAVNLNMISFSAYMQDISGQIFSLFILLVAAAETSIGLAILVIFYRKCGSISV 60
          MSIEL+LLA++  +I +S  + ++ G IFSL +L VAAAE++IGLAILV ++R  G+I++
Sbjct: 32 MSIELILLAISYLLIVYSVTLDNLLGIIFSLMVLTVAAAESAIGLAILVAYFRLTGTITI 91

Query: 61 DDFNQMKG 68
             N ++G
Sbjct: 92 KALNLLRG 99


>gnl|CDD|39868 KOG4669, KOG4669, KOG4669, NADH dehydrogenase subunit 4L and
           related proteins [Energy production and conversion].
          Length = 100

 Score = 42.1 bits (99), Expect = 3e-05
 Identities = 32/68 (47%), Positives = 46/68 (67%)

Query: 1   MSIELMLLAVNLNMISFSAYMQDISGQIFSLFILLVAAAETSIGLAILVIFYRKCGSISV 60
           M +E MLLAVN N + F+    D+ GQ+F++ +L  AAAE +IGLAILV  +R  G+I V
Sbjct: 33  MCLESMLLAVNSNFLFFTLSSDDMMGQVFAILVLTFAAAEAAIGLAILVSIFRTRGTIYV 92

Query: 61  DDFNQMKG 68
           +  N ++G
Sbjct: 93  EFINLLQG 100


>gnl|CDD|177118 MTH00043, ND4L, NADH dehydrogenase subunit 4L; Validated.
          Length = 98

 Score = 30.3 bits (69), Expect = 0.13
 Identities = 22/67 (32%), Positives = 40/67 (59%)

Query: 1  MSIELMLLAVNLNMISFSAYMQDISGQIFSLFILLVAAAETSIGLAILVIFYRKCGSISV 60
          + +EL+L+++ LN+  +S    + S   FSL +L ++A E SIGL+++V+  R   S  V
Sbjct: 31 LCLELLLISLFLNISIWSLNYGNFSNLSFSLLLLTLSACEASIGLSLMVLLSRNHNSDLV 90

Query: 61 DDFNQMK 67
             N ++
Sbjct: 91 ASLNLLQ 97


>gnl|CDD|177184 MTH00125, ND4L, NADH dehydrogenase subunit 4L; Provisional.
          Length = 98

 Score = 27.9 bits (63), Expect = 0.61
 Identities = 16/57 (28%), Positives = 28/57 (49%)

Query: 1  MSIELMLLAVNLNMISFSAYMQDISGQIFSLFILLVAAAETSIGLAILVIFYRKCGS 57
          + +E M+L++ + +  +    Q  S     + +L  +A E   GLA+LV   R  GS
Sbjct: 31 LCLESMMLSLFIMLSLWPITTQTPSFTPMPIILLTFSACEAGTGLALLVATTRTHGS 87


>gnl|CDD|177206 MTH00149, ND4L, NADH dehydrogenase subunit 4L; Provisional.
          Length = 97

 Score = 27.9 bits (63), Expect = 0.67
 Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 2/66 (3%)

Query: 2  SIELMLLAVNLNMISFSAYMQDISGQIFSLFILLVAAAETSIGLAILVIFYRKCGSISVD 61
          S+E ++L++ L M+  S+ +   S  +F L IL   A E S+GL++LV   R  G+  V 
Sbjct: 33 SLEALMLSL-LVMMFSSSGLISFSSYLF-LIILTFGACEASLGLSLLVSLIRLHGNDYVS 90

Query: 62 DFNQMK 67
            + +K
Sbjct: 91 SLSSLK 96


>gnl|CDD|177232 MTH00181, ND4L, NADH dehydrogenase subunit 4L; Provisional.
          Length = 93

 Score = 25.7 bits (57), Expect = 2.6
 Identities = 21/62 (33%), Positives = 32/62 (51%)

Query: 3  IELMLLAVNLNMISFSAYMQDISGQIFSLFILLVAAAETSIGLAILVIFYRKCGSISVDD 62
          +E M+L + L +  FS      S  +F L +L  +A E  +GL++LV   R  GS  +  
Sbjct: 30 LEGMMLFLFLLLALFSLLSSSSSMLMFGLILLTFSACEAVLGLSLLVATNRTHGSDHLLK 89

Query: 63 FN 64
          FN
Sbjct: 90 FN 91


>gnl|CDD|177237 MTH00188, ND4L, NADH dehydrogenase subunit 4L; Provisional.
          Length = 97

 Score = 25.7 bits (57), Expect = 3.1
 Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 2/67 (2%)

Query: 1  MSIELMLLAVNLNMISFSAYMQDISGQIFSLFILLVAAAETSIGLAILVIFYRKCGSISV 60
          +S+E ++L++   ++   +YM+       SL +L  AA E S+GLA+LV   R  GS  V
Sbjct: 32 LSLEAIMLSLFWFLLVGLSYME--KELYLSLVLLTFAACEASVGLALLVSLIRSHGSDYV 89

Query: 61 DDFNQMK 67
             N +K
Sbjct: 90 SSLNLIK 96


>gnl|CDD|177139 MTH00067, ND4L, NADH dehydrogenase subunit 4L; Provisional.
          Length = 98

 Score = 24.6 bits (54), Expect = 7.2
 Identities = 16/55 (29%), Positives = 31/55 (56%)

Query: 3  IELMLLAVNLNMISFSAYMQDISGQIFSLFILLVAAAETSIGLAILVIFYRKCGS 57
          +E M+L++ + +  +S   + +S     +F+L  +A E S GLA++V   R  G+
Sbjct: 33 LEGMMLSLFIALSLWSTQFESLSYFSLPMFMLTFSACEASTGLALMVATTRTHGT 87


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.330    0.141    0.381 

Gapped
Lambda     K      H
   0.267   0.0840    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 727,464
Number of extensions: 29687
Number of successful extensions: 165
Number of sequences better than 10.0: 1
Number of HSP's gapped: 163
Number of HSP's successfully gapped: 27
Length of query: 68
Length of database: 6,263,737
Length adjustment: 39
Effective length of query: 29
Effective length of database: 5,420,986
Effective search space: 157208594
Effective search space used: 157208594
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 51 (23.2 bits)