HHsearch alignment for GI: 254780865 and conserved domain: COG1008

>COG1008 NuoM NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion].
Probab=100.00  E-value=0  Score=640.34  Aligned_cols=462  Identities=25%  Similarity=0.440  Sum_probs=409.3

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEECCCCCEEEEE
Q ss_conf             20798999999999999997301242147899999999999999999999972589852899975310130882235778
Q gi|254780865|r    2 AMIYEVIVFLPLIGAVFSGFFGRLMGKQFADIFTSLLMVIGAFLSWYVFYEIGFGHDVQVVKREIFPWIIFDGLDIPWGL   81 (666)
Q Consensus         2 ~~l~~l~~~~Pl~~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wi~~~~~~~~~~~   81 (666)
T Consensus         3 ~p~Ls~li~lPli~alli~~~~~--~~~~~r~~al~~~~~~~~l~l~~~~~Fd~s~~-~~qf~e~~~Wi~~--lGl~y~v   77 (497)
T COG1008           3 FPLLSLLIFLPLIGALLILLIPD--NGKFARWIALVVSLATLLLSLYLFAGFDISSP-GFQFVESYPWIPQ--LGLSYHL   77 (497)
T ss_pred             CHHHHHHHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-CEEEEEEECCHHH--CCCEEEE
T ss_conf             63899999999999999976177--87257999999999999999999996678999-7379997512564--4926999


Q ss_pred             EEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             74337899999999999999999747530688866189999999999999998655899998888885688998876203
Q gi|254780865|r   82 RIDTLSSVMFVVVNSISAVVHIYSIGYMHDDPHRPRFFSYLSFFTFAMLVLVSSDNLLQMFFGWEGVGLASYLLIGFWSF  161 (666)
Q Consensus        82 ~~D~ls~~~~~~~~~i~~~~~~ys~~y~~~~~~~~~f~~~l~l~~~~m~~~~~s~~l~~~~v~wE~~~l~sy~Li~~~~~  161 (666)
T Consensus        78 gvDGiS~~lvlLt~~l~~lail~sw~~i~--~r~~~f~~~~L~le~~~iGvF~a~DllLFyvFwE~~LIPmy~iIgiwGg  155 (497)
T COG1008          78 GVDGISLLLVLLTALLTLLAILASWREIE--KRPKLFYALFLLLEGGVIGVFAALDLLLFYVFWELMLIPMYFLIGIWGG  155 (497)
T ss_pred             ECCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             65078799999999999999999626666--6088999999999999999999988999999999999999997542068


Q ss_pred             CHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf             4454103630002212247899999999999962--05989999875431000124555566666666532024553179
Q gi|254780865|r  162 KESAIKASMKAFVVNRIGDLGLILAISAIIYLFH--SVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSI  239 (666)
Q Consensus       162 ~~~~~~a~~k~~~~~~~g~~~~l~~i~~l~~~~g--s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (666)
T Consensus       156 -~~R~yAa~KFflYT~~gsl~mLla~~~~~~~~g~~TFd~~~l~~~~---------------------------~~~~~q  207 (497)
T COG1008         156 -KRRIYAATKFFLYTLLGSLFMLLAFLYLYFLTGSPTFDILELLALN---------------------------LPLGVQ  207 (497)
T ss_pred             -CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHCC---------------------------CCHHHH
T ss_conf             -7514889999999999899999999999985699721079998446---------------------------775799


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCHH-CCCCCCCCCHHHHHHHHHHHHHHHHHH-CCCC-CCHHHHHHHHHHHHHHHH
Q ss_conf             9999999999865433432343124000-023322100013456666777999963-0135-781344445677777887
Q gi|254780865|r  240 AIICLLFFLGAMGKSAQLLLHVWLPDAM-EGPTPVSALIHAATMVTAGVFLVARMS-PLFE-LSPFVLDCITVLGCITAF  316 (666)
Q Consensus       240 ~~~~~l~~~g~~~K~a~~P~h~WLp~A~-~aPtpvSAllhs~~mv~~Gvy~l~r~~-~~~~-~~~~~~~~~~~~g~~t~~  316 (666)
T Consensus       208 ~~L~~~f~iaFaVK~P~~P~HTWLPDAh~eApt~gSViL-aGiLlKmG~YGllRf~L~lfP~as~~fap~l~~L~visIi  286 (497)
T COG1008         208 TLLFLGFLIAFAVKMPLFPLHTWLPDAHVEAPTAGSVIL-AGILLKMGGYGLLRFSLPLFPDASAYFAPLLVALGVISII  286 (497)
T ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCHHHHH-HHHHHHHCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             999999999998406876530568724203897078999-9999972226726623003876378999999999999999


Q ss_pred             HHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCC---CCCCHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             6300111024520244321000135334456553---1110034655531000122221012321110000110127761
Q gi|254780865|r  317 FAATVGLVQHDIKRVIAYSTCSQLGYMFVALGCR---AYGASIFHLFTHAFFKALLFLGSGSVIHAVAGEQDMRRMGGLY  393 (666)
Q Consensus       317 ~g~~~al~q~d~Kr~lAySsis~~G~i~~~~g~~---~~~~a~~~~~~H~~~ka~LFl~aG~vi~~~~~~~~i~~~gGl~  393 (666)
T Consensus       287 Y~al~A~~Q~diKrliAYSSiSHMGfV~lgifs~~~~g~~GAv~QM~sHGlisa~LFl~vG-~iy~r~hTr~i~~~GGl~  365 (497)
T COG1008         287 YGALVAFAQTDIKRLIAYSSISHMGFVTLGIFSFNELGVSGAVFQMLSHGLISAALFLLVG-VLYERTHTRDIADLGGLA  365 (497)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHCCHHHHHHCCHH
T ss_conf             9999999998689999998266878999999981588887999999981389999999999-999862424688747787


Q ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             54669999999886421011000000002443217888888986410244444210221134543331034245787443
Q gi|254780865|r  394 PHLPRTCWMMIVGTLALTGFGIPETSIGFSGFFSKDIILEVAYTSSHFTFVFFLLLFAAFLTSFYSWRLMFLTFFGKMRV  473 (666)
Q Consensus       394 ~~~P~~~~~~~i~~lsl~G~P~~~~~~p~~gf~sk~~il~~~~~~~~~~~~~~~~~~~~~lt~~Y~~r~~~~vF~G~~~~  473 (666)
T Consensus       366 ~~mP~~aa~~~~~~mAs~glP------G~sgFvgEFlil~G~f~~~--~~~~~la~~g~iltA~Y~L~~~~rv~fG~~~~  437 (497)
T COG1008         366 NKMPKLAALFMLFAMASLGLP------GTSGFVGEFLILLGSFQVF--PWVAFLAAFGLILTAVYMLWMYQRVFFGPLKE  437 (497)
T ss_pred             HHCHHHHHHHHHHHHHHCCCC------CCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             647599999999999966898------6301999899995231562--99999999999999999999999997487774


Q ss_pred             CCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf             3210000001355333202456566632100000124
Q gi|254780865|r  474 DKDISHKIHESPLVMQIPLFILAIGSIFFGFIFHDVF  510 (666)
Q Consensus       474 ~~~~~~~~~e~~~~m~~pl~vLa~~si~~G~~~~~~~  510 (666)
T Consensus       438 ~~--~~~~~dl~~rE~~~~~~L~~~ii~lGvyP~~~~  472 (497)
T COG1008         438 GS--LAELPDLNGREVFILAPLVVLILFLGVYPNPIL  472 (497)
T ss_pred             CH--HHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf             31--342457438699999999999999817868999