HHsearch alignment for GI: 254780865 and conserved domain: MTH00062
>MTH00062 ND4 NADH dehydrogenase subunit 4; Provisional.
Probab=100.00 E-value=0 Score=392.21 Aligned_cols=342 Identities=18% Similarity=0.178 Sum_probs=280.8
Q ss_pred EEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 78743378999999999999999997475306888661899999999999999986558999988888856889988762
Q gi|254780865|r 80 GLRIDTLSSVMFVVVNSISAVVHIYSIGYMHDDPHRPRFFSYLSFFTFAMLVLVSSDNLLQMFFGWEGVGLASYLLIGFW 159 (666)
Q Consensus 80 ~~~~D~ls~~~~~~~~~i~~~~~~ys~~y~~~~~~~~~f~~~l~l~~~~m~~~~~s~~l~~~~v~wE~~~l~sy~Li~~~ 159 (666)
T Consensus 42 ~f~~D~lS~~lilLt~~i~~~~~~~~~~~~~~---~~~~~--l~l~l~~lil~F~~~nll~FYifFE~sLIP~~~lI~~w 116 (419)
T MTH00062 42 LFIFDSLSFYLILLVLFLGLYSQVMLVNLLSG---VSRFF--LFLSLIFAILCFCVNNSLLFWFFYELSIIPLLYLLFSE 116 (419)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99456878899999999999999999998888---99999--99999999999999799999999999999999999880
Q ss_pred CCCHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf 03445410363000221224789999999999996205989999875431000124555566666666532024553179
Q gi|254780865|r 160 SFKESAIKASMKAFVVNRIGDLGLILAISAIIYLFHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSI 239 (666)
Q Consensus 160 ~~~~~~~~a~~k~~~~~~~g~~~~l~~i~~l~~~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (666)
T Consensus 117 G~q~eR~~A~~y~l~YTl~~SlplL~~il~l~~~~gs~~~~~~~~------------------------------~~~~~ 166 (419)
T MTH00062 117 SPYSERYLASWYFLGYLLLTSLPLLLCLLYLSLVNGSFNFSEWGS------------------------------GDSVS 166 (419)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHC------------------------------CCHHH
T ss_conf 894899999999999999999999999999998658730997743------------------------------20479
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHH-CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999865433432343124000-023322100013456666777999963013578134444567777788763
Q gi|254780865|r 240 AIICLLFFLGAMGKSAQLLLHVWLPDAM-EGPTPVSALIHAATMVTAGVFLVARMSPLFELSPFVLDCITVLGCITAFFA 318 (666)
Q Consensus 240 ~~~~~l~~~g~~~K~a~~P~h~WLp~A~-~aPtpvSAllhs~~mv~~Gvy~l~r~~~~~~~~~~~~~~~~~~g~~t~~~g 318 (666)
T Consensus 167 ~~~~~~~~laFlVK~Pmfp~H~WLPkAHvEAP~~gSmiL-AGvLLKLG~YGl~R~~~~l--~~~~~~~~~~~~~~~~~~~ 243 (419)
T MTH00062 167 LIIYYVLSFIFFTKVPLFPFHTWLPIVHAEASSPVSIFL-SGYIMKLGLLGVYRFCGFI--FSGYFLGYLFLCCLLSVFF 243 (419)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCCHHHHHH-HHHHHHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999983050022157402121880889999-9999999999999999875--7467999999999999999
Q ss_pred HHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCC---CCCCHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 00111024520244321000135334456553---111003465553100012222101232111000011012776154
Q gi|254780865|r 319 ATVGLVQHDIKRVIAYSTCSQLGYMFVALGCR---AYGASIFHLFTHAFFKALLFLGSGSVIHAVAGEQDMRRMGGLYPH 395 (666)
Q Consensus 319 ~~~al~q~d~Kr~lAySsis~~G~i~~~~g~~---~~~~a~~~~~~H~~~ka~LFl~aG~vi~~~~~~~~i~~~gGl~~~ 395 (666)
T Consensus 244 ~l~al~Q~D~K~lIAYSSVsHMg~v~~Gl~~~~~~g~~ga~~~ml~HGl~ss~LF~l~~-~~Yer~~SRsl~~~kG~~~~ 322 (419)
T MTH00062 244 LITACSELDGKRWLAFLSLSHIVVPVLGLFVGDWSSIYLSFFYCLGHGLSAGLVFLLLW-CFYEVSGSRNWVLLKSGVGG 322 (419)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCCCHHHHHHHCCHHH
T ss_conf 99999863099999995088899999999980579999999999988998999999986-88725474999998150865
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 66999999988642101100000000244321788888898641024444421022113454333103424578
Q gi|254780865|r 396 LPRTCWMMIVGTLALTGFGIPETSIGFSGFFSKDIILEVAYTSSHFTFVFFLLLFAAFLTSFYSWRLMFLTFFG 469 (666)
Q Consensus 396 ~P~~~~~~~i~~lsl~G~P~~~~~~p~~gf~sk~~il~~~~~~~~~~~~~~~~~~~~~lt~~Y~~r~~~~vF~G 469 (666)
T Consensus 323 ~p~l~~~~fl~~~~nm~~P------Pslnf~gEi~l~~s~~~~~--~~~~-~~~~~~ff~~~~~l~l~~~~l~~ 387 (419)
T MTH00062 323 SLSMQVIIVFGFLSLCSFP------PTIQFFCEVFLVSSSSGVL--VYLL-FWCIYLFFGGLVPLILLGHLLIR 387 (419)
T ss_pred HHHHHHHHHHHHHHHCCCC------CCCHHHHHHHHHHHHHHHH--HHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 2899999999999971799------9514999999999999999--9999-99999999999999998978751