HHsearch alignment for GI: 254780865 and conserved domain: MTH00105
>MTH00105 ND2 NADH dehydrogenase subunit 2; Provisional.
Probab=100.00 E-value=0 Score=383.02 Aligned_cols=329 Identities=16% Similarity=0.254 Sum_probs=259.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 18999999999999999865589999888888568899887620344541036300022122478999999999999620
Q gi|254780865|r 117 RFFSYLSFFTFAMLVLVSSDNLLQMFFGWEGVGLASYLLIGFWSFKESAIKASMKAFVVNRIGDLGLILAISAIIYLFHS 196 (666)
Q Consensus 117 ~f~~~l~l~~~~m~~~~~s~~l~~~~v~wE~~~l~sy~Li~~~~~~~~~~~a~~k~~~~~~~g~~~~l~~i~~l~~~~gs 196 (666)
T Consensus 5 ~~ll~l~~~~~G~l~~~sS~n~~~l~v~lEl~~ls~~~l~~-~~~~~~s~eaa~KYfli~~~~S~i~L~gi~~~~~~~g~ 83 (345)
T MTH00105 5 ILIIILSTLILGTMITMISSHWLLAWIGLEMNMLAIIPILM-KKHNPRSTEAATKYFLTQATASMLLMMAIIINLMYSGQ 83 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999999999999999998899999999999999999998-28994289999999999999999999999999999837
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCC-CCCCCC
Q ss_conf 5989999875431000124555566666666532024553179999999999986543343234312400002-332210
Q gi|254780865|r 197 VDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSIAIICLLFFLGAMGKSAQLLLHVWLPDAMEG-PTPVSA 275 (666)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~K~a~~P~h~WLp~A~~a-PtpvSA 275 (666)
T Consensus 84 ~~~~~~~~~-----------------------------------~~~~li~~~l~~Klg~~PfH~WlPdv~~~~~~~~~~ 128 (345)
T MTH00105 84 WTITKITNP-----------------------------------LASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGL 128 (345)
T ss_pred HHHHHHHHH-----------------------------------HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_conf 578898779-----------------------------------999999999999980341487798999714799999
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCH
Q ss_conf 00134566667779999630135781344445677777887630011102452024432100013533445655311100
Q gi|254780865|r 276 LIHAATMVTAGVFLVARMSPLFELSPFVLDCITVLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVALGCRAYGAS 355 (666)
Q Consensus 276 llhs~~mv~~Gvy~l~r~~~~~~~~~~~~~~~~~~g~~t~~~g~~~al~q~d~Kr~lAySsis~~G~i~~~~g~~~~~~a 355 (666)
T Consensus 129 ~l-~t~~Kia~l~il~~~~~~~~-----~~il~~~~~lS~i~G~~~al~Q~~lKrlLAYSSIsh~G~ml~~l~~~~-~~~ 201 (345)
T MTH00105 129 IL-LTWQKLAPLSILYQISPSIN-----PNLLLTMAILSILVGGWGGLNQTQLRKILAYSSIAHMGWMTAILTYNP-TLT 201 (345)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH-HHH
T ss_conf 99-99999999999999998730-----999999999999999999986601318999999988999999999849-999
Q ss_pred HHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 34655531000122221012321110000110127761546699999998864210110000000024432178888889
Q gi|254780865|r 356 IFHLFTHAFFKALLFLGSGSVIHAVAGEQDMRRMGGLYPHLPRTCWMMIVGTLALTGFGIPETSIGFSGFFSKDIILEVA 435 (666)
Q Consensus 356 ~~~~~~H~~~ka~LFl~aG~vi~~~~~~~~i~~~gGl~~~~P~~~~~~~i~~lsl~G~P~~~~~~p~~gf~sk~~il~~~ 435 (666)
T Consensus 202 ~~y~~~Y~~~~~~lf~~~----~-~~~~~~i~~l~gl~~~~p~~~~~~~i~llSLaGiP------P~~GF~~K~~ii~~~ 270 (345)
T MTH00105 202 LLNLTIYIIMTLTMFMLL----M-LNSSTTTLSLSHTWNKTPLMTSLILLTLLSLGGLP------PLTGFMPKWMIIQEL 270 (345)
T ss_pred HHHHHHHHHHHHHHHHHH----H-HHCCCCHHHHHCHHHHHHHHHHHHHHHHHHHHCCH------HHHHHHHHHHHHHHH
T ss_conf 999999999999999999----9-95766299885755313999999999999985322------656899999999999
Q ss_pred HHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf 86410244444210221134543331034245787443321000000135533320245656663
Q gi|254780865|r 436 YTSSHFTFVFFLLLFAAFLTSFYSWRLMFLTFFGKMRVDKDISHKIHESPLVMQIPLFILAIGSI 500 (666)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~lt~~Y~~r~~~~vF~G~~~~~~~~~~~~~e~~~~m~~pl~vLa~~si 500 (666)
T Consensus 271 i~~~~~-~l~~ilil~S~isl~yYlRii~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 334 (345)
T MTH00105 271 TKNNNI-IMPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFENTKPTTLLPTLIILST 334 (345)
T ss_pred HHCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 981849-9999999999999999999999999967999997646117468984189999999999