HHsearch alignment for GI: 254780865 and conserved domain: MTH00004
>MTH00004 ND5 NADH dehydrogenase subunit 5; Validated.
Probab=100.00 E-value=0 Score=913.75 Aligned_cols=565 Identities=34% Similarity=0.565 Sum_probs=499.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEECCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 99999999999999999972589852899975310130882235778743378999999999999999997475306888
Q gi|254780865|r 35 TSLLMVIGAFLSWYVFYEIGFGHDVQVVKREIFPWIIFDGLDIPWGLRIDTLSSVMFVVVNSISAVVHIYSIGYMHDDPH 114 (666)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wi~~~~~~~~~~~~~D~ls~~~~~~~~~i~~~~~~ys~~y~~~~~~ 114 (666)
T Consensus 36 ~~~~~~~~f~~sl~~~~~~~~~~~~~~--~~~~~w~~~~~~~i~~~f~~D~lS~~f~~vv~~Is~~I~~yS~~YM~~d~~ 113 (604)
T MTH00004 36 ITTTVKLAFLISLIPLTLFIYSGTESI--TTNWEWKFTPNFNIPISFKLDQYSLMFLPIALFVTWSILEFATWYMASDPH 113 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCEE--EEEEEEEEECCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 999999999999999999995799359--997361020871606776328639999999999999999996897078999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 66189999999999999998655899998888885688998876203445410363000221224789999999999996
Q gi|254780865|r 115 RPRFFSYLSFFTFAMLVLVSSDNLLQMFFGWEGVGLASYLLIGFWSFKESAIKASMKAFVVNRIGDLGLILAISAIIYLF 194 (666)
Q Consensus 115 ~~~f~~~l~l~~~~m~~~~~s~~l~~~~v~wE~~~l~sy~Li~~~~~~~~~~~a~~k~~~~~~~g~~~~l~~i~~l~~~~ 194 (666)
T Consensus 114 ~~rF~~~l~lF~~sMl~lV~s~Nl~~lfigWEgvGl~SylLI~~~~~r~~a~~aa~ka~i~nRiGD~~lll~i~~l~~~~ 193 (604)
T MTH00004 114 ITKFFKYLLIFLIAMLILTTANNMFQLFIGWEGVGIMSFLLIGWWHGRAEANTAALQAIIYNRIGDIGLILSMAWLAMTL 193 (604)
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 16899999999999999999730999999999999999988845069768899999999998312699999999999994
Q ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCC
Q ss_conf 20598999987543100012455556666666653202455317999999999998654334323431240000233221
Q gi|254780865|r 195 HSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSIAIICLLFFLGAMGKSAQLLLHVWLPDAMEGPTPVS 274 (666)
Q Consensus 195 gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~K~a~~P~h~WLp~A~~aPtpvS 274 (666)
T Consensus 194 gt~~~~~~~~~~------------------------------~~~~l~~l~lilaa~gKSAQfPfh~WLP~AMeaPTPVS 243 (604)
T MTH00004 194 NTWEIQQLFSQT------------------------------QTPLLPLLGLILAATGKSAQFGLHPWLPAAMEGPTPVS 243 (604)
T ss_pred CCEEHHHHHHCC------------------------------CHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCHH
T ss_conf 884399988364------------------------------05899999999999984042777201467755899367
Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 00013456666777999963013578134444567777788763001110245202443210001353344565531110
Q gi|254780865|r 275 ALIHAATMVTAGVFLVARMSPLFELSPFVLDCITVLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVALGCRAYGA 354 (666)
Q Consensus 275 Allhs~~mv~~Gvy~l~r~~~~~~~~~~~~~~~~~~g~~t~~~g~~~al~q~d~Kr~lAySsis~~G~i~~~~g~~~~~~ 354 (666)
T Consensus 244 ALlHssTmV~AGVylliR~~~l~~~~~~~~~~~l~~G~lT~l~aa~~Al~Q~DiKkiiAyST~SQLG~M~~~iglg~~~l 323 (604)
