RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780864|ref|YP_003065277.1| NADH-ubiquinone oxidoreductase, chain 4L [Candidatus Liberibacter asiaticus str. psy62] (68 letters) >gnl|CDD|31057 COG0713, NuoK, NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) [Energy production and conversion]. Length = 100 Score = 72.8 bits (179), Expect = 2e-14 Identities = 40/68 (58%), Positives = 58/68 (85%) Query: 1 MSIELMLLAVNLNMISFSAYMQDISGQIFSLFILLVAAAETSIGLAILVIFYRKCGSISV 60 MSIELML AVNLN ++FS+Y+ D+ GQ+F++F++ VAAAE ++GLAILV YR+ G+I++ Sbjct: 33 MSIELMLNAVNLNFVAFSSYLGDLDGQVFAIFVITVAAAEAAVGLAILVALYRRRGTINI 92 Query: 61 DDFNQMKG 68 DD N+M+G Sbjct: 93 DDLNEMRG 100 >gnl|CDD|176958 CHL00015, ndhE, NADH dehydrogenase subunit 4L. Length = 101 Score = 64.3 bits (157), Expect = 7e-12 Identities = 29/69 (42%), Positives = 46/69 (66%), Gaps = 2/69 (2%) Query: 1 MSIELMLLAVNLNMISFSAYM--QDISGQIFSLFILLVAAAETSIGLAILVIFYRKCGSI 58 M +EL+L AVN+N ++FS + + + G IFS+F++ +AAAE +IGLAI+ YR S Sbjct: 32 MCLELILNAVNINFVTFSDFFDSRQLKGDIFSIFVIAIAAAEAAIGLAIVSSIYRNRKST 91 Query: 59 SVDDFNQMK 67 ++ N +K Sbjct: 92 RINQSNLLK 100 >gnl|CDD|177231 MTH00180, ND4L, NADH dehydrogenase subunit 4L; Provisional. Length = 99 Score = 62.7 bits (153), Expect = 2e-11 Identities = 36/68 (52%), Positives = 51/68 (75%) Query: 1 MSIELMLLAVNLNMISFSAYMQDISGQIFSLFILLVAAAETSIGLAILVIFYRKCGSISV 60 MSIELMLLA++L + S + ++ GQIF++ IL VAAAE++IGLAILV +YR G+I+V Sbjct: 32 MSIELMLLAISLLFLINSVAIDNLIGQIFTIMILTVAAAESAIGLAILVAYYRIRGTIAV 91 Query: 61 DDFNQMKG 68 N ++G Sbjct: 92 KSLNLLRG 99 >gnl|CDD|144131 pfam00420, Oxidored_q2, NADH-ubiquinone/plastoquinone oxidoreductase chain 4L. Length = 96 Score = 59.8 bits (146), Expect = 1e-10 Identities = 25/68 (36%), Positives = 40/68 (58%) Query: 1 MSIELMLLAVNLNMISFSAYMQDISGQIFSLFILLVAAAETSIGLAILVIFYRKCGSISV 60 + +ELM+L++ L ++ FS + D Q L +L+ AA E ++GLA+LV YR G+ V Sbjct: 29 LCLELMMLSLFLLLVLFSLLLADPLPQALPLTLLVFAACEAALGLALLVALYRTHGTDDV 88 Query: 61 DDFNQMKG 68 N +K Sbjct: 89 QSLNLLKC 96 >gnl|CDD|177099 MTH00001, ND4L, NADH dehydrogenase subunit 4L; Provisional. Length = 99 Score = 51.6 bits (124), Expect = 4e-08 Identities = 28/68 (41%), Positives = 45/68 (66%) Query: 1 MSIELMLLAVNLNMISFSAYMQDISGQIFSLFILLVAAAETSIGLAILVIFYRKCGSISV 60 +SIEL+LL+ + S + + QIF++ L +AAAE++IGLAI+V +YR G+IS+ Sbjct: 32 VSIELVLLSTFFLFLINSIEIDLLIEQIFTIMGLTIAAAESAIGLAIMVAYYRIRGTISL 91 Query: 61 DDFNQMKG 68 N ++G Sbjct: 92 KSLNSLRG 99 >gnl|CDD|177240 MTH00192, ND4L, NADH dehydrogenase subunit 4L; Provisional. Length = 99 Score = 49.5 bits (118), Expect = 2e-07 Identities = 33/68 (48%), Positives = 51/68 (75%) Query: 1 MSIELMLLAVNLNMISFSAYMQDISGQIFSLFILLVAAAETSIGLAILVIFYRKCGSISV 60 MSIEL+LLA++ +I +S + ++ G IFSL +L VAAAE++IGLAILV ++R G+I++ Sbjct: 32 MSIELILLAISYLLIVYSVTLDNLLGIIFSLMVLTVAAAESAIGLAILVAYFRLTGTITI 91 Query: 61 DDFNQMKG 68 N ++G Sbjct: 92 KALNLLRG 99 >gnl|CDD|39868 KOG4669, KOG4669, KOG4669, NADH dehydrogenase subunit 4L and related proteins [Energy production and conversion]. Length = 100 Score = 42.1 bits (99), Expect = 3e-05 Identities = 32/68 (47%), Positives = 46/68 (67%) Query: 1 MSIELMLLAVNLNMISFSAYMQDISGQIFSLFILLVAAAETSIGLAILVIFYRKCGSISV 60 M +E MLLAVN N + F+ D+ GQ+F++ +L AAAE +IGLAILV +R G+I V Sbjct: 33 MCLESMLLAVNSNFLFFTLSSDDMMGQVFAILVLTFAAAEAAIGLAILVSIFRTRGTIYV 92 Query: 61 DDFNQMKG 68 + N ++G Sbjct: 93 EFINLLQG 100 >gnl|CDD|177118 MTH00043, ND4L, NADH dehydrogenase subunit 4L; Validated. Length = 98 Score = 30.3 bits (69), Expect = 0.13 Identities = 22/67 (32%), Positives = 40/67 (59%) Query: 1 MSIELMLLAVNLNMISFSAYMQDISGQIFSLFILLVAAAETSIGLAILVIFYRKCGSISV 60 + +EL+L+++ LN+ +S + S FSL +L ++A E SIGL+++V+ R S V Sbjct: 31 LCLELLLISLFLNISIWSLNYGNFSNLSFSLLLLTLSACEASIGLSLMVLLSRNHNSDLV 90 Query: 61 DDFNQMK 67 N ++ Sbjct: 91 ASLNLLQ 97 >gnl|CDD|177184 MTH00125, ND4L, NADH dehydrogenase subunit 4L; Provisional. Length = 98 Score = 27.9 bits (63), Expect = 0.61 Identities = 16/57 (28%), Positives = 28/57 (49%) Query: 1 MSIELMLLAVNLNMISFSAYMQDISGQIFSLFILLVAAAETSIGLAILVIFYRKCGS 57 + +E M+L++ + + + Q S + +L +A E GLA+LV R GS Sbjct: 31 LCLESMMLSLFIMLSLWPITTQTPSFTPMPIILLTFSACEAGTGLALLVATTRTHGS 87 >gnl|CDD|177206 MTH00149, ND4L, NADH dehydrogenase subunit 4L; Provisional. Length = 97 Score = 27.9 bits (63), Expect = 0.67 Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 2/66 (3%) Query: 2 SIELMLLAVNLNMISFSAYMQDISGQIFSLFILLVAAAETSIGLAILVIFYRKCGSISVD 61 S+E ++L++ L M+ S+ + S +F L IL A E S+GL++LV R G+ V Sbjct: 33 SLEALMLSL-LVMMFSSSGLISFSSYLF-LIILTFGACEASLGLSLLVSLIRLHGNDYVS 90 Query: 62 DFNQMK 67 + +K Sbjct: 91 SLSSLK 96 >gnl|CDD|177232 MTH00181, ND4L, NADH dehydrogenase subunit 4L; Provisional. Length = 93 Score = 25.7 bits (57), Expect = 2.6 Identities = 21/62 (33%), Positives = 32/62 (51%) Query: 3 IELMLLAVNLNMISFSAYMQDISGQIFSLFILLVAAAETSIGLAILVIFYRKCGSISVDD 62 +E M+L + L + FS S +F L +L +A E +GL++LV R GS + Sbjct: 30 LEGMMLFLFLLLALFSLLSSSSSMLMFGLILLTFSACEAVLGLSLLVATNRTHGSDHLLK 89 Query: 63 FN 64 FN Sbjct: 90 FN 91 >gnl|CDD|177237 MTH00188, ND4L, NADH dehydrogenase subunit 4L; Provisional. Length = 97 Score = 25.7 bits (57), Expect = 3.1 Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 2/67 (2%) Query: 1 MSIELMLLAVNLNMISFSAYMQDISGQIFSLFILLVAAAETSIGLAILVIFYRKCGSISV 60 +S+E ++L++ ++ +YM+ SL +L AA E S+GLA+LV R GS V Sbjct: 32 LSLEAIMLSLFWFLLVGLSYME--KELYLSLVLLTFAACEASVGLALLVSLIRSHGSDYV 89 Query: 61 DDFNQMK 67 N +K Sbjct: 90 SSLNLIK 96 >gnl|CDD|177139 MTH00067, ND4L, NADH dehydrogenase subunit 4L; Provisional. Length = 98 Score = 24.6 bits (54), Expect = 7.2 Identities = 16/55 (29%), Positives = 31/55 (56%) Query: 3 IELMLLAVNLNMISFSAYMQDISGQIFSLFILLVAAAETSIGLAILVIFYRKCGS 57 +E M+L++ + + +S + +S +F+L +A E S GLA++V R G+ Sbjct: 33 LEGMMLSLFIALSLWSTQFESLSYFSLPMFMLTFSACEASTGLALMVATTRTHGT 87 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.330 0.141 0.381 Gapped Lambda K H 0.267 0.0840 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 727,464 Number of extensions: 29687 Number of successful extensions: 165 Number of sequences better than 10.0: 1 Number of HSP's gapped: 163 Number of HSP's successfully gapped: 27 Length of query: 68 Length of database: 6,263,737 Length adjustment: 39 Effective length of query: 29 Effective length of database: 5,420,986 Effective search space: 157208594 Effective search space used: 157208594 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 51 (23.2 bits)