HHsearch alignment for GI: 254780865 and conserved domain: MTH00004

>MTH00004 ND5 NADH dehydrogenase subunit 5; Validated.
Probab=100.00  E-value=0  Score=913.75  Aligned_cols=565  Identities=34%  Similarity=0.565  Sum_probs=499.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEECCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             99999999999999999972589852899975310130882235778743378999999999999999997475306888
Q gi|254780865|r   35 TSLLMVIGAFLSWYVFYEIGFGHDVQVVKREIFPWIIFDGLDIPWGLRIDTLSSVMFVVVNSISAVVHIYSIGYMHDDPH  114 (666)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wi~~~~~~~~~~~~~D~ls~~~~~~~~~i~~~~~~ys~~y~~~~~~  114 (666)
T Consensus        36 ~~~~~~~~f~~sl~~~~~~~~~~~~~~--~~~~~w~~~~~~~i~~~f~~D~lS~~f~~vv~~Is~~I~~yS~~YM~~d~~  113 (604)
T MTH00004         36 ITTTVKLAFLISLIPLTLFIYSGTESI--TTNWEWKFTPNFNIPISFKLDQYSLMFLPIALFVTWSILEFATWYMASDPH  113 (604)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCEE--EEEEEEEEECCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             999999999999999999995799359--997361020871606776328639999999999999999996897078999


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             66189999999999999998655899998888885688998876203445410363000221224789999999999996
Q gi|254780865|r  115 RPRFFSYLSFFTFAMLVLVSSDNLLQMFFGWEGVGLASYLLIGFWSFKESAIKASMKAFVVNRIGDLGLILAISAIIYLF  194 (666)
Q Consensus       115 ~~~f~~~l~l~~~~m~~~~~s~~l~~~~v~wE~~~l~sy~Li~~~~~~~~~~~a~~k~~~~~~~g~~~~l~~i~~l~~~~  194 (666)
T Consensus       114 ~~rF~~~l~lF~~sMl~lV~s~Nl~~lfigWEgvGl~SylLI~~~~~r~~a~~aa~ka~i~nRiGD~~lll~i~~l~~~~  193 (604)
T MTH00004        114 ITKFFKYLLIFLIAMLILTTANNMFQLFIGWEGVGIMSFLLIGWWHGRAEANTAALQAIIYNRIGDIGLILSMAWLAMTL  193 (604)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             16899999999999999999730999999999999999988845069768899999999998312699999999999994


Q ss_pred             HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCC
Q ss_conf             20598999987543100012455556666666653202455317999999999998654334323431240000233221
Q gi|254780865|r  195 HSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSIAIICLLFFLGAMGKSAQLLLHVWLPDAMEGPTPVS  274 (666)
Q Consensus       195 gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~K~a~~P~h~WLp~A~~aPtpvS  274 (666)
T Consensus       194 gt~~~~~~~~~~------------------------------~~~~l~~l~lilaa~gKSAQfPfh~WLP~AMeaPTPVS  243 (604)
T MTH00004        194 NTWEIQQLFSQT------------------------------QTPLLPLLGLILAATGKSAQFGLHPWLPAAMEGPTPVS  243 (604)
T ss_pred             CCEEHHHHHHCC------------------------------CHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCHH
T ss_conf             884399988364------------------------------05899999999999984042777201467755899367


Q ss_pred             CCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf             00013456666777999963013578134444567777788763001110245202443210001353344565531110
Q gi|254780865|r  275 ALIHAATMVTAGVFLVARMSPLFELSPFVLDCITVLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVALGCRAYGA  354 (666)
Q Consensus       275 Allhs~~mv~~Gvy~l~r~~~~~~~~~~~~~~~~~~g~~t~~~g~~~al~q~d~Kr~lAySsis~~G~i~~~~g~~~~~~  354 (666)
T Consensus       244 ALlHssTmV~AGVylliR~~~l~~~~~~~~~~~l~~G~lT~l~aa~~Al~Q~DiKkiiAyST~SQLG~M~~~iglg~~~l  323 (604)
T MTH00004        244 ALLHSSTMVVAGIFLLIRTHPILQNNQTALTICLCLGALTTLFAATCALTQNDIKKIIAFSTSSQLGLMMVTIGLNQPQL  323 (604)
T ss_pred             HHHCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_conf             66244301246799999999998657999999999999999999999972231878999889989999999997463999


