HHsearch alignment for GI: 254780865 and conserved domain: CHL00049
>CHL00049 ndhB NADH dehydrogenase subunit 2.
Probab=100.00 E-value=0 Score=568.96 Aligned_cols=395 Identities=19% Similarity=0.312 Sum_probs=335.2
Q ss_pred EEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7874337899999999999999999747530688-866189999999999999998655899998888885688998876
Q gi|254780865|r 80 GLRIDTLSSVMFVVVNSISAVVHIYSIGYMHDDP-HRPRFFSYLSFFTFAMLVLVSSDNLLQMFFGWEGVGLASYLLIGF 158 (666)
Q Consensus 80 ~~~~D~ls~~~~~~~~~i~~~~~~ys~~y~~~~~-~~~~f~~~l~l~~~~m~~~~~s~~l~~~~v~wE~~~l~sy~Li~~ 158 (666)
T Consensus 76 ~~~~D~~s~~~~~ii~~~~~l~~l~s~~y~~~~~~~~~Ef~~l~l~a~lG~~~l~~a~dl~~lfl~lEl~sl~sY~Lv~~ 155 (498)
T CHL00049 76 NFQTNNFNEIFRFLILLCSTLCIPLSVEYIECTEMAITEFLLFVLTATLGGMFLCGANDLITIFVALECLSLCSYLLSGY 155 (498)
T ss_pred CEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 16876588999999999999999999999975677664899999999998999998627999999999999999999894
Q ss_pred HCCCHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
Q ss_conf 203445410363000221224789999999999996-2059899998754310001245555666666665320245531
Q gi|254780865|r 159 WSFKESAIKASMKAFVVNRIGDLGLILAISAIIYLF-HSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHD 237 (666)
Q Consensus 159 ~~~~~~~~~a~~k~~~~~~~g~~~~l~~i~~l~~~~-gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (666)
T Consensus 156 ~~~~~~s~eAalKYfllg~~ss~~lL~GisllYg~tggs~~l~~i~~~~~~~~----------------------~~~~~ 213 (498)
T CHL00049 156 TKKDVRSNEATMKYLLMGGASSSILVYGFSWLYGLSGGEIELQEIVNGLINTQ----------------------MYNSP 213 (498)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCC----------------------CCCCH
T ss_conf 33786789999999999988899999999999999368000999999987534----------------------44407
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHC-CCCCCCCCHHHHHHHHHHHHHHHHHHCC-C-CCCHHHHHHHHHHHHHH
Q ss_conf 7999999999998654334323431240000-2332210001345666677799996301-3-57813444456777778
Q gi|254780865|r 238 SIAIICLLFFLGAMGKSAQLLLHVWLPDAME-GPTPVSALIHAATMVTAGVFLVARMSPL-F-ELSPFVLDCITVLGCIT 314 (666)
Q Consensus 238 ~~~~~~~l~~~g~~~K~a~~P~h~WLp~A~~-aPtpvSAllhs~~mv~~Gvy~l~r~~~~-~-~~~~~~~~~~~~~g~~t 314 (666)
T Consensus 214 ~~~~~l~lil~G~~fK~a~~PFH~WlPDvY~gAPtpvsa~l-s~~~K~a~~~~l~Rl~~~~~~~~~~~~~~~l~ila~lS 292 (498)
T CHL00049 214 GISIALIFITVGIGFKLSLAPFHQWTPDVYEGSPTPVVAFL-SVTSKVAASALATRIFDIPFYFSSNEWHLLLEILAILS 292 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999986225323223557447978999999-99999999999999999873403789999999999999
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCC----CCCCHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 876300111024520244321000135334456553----1110034655531000122221012321110000110127
Q gi|254780865|r 315 AFFAATVGLVQHDIKRVIAYSTCSQLGYMFVALGCR----AYGASIFHLFTHAFFKALLFLGSGSVIHAVAGEQDMRRMG 390 (666)
Q Consensus 315 ~~~g~~~al~q~d~Kr~lAySsis~~G~i~~~~g~~----~~~~a~~~~~~H~~~ka~LFl~aG~vi~~~~~~~~i~~~g 390 (666)
T Consensus 293 mi~G~l~Al~Q~~iKRlLAYSSIsh~Gyillgl~~g~~~~g~~~~~~yl~~y~~~~~~~F~~i~~~~~-~~g~~~i~~l~ 371 (498)
T CHL00049 293 MILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNDGYASMITYMLFYIFMNLGTFACIILFGL-RTGTDNIRDYA 371 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCHHHHHHH
T ss_conf 99999999988643077767868776899999996645889999999999999999999999999998-31720499877
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 76154669999999886421011000000002443217888888986410244444210221134543331034245787
Q gi|254780865|r 391 GLYPHLPRTCWMMIVGTLALTGFGIPETSIGFSGFFSKDIILEVAYTSSHFTFVFFLLLFAAFLTSFYSWRLMFLTFFGK 470 (666)
Q Consensus 391 Gl~~~~P~~~~~~~i~~lsl~G~P~~~~~~p~~gf~sk~~il~~~~~~~~~~~~~~~~~~~~~lt~~Y~~r~~~~vF~G~ 470 (666)
T Consensus 372 GL~~~~P~~a~~~~i~~lSLaGiP------P~~GF~~K~~if~~~~~~g~~-~l~~i~~l~Svis~~YYlrii~~m~~~~ 444 (498)
T CHL00049 372 GLYTKDPFLALSLALCLLSLGGIP------PLAGFFGKLYLFWCGWQAGLY-FLVSIGLLTSVVSIYYYLKIIKLLMTGR 444 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCC------HHHHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 187646999999999999984720------110599999999999986969-9999999999999999999999993289
Q ss_pred CCCCCCCHHHHCCCCCCC--CCCHHHHHHHHHHHHHH
Q ss_conf 443321000000135533--32024565666321000
Q gi|254780865|r 471 MRVDKDISHKIHESPLVM--QIPLFILAIGSIFFGFI 505 (666)
Q Consensus 471 ~~~~~~~~~~~~e~~~~m--~~pl~vLa~~si~~G~~ 505 (666)
T Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 481 (498)
T CHL00049 445 NQEITPYVRNYRRSPWSLRSNNSIELSMIVCVIASTI 481 (498)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 9766754345788740025556499999999999999