BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780864|ref|YP_003065277.1| NADH-ubiquinone
oxidoreductase, chain 4L [Candidatus Liberibacter asiaticus str.
psy62]
         (68 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780864|ref|YP_003065277.1| NADH-ubiquinone oxidoreductase, chain 4L [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 68

 Score =  134 bits (336), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 68/68 (100%), Positives = 68/68 (100%)

Query: 1  MSIELMLLAVNLNMISFSAYMQDISGQIFSLFILLVAAAETSIGLAILVIFYRKCGSISV 60
          MSIELMLLAVNLNMISFSAYMQDISGQIFSLFILLVAAAETSIGLAILVIFYRKCGSISV
Sbjct: 1  MSIELMLLAVNLNMISFSAYMQDISGQIFSLFILLVAAAETSIGLAILVIFYRKCGSISV 60

Query: 61 DDFNQMKG 68
          DDFNQMKG
Sbjct: 61 DDFNQMKG 68


>gi|254780535|ref|YP_003064948.1| 3-ketoacyl-(acyl-carrier-protein) reductase [Candidatus
          Liberibacter asiaticus str. psy62]
          Length = 247

 Score = 27.7 bits (60), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 19/33 (57%)

Query: 35 LVAAAETSIGLAILVIFYRKCGSISVDDFNQMK 67
          LV  A  SIGLAI  I Y++  S+ +   +Q K
Sbjct: 10 LVTGASGSIGLAIAKILYKQGASVGLHGTSQEK 42


>gi|254780277|ref|YP_003064690.1| DNA polymerase I [Candidatus Liberibacter asiaticus str. psy62]
          Length = 976

 Score = 20.0 bits (40), Expect = 7.3,   Method: Composition-based stats.
 Identities = 7/22 (31%), Positives = 15/22 (68%)

Query: 10  VNLNMISFSAYMQDISGQIFSL 31
           ++ N++S    + D+SG+ F+L
Sbjct: 602 ISKNLLSLEENIYDLSGEKFNL 623


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.330    0.141    0.381 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,367
Number of Sequences: 1233
Number of extensions: 924
Number of successful extensions: 7
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 68
length of database: 328,796
effective HSP length: 39
effective length of query: 29
effective length of database: 280,709
effective search space:  8140561
effective search space used:  8140561
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 31 (16.5 bits)