T MTH00004 244 ALLHSSTMVVAGIFLLIRTHPILQNNQTALTICLCLGALTTLFAATCALTQNDIKKIIAFSTSSQLGLMMVTIGLNQPQL 323 (604)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_conf 66244301246799999999998657999999999999999999999972231878999889989999999997463999
Q ss_pred HHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 03465553100012222101232111000011012776154669999999886421011000000002443217888888
Q gi|254780865|r 355 SIFHLFTHAFFKALLFLGSGSVIHAVAGEQDMRRMGGLYPHLPRTCWMMIVGTLALTGFGIPETSIGFSGFFSKDIILEV 434 (666)
Q Consensus 355 a~~~~~~H~~~ka~LFl~aG~vi~~~~~~~~i~~~gGl~~~~P~~~~~~~i~~lsl~G~P~~~~~~p~~gf~sk~~il~~ 434 (666)
T Consensus 324 A~fHl~~HA~FKAlLFL~aGsiIH~~~~~qDir~mGgl~~~mP~t~~~~~igslsL~G~P------flsGFySKD~IlE~ 397 (604)
T MTH00004 324 AFLHISTHAFFKAMLFLCSGSIIHNLNNEQDIRKMGGLQKTLPITTSCLTIGNLALMGTP------FLAGFYSKDLIIET 397 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHCCCC------CCCHHHHHHHHHHH
T ss_conf 999999889999999981059997057862099867986203899999999999852677------43224116999999
Q ss_pred HHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 98641024444421022113454333103424578744332100000013553332024565666321000001246764
Q gi|254780865|r 435 AYTSSHFTFVFFLLLFAAFLTSFYSWRLMFLTFFGKMRVDKDISHKIHESPLVMQIPLFILAIGSIFFGFIFHDVFFGSA 514 (666)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~lt~~Y~~r~~~~vF~G~~~~~~~~~~~~~e~~~~m~~pl~vLa~~si~~G~~~~~~~~~~~ 514 (666)
T Consensus 398 ~~~s~~n~~~~~~~~~~~~lT~~Ys~Rl~~~~~~~~~~~~--~~~~~~E~~~~m~~Pl~~La~~sI~~G~l~~~~~~p~~ 475 (604)
T MTH00004 398 LNTSYLNAWALLLTLLATSFTATYSLRMTLLVQTGFPRTP--PLTPINENNPTITNPITRLALGSIIAGLLISSTILPTK 475 (604)
T ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC--CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 9857508999999999999999999999999980899888--87887889689999999999999999999999976799
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHCCCCHHHHHHH
Q ss_conf 21134554335753332012336889999999999999999999998704012466564112589998705781689999
Q gi|254780865|r 515 YSSFWKGALFASSSNNVLERYHEVPLWVEYSSFIAFFVGFFSAFLMYIICPSLPKFLSEKCRFFYCFLQNAWYFDRIYDC 594 (666)
Q Consensus 515 ~~~~~~~~l~~~~~~~~l~~~~~~~l~~~~i~ll~~iiGi~la~lly~~~~~~~~~~~~~~~~l~~~l~~~~y~d~lY~~ 594 (666)
T Consensus 476 ~~------------------~~~~p~~~Kl~~l~~~~~G~~~~~~l~~~~~~~---~~~~~~~~~~f~~~~~ff~~~~~~ 534 (604)
T MTH00004 476 TP------------------PMTMPTTTKLAALIVTILGILLALELSNMTHTL---TPPKQNTLNNFSNQLGYFNPLLHR 534 (604)
T ss_pred CC------------------CEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 86------------------431418899999999999999999999986551---333344699998887657998888
Q ss_pred HHHHHHHHHHHHH-HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999-998755-76653415499999999999988509628899999999999999999
Q gi|254780865|r 595 LLVRPIVRLATIL-WKRVDL-SIDKYGPGGIVACVRYLSSYSSRLQTGYLDHYAFSMLIGISILVIVM 660 (666)
Q Consensus 595 ~ivk~~~~ls~~l-~~~~D~-~i~d~~v~gi~~~v~~~s~~lr~lQtG~i~~Yi~~i~igl~llli~~ 660 (666)
T Consensus 535 ~~~~~~l~~g~~~~~~~~D~gw~E~~Gp~gi~~~~~~~s~~~~~~q~g~ik~Yl~~f~~~i~~~l~~~ 602 (604)
T MTH00004 535 LLPTTLLKSGQKIATHLIDLSWYEKMGPKGLANLQLTAIKTSTTLHKGLIKTYLTSFALTILIILLLT 602 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 88999999999999894684349986056899999999999999873849999999999999999997