HHsearch alignment for GI: 254780865 and conserved domain: CHL00025
>CHL00025 ndhF NADH dehydrogenase subunit 5.
Probab=100.00 E-value=0 Score=1075.40 Aligned_cols=627 Identities=37% Similarity=0.549 Sum_probs=538.5
Q ss_pred HHHHHHHHHHHHHHHHH----HCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEECCCCCEEE
Q ss_conf 89999999999999973----012--421478999999999999999999999725898528999753101308822357
Q gi|254780865|r 6 EVIVFLPLIGAVFSGFF----GRL--MGKQFADIFTSLLMVIGAFLSWYVFYEIGFGHDVQVVKREIFPWIIFDGLDIPW 79 (666)
Q Consensus 6 ~l~~~~Pl~~a~i~~~~----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wi~~~~~~~~~ 79 (666)
T Consensus 9 wlip~~Pl~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~---~~~~~~w~~~~~~~~~~ 85 (738)
T CHL00025 9 WIIPFLPLPVSMLIGLGLLLFPTATKNLRRMWAFLSILLLSIVMIFSLNLSIQQINGSSI---YQYLWSWTINNDFSLEF 85 (738)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC---EEEEEEEEEECCEEEEE
T ss_conf 999998799999999999852221333131999999999999999999999999649982---79987617758861688
Q ss_pred EEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 78743378999999999999999997475306888661899999999999999986558999988888856889988762
Q gi|254780865|r 80 GLRIDTLSSVMFVVVNSISAVVHIYSIGYMHDDPHRPRFFSYLSFFTFAMLVLVSSDNLLQMFFGWEGVGLASYLLIGFW 159 (666)
Q Consensus 80 ~~~~D~ls~~~~~~~~~i~~~~~~ys~~y~~~~~~~~~f~~~l~l~~~~m~~~~~s~~l~~~~v~wE~~~l~sy~Li~~~ 159 (666)
T Consensus 86 ~~~~D~ls~~m~~~vt~v~~lv~iYS~~Ym~~d~~~~rff~~l~lf~~~ml~lv~s~nl~~~fv~wE~~gl~SylLIgf~ 165 (738)
T CHL00025 86 GYLIDPLTSIMLILITTVGILVLIYSDNYMSHDQGYLRFFAYLSFFNTSMLGLVTSSNLIQIYIFWELVGMCSYLLIGFW 165 (738)
T ss_pred EEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHEEE
T ss_conf 88973688999999999999999995897179998057999999999999999994749999999999999987841132
Q ss_pred CCCHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf 03445410363000221224789999999999996205989999875431000124555566666666532024553179
Q gi|254780865|r 160 SFKESAIKASMKAFVVNRIGDLGLILAISAIIYLFHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSI 239 (666)
Q Consensus 160 ~~~~~~~~a~~k~~~~~~~g~~~~l~~i~~l~~~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (666)
T Consensus 166 ~~~~~a~~aa~kafi~~riGd~~~l~gi~~l~~~~gt~~~~~l~~~~~~~~~-------------------~~~~~~~~~ 226 (738)
T CHL00025 166 FTRPIAANACQKAFVTNRVGDFGLLLGILGLYWITGSFEFRDLFEIFNNLIY-------------------NNEVNLLFA 226 (738)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-------------------CCCCCHHHH
T ss_conf 3885788999999999979999999999999999858779999999987654-------------------267667999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999998654334323431240000233221000134566667779999630135781344445677777887630
Q gi|254780865|r 240 AIICLLFFLGAMGKSAQLLLHVWLPDAMEGPTPVSALIHAATMVTAGVFLVARMSPLFELSPFVLDCITVLGCITAFFAA 319 (666)
Q Consensus 240 ~~~~~l~~~g~~~K~a~~P~h~WLp~A~~aPtpvSAllhs~~mv~~Gvy~l~r~~~~~~~~~~~~~~~~~~g~~t~~~g~ 319 (666)
T Consensus 227 ~~~~~ll~~g~~~KsAq~Plh~WLPdAm~~PTPvSAlihaatmV~aGvyl~~R~~~~~~~~p~~~~~v~~ig~~T~~~~a 306 (738)
T CHL00025 227 TLCAFLLFLGPVAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFLVARLLPLFIVIPYIMNLISLIGIITALLGA 306 (738)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999987430755002503205997088999887898844765634726765068999999999999999999
Q ss_pred HHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHCCCCCCCC--------CCCCCCCCCCC
Q ss_conf 0111024520244321000135334456553111003465553100012222101232111--------00001101277
Q gi|254780865|r 320 TVGLVQHDIKRVIAYSTCSQLGYMFVALGCRAYGASIFHLFTHAFFKALLFLGSGSVIHAV--------AGEQDMRRMGG 391 (666)
Q Consensus 320 ~~al~q~d~Kr~lAySsis~~G~i~~~~g~~~~~~a~~~~~~H~~~ka~LFl~aG~vi~~~--------~~~~~i~~~gG 391 (666)
T Consensus 307 ~~a~~q~DiKr~LAyST~sQlGym~~~~g~g~~~aa~~Hl~~Ha~fKalLFl~aGsvih~~~~~~~~~~~~~qd~~~mgG 386 (738)
