HHsearch alignment for GI: 254780865 and conserved domain: MTH00062

>MTH00062 ND4 NADH dehydrogenase subunit 4; Provisional.
Probab=100.00  E-value=0  Score=392.21  Aligned_cols=342  Identities=18%  Similarity=0.178  Sum_probs=280.8

Q ss_pred             EEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             78743378999999999999999997475306888661899999999999999986558999988888856889988762
Q gi|254780865|r   80 GLRIDTLSSVMFVVVNSISAVVHIYSIGYMHDDPHRPRFFSYLSFFTFAMLVLVSSDNLLQMFFGWEGVGLASYLLIGFW  159 (666)
Q Consensus        80 ~~~~D~ls~~~~~~~~~i~~~~~~ys~~y~~~~~~~~~f~~~l~l~~~~m~~~~~s~~l~~~~v~wE~~~l~sy~Li~~~  159 (666)
T Consensus        42 ~f~~D~lS~~lilLt~~i~~~~~~~~~~~~~~---~~~~~--l~l~l~~lil~F~~~nll~FYifFE~sLIP~~~lI~~w  116 (419)
T MTH00062         42 LFIFDSLSFYLILLVLFLGLYSQVMLVNLLSG---VSRFF--LFLSLIFAILCFCVNNSLLFWFFYELSIIPLLYLLFSE  116 (419)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             99456878899999999999999999998888---99999--99999999999999799999999999999999999880


Q ss_pred             CCCHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf             03445410363000221224789999999999996205989999875431000124555566666666532024553179
Q gi|254780865|r  160 SFKESAIKASMKAFVVNRIGDLGLILAISAIIYLFHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSI  239 (666)
Q Consensus       160 ~~~~~~~~a~~k~~~~~~~g~~~~l~~i~~l~~~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (666)
T Consensus       117 G~q~eR~~A~~y~l~YTl~~SlplL~~il~l~~~~gs~~~~~~~~------------------------------~~~~~  166 (419)
T MTH00062        117 SPYSERYLASWYFLGYLLLTSLPLLLCLLYLSLVNGSFNFSEWGS------------------------------GDSVS  166 (419)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHC------------------------------CCHHH
T ss_conf             894899999999999999999999999999998658730997743------------------------------20479


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCHH-CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999865433432343124000-023322100013456666777999963013578134444567777788763
Q gi|254780865|r  240 AIICLLFFLGAMGKSAQLLLHVWLPDAM-EGPTPVSALIHAATMVTAGVFLVARMSPLFELSPFVLDCITVLGCITAFFA  318 (666)
Q Consensus       240 ~~~~~l~~~g~~~K~a~~P~h~WLp~A~-~aPtpvSAllhs~~mv~~Gvy~l~r~~~~~~~~~~~~~~~~~~g~~t~~~g  318 (666)
T Consensus       167 ~~~~~~~~laFlVK~Pmfp~H~WLPkAHvEAP~~gSmiL-AGvLLKLG~YGl~R~~~~l--~~~~~~~~~~~~~~~~~~~  243 (419)
T MTH00062        167 LIIYYVLSFIFFTKVPLFPFHTWLPIVHAEASSPVSIFL-SGYIMKLGLLGVYRFCGFI--FSGYFLGYLFLCCLLSVFF  243 (419)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCCHHHHHH-HHHHHHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHH
T ss_conf             999999999999983050022157402121880889999-9999999999999999875--7467999999999999999


Q ss_pred             HHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCC---CCCCHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             00111024520244321000135334456553---111003465553100012222101232111000011012776154
Q gi|254780865|r  319 ATVGLVQHDIKRVIAYSTCSQLGYMFVALGCR---AYGASIFHLFTHAFFKALLFLGSGSVIHAVAGEQDMRRMGGLYPH  395 (666)
Q Consensus       319 ~~~al~q~d~Kr~lAySsis~~G~i~~~~g~~---~~~~a~~~~~~H~~~ka~LFl~aG~vi~~~~~~~~i~~~gGl~~~  395 (666)
T Consensus       244 ~l~al~Q~D~K~lIAYSSVsHMg~v~~Gl~~~~~~g~~ga~~~ml~HGl~ss~LF~l~~-~~Yer~~SRsl~~~kG~~~~  322 (419)
T MTH00062        244 LITACSELDGKRWLAFLSLSHIVVPVLGLFVGDWSSIYLSFFYCLGHGLSAGLVFLLLW-CFYEVSGSRNWVLLKSGVGG  322 (419)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCCCHHHHHHHCCHHH
T ss_conf             99999863099999995088899999999980579999999999988998999999986-88725474999998150865


Q ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             66999999988642101100000000244321788888898641024444421022113454333103424578
Q gi|254780865|r  396 LPRTCWMMIVGTLALTGFGIPETSIGFSGFFSKDIILEVAYTSSHFTFVFFLLLFAAFLTSFYSWRLMFLTFFG  469 (666)
Q Consensus       396 ~P~~~~~~~i~~lsl~G~P~~~~~~p~~gf~sk~~il~~~~~~~~~~~~~~~~~~~~~lt~~Y~~r~~~~vF~G  469 (666)
T Consensus       323 ~p~l~~~~fl~~~~nm~~P------Pslnf~gEi~l~~s~~~~~--~~~~-~~~~~~ff~~~~~l~l~~~~l~~  387 (419)
T MTH00062        323 SLSMQVIIVFGFLSLCSFP------PTIQFFCEVFLVSSSSGVL--VYLL-FWCIYLFFGGLVPLILLGHLLIR  387 (419)
T ss_pred             HHHHHHHHHHHHHHHCCCC------CCCHHHHHHHHHHHHHHHH--HHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             2899999999999971799------9514999999999999999--9999-99999999999999998978751