Q ss_pred             HHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             03465553100012222101232111000011012776154669999999886421011000000002443217888888
Q gi|254780865|r  355 SIFHLFTHAFFKALLFLGSGSVIHAVAGEQDMRRMGGLYPHLPRTCWMMIVGTLALTGFGIPETSIGFSGFFSKDIILEV  434 (666)
Q Consensus       355 a~~~~~~H~~~ka~LFl~aG~vi~~~~~~~~i~~~gGl~~~~P~~~~~~~i~~lsl~G~P~~~~~~p~~gf~sk~~il~~  434 (666)
T Consensus       324 A~fHl~~HA~FKAlLFL~aGsiIH~~~~~qDir~mGgl~~~mP~t~~~~~igslsL~G~P------flsGFySKD~IlE~  397 (604)
T MTH00004        324 AFLHISTHAFFKAMLFLCSGSIIHNLNNEQDIRKMGGLQKTLPITTSCLTIGNLALMGTP------FLAGFYSKDLIIET  397 (604)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHCCCC------CCCHHHHHHHHHHH
T ss_conf             999999889999999981059997057862099867986203899999999999852677------43224116999999


Q ss_pred             HHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             98641024444421022113454333103424578744332100000013553332024565666321000001246764
Q gi|254780865|r  435 AYTSSHFTFVFFLLLFAAFLTSFYSWRLMFLTFFGKMRVDKDISHKIHESPLVMQIPLFILAIGSIFFGFIFHDVFFGSA  514 (666)
Q Consensus       435 ~~~~~~~~~~~~~~~~~~~lt~~Y~~r~~~~vF~G~~~~~~~~~~~~~e~~~~m~~pl~vLa~~si~~G~~~~~~~~~~~  514 (666)
T Consensus       398 ~~~s~~n~~~~~~~~~~~~lT~~Ys~Rl~~~~~~~~~~~~--~~~~~~E~~~~m~~Pl~~La~~sI~~G~l~~~~~~p~~  475 (604)
T MTH00004        398 LNTSYLNAWALLLTLLATSFTATYSLRMTLLVQTGFPRTP--PLTPINENNPTITNPITRLALGSIIAGLLISSTILPTK  475 (604)
T ss_pred             HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC--CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             9857508999999999999999999999999980899888--87887889689999999999999999999999976799


Q ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHCCCCHHHHHHH
Q ss_conf             21134554335753332012336889999999999999999999998704012466564112589998705781689999
Q gi|254780865|r  515 YSSFWKGALFASSSNNVLERYHEVPLWVEYSSFIAFFVGFFSAFLMYIICPSLPKFLSEKCRFFYCFLQNAWYFDRIYDC  594 (666)
Q Consensus       515 ~~~~~~~~l~~~~~~~~l~~~~~~~l~~~~i~ll~~iiGi~la~lly~~~~~~~~~~~~~~~~l~~~l~~~~y~d~lY~~  594 (666)
T Consensus       476 ~~------------------~~~~p~~~Kl~~l~~~~~G~~~~~~l~~~~~~~---~~~~~~~~~~f~~~~~ff~~~~~~  534 (604)
T MTH00004        476 TP------------------PMTMPTTTKLAALIVTILGILLALELSNMTHTL---TPPKQNTLNNFSNQLGYFNPLLHR  534 (604)
T ss_pred             CC------------------CEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             86------------------431418899999999999999999999986551---333344699998887657998888


Q ss_pred             HHHHHHHHHHHHH-HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999-998755-76653415499999999999988509628899999999999999999
Q gi|254780865|r  595 LLVRPIVRLATIL-WKRVDL-SIDKYGPGGIVACVRYLSSYSSRLQTGYLDHYAFSMLIGISILVIVM  660 (666)
Q Consensus       595 ~ivk~~~~ls~~l-~~~~D~-~i~d~~v~gi~~~v~~~s~~lr~lQtG~i~~Yi~~i~igl~llli~~  660 (666)
T Consensus       535 ~~~~~~l~~g~~~~~~~~D~gw~E~~Gp~gi~~~~~~~s~~~~~~q~g~ik~Yl~~f~~~i~~~l~~~  602 (604)
T MTH00004        535 LLPTTLLKSGQKIATHLIDLSWYEKMGPKGLANLQLTAIKTSTTLHKGLIKTYLTSFALTILIILLLT  602 (604)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             88999999999999894684349986056899999999999999873849999999999999999997