T CHL00025 307 TLALAQKDIKRGLAYSTMSQLGYMMLALGMGSYRAALFHLITHAYSKALLFLGSGSVIHSMEPIVGYSPDKSQNMVLMGG 386 (738)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCC
T ss_conf 99986887888888758988899999646995899999999999999999988889999710212457677704888649
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 61546699999998864210110000000024432178888889864102444442102211345433310342457874
Q gi|254780865|r 392 LYPHLPRTCWMMIVGTLALTGFGIPETSIGFSGFFSKDIILEVAYTSSHFTFVFFLLLFAAFLTSFYSWRLMFLTFFGKM 471 (666)
Q Consensus 392 l~~~~P~~~~~~~i~~lsl~G~P~~~~~~p~~gf~sk~~il~~~~~~~~~~~~~~~~~~~~~lt~~Y~~r~~~~vF~G~~ 471 (666)
T Consensus 387 l~k~mP~t~~~f~ig~lal~GiP------p~~GF~SKd~Il~~a~~~~~--~l~~~~~~tA~lTAFYm~Rl~fltF~G~~ 458 (738)
T CHL00025 387 LRKYMPITKTTFLLGTLSLCGIP------PLACFWSKDEILNDSWLYSP--IFAIIAWSTAGLTAFYMFRIYLLTFEGHL 458 (738)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCC------CCCHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHHHHHHHHEECCCC
T ss_conf 45586699999999889982686------41258769999999987462--99999999999999999999982247866
Q ss_pred CCCC-------------------------------------------------------------------CCHHHHCCC
Q ss_conf 4332-------------------------------------------------------------------100000013
Q gi|254780865|r 472 RVDK-------------------------------------------------------------------DISHKIHES 484 (666)
Q Consensus 472 ~~~~-------------------------------------------------------------------~~~~~~~e~ 484 (666)
T Consensus 459 R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pHES 538 (738)
T CHL00025 459 RVHFQNYSGKKNSSFYSISLWGKEESKKLNKLLPLLTMNNNEGVSFFSKKKYKIDGNVRNMTRPFSHFGNKKTFSYPHES 538 (738)
T ss_pred CCCCCCCCCCCCCCCCHHHHHHCCHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 53223245677786420334301003332023012312565443300012233454322356666566666787887787
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC----CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 553332024565666321000001246764211----3455433575333201233688999999999999999999999
Q gi|254780865|r 485 PLVMQIPLFILAIGSIFFGFIFHDVFFGSAYSS----FWKGALFASSSNNVLERYHEVPLWVEYSSFIAFFVGFFSAFLM 560 (666)
Q Consensus 485 ~~~m~~pl~vLa~~si~~G~~~~~~~~~~~~~~----~~~~~l~~~~~~~~l~~~~~~~l~~~~i~ll~~iiGi~la~ll 560 (666)
T Consensus 539 P~~MtlPLiILAi~Sv~~G~ig~p~~~~~~~~~~~~~wl~p~~~~~~~~~~~~~~~~~~l~~a~~sv~val~Gi~lA~~l 618 (738)
T CHL00025 539 DNTMLFPLLVLLLFTLFIGFIGIPFNQEGIDLDILSKWLTPSINLLHQNSNNSVDWYEFLTNAIFSVSIALFGIFIASIL 618 (738)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCHHHHHHHCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 40248999999999999976214044302320267775033002301013565108999999999999999999999999
Q ss_pred HHHCCHH----------------HHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8704012----------------466564112589998705781689999999999999999999875576653415499
Q gi|254780865|r 561 YIICPSL----------------PKFLSEKCRFFYCFLQNAWYFDRIYDCLLVRPIVRLATILWKRVDLSIDKYGPGGIV 624 (666)
Q Consensus 561 y~~~~~~----------------~~~~~~~~~~l~~~l~~~~y~d~lY~~~ivk~~~~ls~~l~~~~D~~i~d~~v~gi~ 624 (666)
T Consensus 619 Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~f~~NK~YiDelY~~vfVr~v~~La~~~-~~fDr~iIDGiVNGig 697 (738)
T CHL00025 619 YKPVYSSLQNLDLINSFVKRGPKRILLDKIINVIYNWSYNRGYIDAFYTITFVNGIRGLAELT-SFFDRRIIDGIVNGVG 697 (738)
T ss_pred HHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH-HHHCCCEECCCCHHHH
T ss_conf 803300010135554553046404578887778998786157389999999999999999999-9815851797547899
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999988509628899999999999999999984
Q gi|254780865|r 625 ACVRYLSSYSSRLQTGYLDHYAFSMLIGISILVIVMLLQ 663 (666)
Q Consensus 625 ~~v~~~s~~lr~lQtG~i~~Yi~~i~igl~llli~~ll~ 663 (666)
T Consensus 698 ~~t~~~G~~lR~lQTG~Vq~Yaf~ml~Gvvvll~il~f~ 736 (738)
T CHL00025 698 ITSFFVGEGIKYVGGGRISSYLFLYLFYVLIFLLILYFL 736 (738)
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999867760686768999999999999999999998