HHsearch alignment for GI: 254780865 and conserved domain: COG1008
>COG1008 NuoM NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion].
Probab=100.00 E-value=0 Score=640.34 Aligned_cols=462 Identities=25% Similarity=0.440 Sum_probs=409.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEECCCCCEEEEE
Q ss_conf 20798999999999999997301242147899999999999999999999972589852899975310130882235778
Q gi|254780865|r 2 AMIYEVIVFLPLIGAVFSGFFGRLMGKQFADIFTSLLMVIGAFLSWYVFYEIGFGHDVQVVKREIFPWIIFDGLDIPWGL 81 (666)
Q Consensus 2 ~~l~~l~~~~Pl~~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wi~~~~~~~~~~~ 81 (666)
T Consensus 3 ~p~Ls~li~lPli~alli~~~~~--~~~~~r~~al~~~~~~~~l~l~~~~~Fd~s~~-~~qf~e~~~Wi~~--lGl~y~v 77 (497)
T COG1008 3 FPLLSLLIFLPLIGALLILLIPD--NGKFARWIALVVSLATLLLSLYLFAGFDISSP-GFQFVESYPWIPQ--LGLSYHL 77 (497)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-CEEEEEEECCHHH--CCCEEEE
T ss_conf 63899999999999999976177--87257999999999999999999996678999-7379997512564--4926999
Q ss_pred EEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 74337899999999999999999747530688866189999999999999998655899998888885688998876203
Q gi|254780865|r 82 RIDTLSSVMFVVVNSISAVVHIYSIGYMHDDPHRPRFFSYLSFFTFAMLVLVSSDNLLQMFFGWEGVGLASYLLIGFWSF 161 (666)
Q Consensus 82 ~~D~ls~~~~~~~~~i~~~~~~ys~~y~~~~~~~~~f~~~l~l~~~~m~~~~~s~~l~~~~v~wE~~~l~sy~Li~~~~~ 161 (666)
T Consensus 78 gvDGiS~~lvlLt~~l~~lail~sw~~i~--~r~~~f~~~~L~le~~~iGvF~a~DllLFyvFwE~~LIPmy~iIgiwGg 155 (497)
T COG1008 78 GVDGISLLLVLLTALLTLLAILASWREIE--KRPKLFYALFLLLEGGVIGVFAALDLLLFYVFWELMLIPMYFLIGIWGG 155 (497)
T ss_pred ECCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 65078799999999999999999626666--6088999999999999999999988999999999999999997542068
Q ss_pred CHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf 4454103630002212247899999999999962--05989999875431000124555566666666532024553179
Q gi|254780865|r 162 KESAIKASMKAFVVNRIGDLGLILAISAIIYLFH--SVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSI 239 (666)
Q Consensus 162 ~~~~~~a~~k~~~~~~~g~~~~l~~i~~l~~~~g--s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (666)
T Consensus 156 -~~R~yAa~KFflYT~~gsl~mLla~~~~~~~~g~~TFd~~~l~~~~---------------------------~~~~~q 207 (497)
T COG1008 156 -KRRIYAATKFFLYTLLGSLFMLLAFLYLYFLTGSPTFDILELLALN---------------------------LPLGVQ 207 (497)
T ss_pred -CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHCC---------------------------CCHHHH
T ss_conf -7514889999999999899999999999985699721079998446---------------------------775799
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHH-CCCCCCCCCHHHHHHHHHHHHHHHHHH-CCCC-CCHHHHHHHHHHHHHHHH
Q ss_conf 9999999999865433432343124000-023322100013456666777999963-0135-781344445677777887
Q gi|254780865|r 240 AIICLLFFLGAMGKSAQLLLHVWLPDAM-EGPTPVSALIHAATMVTAGVFLVARMS-PLFE-LSPFVLDCITVLGCITAF 316 (666)
Q Consensus 240 ~~~~~l~~~g~~~K~a~~P~h~WLp~A~-~aPtpvSAllhs~~mv~~Gvy~l~r~~-~~~~-~~~~~~~~~~~~g~~t~~ 316 (666)
T Consensus 208 ~~L~~~f~iaFaVK~P~~P~HTWLPDAh~eApt~gSViL-aGiLlKmG~YGllRf~L~lfP~as~~fap~l~~L~visIi 286 (497)
T COG1008 208 TLLFLGFLIAFAVKMPLFPLHTWLPDAHVEAPTAGSVIL-AGILLKMGGYGLLRFSLPLFPDASAYFAPLLVALGVISII 286 (497)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCHHHHH-HHHHHHHCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 999999999998406876530568724203897078999-9999972226726623003876378999999999999999
Q ss_pred HHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCC---CCCCHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 6300111024520244321000135334456553---1110034655531000122221012321110000110127761
Q gi|254780865|r 317 FAATVGLVQHDIKRVIAYSTCSQLGYMFVALGCR---AYGASIFHLFTHAFFKALLFLGSGSVIHAVAGEQDMRRMGGLY 393 (666)
Q Consensus 317 ~g~~~al~q~d~Kr~lAySsis~~G~i~~~~g~~---~~~~a~~~~~~H~~~ka~LFl~aG~vi~~~~~~~~i~~~gGl~ 393 (666)
T Consensus 287 Y~al~A~~Q~diKrliAYSSiSHMGfV~lgifs~~~~g~~GAv~QM~sHGlisa~LFl~vG-~iy~r~hTr~i~~~GGl~ 365 (497)
T COG1008 287 YGALVAFAQTDIKRLIAYSSISHMGFVTLGIFSFNELGVSGAVFQMLSHGLISAALFLLVG-VLYERTHTRDIADLGGLA 365 (497)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHCCHHHHHHCCHH
T ss_conf 9999999998689999998266878999999981588887999999981389999999999-999862424688747787
Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 54669999999886421011000000002443217888888986410244444210221134543331034245787443
Q gi|254780865|r 394 PHLPRTCWMMIVGTLALTGFGIPETSIGFSGFFSKDIILEVAYTSSHFTFVFFLLLFAAFLTSFYSWRLMFLTFFGKMRV 473 (666)
Q Consensus 394 ~~~P~~~~~~~i~~lsl~G~P~~~~~~p~~gf~sk~~il~~~~~~~~~~~~~~~~~~~~~lt~~Y~~r~~~~vF~G~~~~ 473 (666)
T Consensus 366 ~~mP~~aa~~~~~~mAs~glP------G~sgFvgEFlil~G~f~~~--~~~~~la~~g~iltA~Y~L~~~~rv~fG~~~~ 437 (497)
T COG1008 366 NKMPKLAALFMLFAMASLGLP------GTSGFVGEFLILLGSFQVF--PWVAFLAAFGLILTAVYMLWMYQRVFFGPLKE 437 (497)
T ss_pred HHCHHHHHHHHHHHHHHCCCC------CCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 647599999999999966898------6301999899995231562--99999999999999999999999997487774
Q ss_pred CCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 3210000001355333202456566632100000124
Q gi|254780865|r 474 DKDISHKIHESPLVMQIPLFILAIGSIFFGFIFHDVF 510 (666)
Q Consensus 474 ~~~~~~~~~e~~~~m~~pl~vLa~~si~~G~~~~~~~ 510 (666)
T Consensus 438 ~~--~~~~~dl~~rE~~~~~~L~~~ii~lGvyP~~~~ 472 (497)
T COG1008 438 GS--LAELPDLNGREVFILAPLVVLILFLGVYPNPIL 472 (497)
T ss_pred CH--HHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf 31--342457438699999999999999817868999