HHsearch alignment for GI: 254780865 and conserved domain: MTH00110
>MTH00110 ND4 NADH dehydrogenase subunit 4; Provisional.
Probab=100.00 E-value=0 Score=562.01 Aligned_cols=446 Identities=17% Similarity=0.263 Sum_probs=349.8
Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEECCCCCEEEEEEEEH
Q ss_conf 999999999999997301242147899999-9999999999999999725898528999753101308822357787433
Q gi|254780865|r 7 VIVFLPLIGAVFSGFFGRLMGKQFADIFTS-LLMVIGAFLSWYVFYEIGFGHDVQVVKREIFPWIIFDGLDIPWGLRIDT 85 (666)
Q Consensus 7 l~~~~Pl~~a~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wi~~~~~~~~~~~~~D~ 85 (666)
T Consensus 2 lkil~p~~~~~~l~~~~~~---~~-~w~~~~~~~~~~~~~s~~~~~~~~---~~--------------~~~~~~~~~~D~ 60 (459)
T MTH00110 2 LKIIIPTIMLIPLTWLSKN---NM-IWINTTTYSLLISLISLLLLNQLN---DN--------------SLNFSLLFFSDS 60 (459)
T ss_pred HHHHHHHHHHHHHHHHCCC---HH-HHHHHHHHHHHHHHHHHHHHHCCC---CC--------------CCCHHHHHHCCH
T ss_conf 7689999999999999064---88-999999999999999999995678---77--------------643115760148
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCC-C-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
Q ss_conf 78999999999999999997475306888-6-618999999999999999865589999888888568899887620344
Q gi|254780865|r 86 LSSVMFVVVNSISAVVHIYSIGYMHDDPH-R-PRFFSYLSFFTFAMLVLVSSDNLLQMFFGWEGVGLASYLLIGFWSFKE 163 (666)
Q Consensus 86 ls~~~~~~~~~i~~~~~~ys~~y~~~~~~-~-~~f~~~l~l~~~~m~~~~~s~~l~~~~v~wE~~~l~sy~Li~~~~~~~ 163 (666)
T Consensus 61 lS~~li~Ls~~i~~l~~laS~~~~~~~~~~~~~~f~~~~l~l~~~l~~~F~~~dl~~FYiffE~~LIP~~~LI~~wG~~~ 140 (459)
T MTH00110 61 LSTPLLILTTWLLPLMLMASQNHLSKEPLTRKKLYITMLILLQLFLIMTFTATELIMFYILFEATLIPTLIIITRWGNQT 140 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
T ss_conf 68999999999999999996898841751256799999999999999999984899999999999999999999849957
Q ss_pred HHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 54103630002212247899999999999962059899998754310001245555666666665320245531799999
Q gi|254780865|r 164 SAIKASMKAFVVNRIGDLGLILAISAIIYLFHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSIAIIC 243 (666)
Q Consensus 164 ~~~~a~~k~~~~~~~g~~~~l~~i~~l~~~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (666)
T Consensus 141 er~~A~~~~~~yT~~gSl~lL~~i~~l~~~~gs~~~~~~~~~~~~~------------------------~~~~~~~~~~ 196 (459)
T MTH00110 141 ERLNAGLYFLFYTLVGSLPLLVALLYIQNNLGSLNFLLLQLWAQPL------------------------PNSWSNNLLW 196 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHC------------------------CHHHHHHHHH
T ss_conf 9999999999999999999999999999975986099999887514------------------------5047999999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCHH-CCCCCCCCCHHHHHHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999865433432343124000-023322100013456666777999963013-578134444567777788763001
Q gi|254780865|r 244 LLFFLGAMGKSAQLLLHVWLPDAM-EGPTPVSALIHAATMVTAGVFLVARMSPLF-ELSPFVLDCITVLGCITAFFAATV 321 (666)
Q Consensus 244 ~l~~~g~~~K~a~~P~h~WLp~A~-~aPtpvSAllhs~~mv~~Gvy~l~r~~~~~-~~~~~~~~~~~~~g~~t~~~g~~~ 321 (666)
T Consensus 197 l~~~laF~vK~p~fp~H~WLP~AhveAP~~gSmiL-AgvLlKlG~YGl~R~~~~~~~~~~~~~~~~i~l~l~g~i~~s~~ 275 (459)
T MTH00110 197 LACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVL-AAILLKLGGYGMMRITILLNPLTEFMAYPFLMLSLWGMIMTSSI 275 (459)
T ss_pred HHHHHHHHHHCCCCCCCCCCCHHHCCCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999974888886657253250975999999-99999998999999999984789999999999999999999999
Q ss_pred HHCCCCCHHHHHHHHHCCCCCCCCCCCCC---CCCCHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 11024520244321000135334456553---111003465553100012222101232111000011012776154669
Q gi|254780865|r 322 GLVQHDIKRVIAYSTCSQLGYMFVALGCR---AYGASIFHLFTHAFFKALLFLGSGSVIHAVAGEQDMRRMGGLYPHLPR 398 (666)
Q Consensus 322 al~q~d~Kr~lAySsis~~G~i~~~~g~~---~~~~a~~~~~~H~~~ka~LFl~aG~vi~~~~~~~~i~~~gGl~~~~P~ 398 (666)
T Consensus 276 ~l~Q~DlK~LiAYSSVsHMG~v~~gi~~~~~~g~~Ga~~~miaHgl~ss~LF~lag~-~y~r~~tR~l~~~~Gl~~~~P~ 354 (459)
T MTH00110 276 CLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANS-NYERIHSRTMILARGLQTLLPL 354 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCCEEHHHHCCHHHHHHH
T ss_conf 999999999999977999999999999755899999999999999999999998879-9886186067871980456589
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCH
Q ss_conf 99999988642101100000000244321788888898641024444421022113454333103424578744332100
Q gi|254780865|r 399 TCWMMIVGTLALTGFGIPETSIGFSGFFSKDIILEVAYTSSHFTFVFFLLLFAAFLTSFYSWRLMFLTFFGKMRVDKDIS 478 (666)
Q Consensus 399 ~~~~~~i~~lsl~G~P~~~~~~p~~gf~sk~~il~~~~~~~~~~~~~~~~~~~~~lt~~Y~~r~~~~vF~G~~~~~~~~~ 478 (666)
T Consensus 355 ~~~~~~l~~lan~g~P------p~~~F~gE~~il~~~~~~~~--~~~~~~~~~~~lsa~Ysl~l~~~~~~G~~~~~~~~~ 426 (459)
T MTH00110 355 MATWWLLASLTNLALP------PTINLIGELFVIMSSFSWSN--ITIILMGLNIVITALYSLYMLITTQRGKLTHHINNI 426 (459)
T ss_pred HHHHHHHHHHHHCCCC------CCCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 9999999999871798------74648999999999999859--999999999999999999999998779980212478
Q ss_pred HHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 00001355333202456566632100000124
Q gi|254780865|r 479 HKIHESPLVMQIPLFILAIGSIFFGFIFHDVF 510 (666)
Q Consensus 479 ~~~~e~~~~m~~pl~vLa~~si~~G~~~~~~~ 510 (666)
T Consensus 427 ---~~~~~re~~~~~~h~~pl~~l~l~P~~il 455 (459)
T MTH00110 427 ---KPSFTRENTLMALHLLPLLLLSLNPKIIL 455 (459)
T ss_pred ---CCCCHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_conf ---99608899999999999999997879871