HHsearch alignment for GI: 254780865 and conserved domain: MTH00110

>MTH00110 ND4 NADH dehydrogenase subunit 4; Provisional.
Probab=100.00  E-value=0  Score=562.01  Aligned_cols=446  Identities=17%  Similarity=0.263  Sum_probs=349.8

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEECCCCCEEEEEEEEH
Q ss_conf             999999999999997301242147899999-9999999999999999725898528999753101308822357787433
Q gi|254780865|r    7 VIVFLPLIGAVFSGFFGRLMGKQFADIFTS-LLMVIGAFLSWYVFYEIGFGHDVQVVKREIFPWIIFDGLDIPWGLRIDT   85 (666)
Q Consensus         7 l~~~~Pl~~a~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wi~~~~~~~~~~~~~D~   85 (666)
T Consensus         2 lkil~p~~~~~~l~~~~~~---~~-~w~~~~~~~~~~~~~s~~~~~~~~---~~--------------~~~~~~~~~~D~   60 (459)
T MTH00110          2 LKIIIPTIMLIPLTWLSKN---NM-IWINTTTYSLLISLISLLLLNQLN---DN--------------SLNFSLLFFSDS   60 (459)
T ss_pred             HHHHHHHHHHHHHHHHCCC---HH-HHHHHHHHHHHHHHHHHHHHHCCC---CC--------------CCCHHHHHHCCH
T ss_conf             7689999999999999064---88-999999999999999999995678---77--------------643115760148


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCC-C-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
Q ss_conf             78999999999999999997475306888-6-618999999999999999865589999888888568899887620344
Q gi|254780865|r   86 LSSVMFVVVNSISAVVHIYSIGYMHDDPH-R-PRFFSYLSFFTFAMLVLVSSDNLLQMFFGWEGVGLASYLLIGFWSFKE  163 (666)
Q Consensus        86 ls~~~~~~~~~i~~~~~~ys~~y~~~~~~-~-~~f~~~l~l~~~~m~~~~~s~~l~~~~v~wE~~~l~sy~Li~~~~~~~  163 (666)
T Consensus        61 lS~~li~Ls~~i~~l~~laS~~~~~~~~~~~~~~f~~~~l~l~~~l~~~F~~~dl~~FYiffE~~LIP~~~LI~~wG~~~  140 (459)
T MTH00110         61 LSTPLLILTTWLLPLMLMASQNHLSKEPLTRKKLYITMLILLQLFLIMTFTATELIMFYILFEATLIPTLIIITRWGNQT  140 (459)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
T ss_conf             68999999999999999996898841751256799999999999999999984899999999999999999999849957


Q ss_pred             HHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf             54103630002212247899999999999962059899998754310001245555666666665320245531799999
Q gi|254780865|r  164 SAIKASMKAFVVNRIGDLGLILAISAIIYLFHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSIAIIC  243 (666)
Q Consensus       164 ~~~~a~~k~~~~~~~g~~~~l~~i~~l~~~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (666)
T Consensus       141 er~~A~~~~~~yT~~gSl~lL~~i~~l~~~~gs~~~~~~~~~~~~~------------------------~~~~~~~~~~  196 (459)
T MTH00110        141 ERLNAGLYFLFYTLVGSLPLLVALLYIQNNLGSLNFLLLQLWAQPL------------------------PNSWSNNLLW  196 (459)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHC------------------------CHHHHHHHHH
T ss_conf             9999999999999999999999999999975986099999887514------------------------5047999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCHH-CCCCCCCCCHHHHHHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999865433432343124000-023322100013456666777999963013-578134444567777788763001
Q gi|254780865|r  244 LLFFLGAMGKSAQLLLHVWLPDAM-EGPTPVSALIHAATMVTAGVFLVARMSPLF-ELSPFVLDCITVLGCITAFFAATV  321 (666)
Q Consensus       244 ~l~~~g~~~K~a~~P~h~WLp~A~-~aPtpvSAllhs~~mv~~Gvy~l~r~~~~~-~~~~~~~~~~~~~g~~t~~~g~~~  321 (666)
T Consensus       197 l~~~laF~vK~p~fp~H~WLP~AhveAP~~gSmiL-AgvLlKlG~YGl~R~~~~~~~~~~~~~~~~i~l~l~g~i~~s~~  275 (459)
T MTH00110        197 LACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVL-AAILLKLGGYGMMRITILLNPLTEFMAYPFLMLSLWGMIMTSSI  275 (459)
T ss_pred             HHHHHHHHHHCCCCCCCCCCCHHHCCCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999974888886657253250975999999-99999998999999999984789999999999999999999999


Q ss_pred             HHCCCCCHHHHHHHHHCCCCCCCCCCCCC---CCCCHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf             11024520244321000135334456553---111003465553100012222101232111000011012776154669
Q gi|254780865|r  322 GLVQHDIKRVIAYSTCSQLGYMFVALGCR---AYGASIFHLFTHAFFKALLFLGSGSVIHAVAGEQDMRRMGGLYPHLPR  398 (666)
Q Consensus       322 al~q~d~Kr~lAySsis~~G~i~~~~g~~---~~~~a~~~~~~H~~~ka~LFl~aG~vi~~~~~~~~i~~~gGl~~~~P~  398 (666)
T Consensus       276 ~l~Q~DlK~LiAYSSVsHMG~v~~gi~~~~~~g~~Ga~~~miaHgl~ss~LF~lag~-~y~r~~tR~l~~~~Gl~~~~P~  354 (459)
T MTH00110        276 CLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANS-NYERIHSRTMILARGLQTLLPL  354 (459)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCCEEHHHHCCHHHHHHH
T ss_conf             999999999999977999999999999755899999999999999999999998879-9886186067871980456589


Q ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCH
Q ss_conf             99999988642101100000000244321788888898641024444421022113454333103424578744332100
Q gi|254780865|r  399 TCWMMIVGTLALTGFGIPETSIGFSGFFSKDIILEVAYTSSHFTFVFFLLLFAAFLTSFYSWRLMFLTFFGKMRVDKDIS  478 (666)
Q Consensus       399 ~~~~~~i~~lsl~G~P~~~~~~p~~gf~sk~~il~~~~~~~~~~~~~~~~~~~~~lt~~Y~~r~~~~vF~G~~~~~~~~~  478 (666)
T Consensus       355 ~~~~~~l~~lan~g~P------p~~~F~gE~~il~~~~~~~~--~~~~~~~~~~~lsa~Ysl~l~~~~~~G~~~~~~~~~  426 (459)
T MTH00110        355 MATWWLLASLTNLALP------PTINLIGELFVIMSSFSWSN--ITIILMGLNIVITALYSLYMLITTQRGKLTHHINNI  426 (459)
T ss_pred             HHHHHHHHHHHHCCCC------CCCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf             9999999999871798------74648999999999999859--999999999999999999999998779980212478


Q ss_pred             HHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf             00001355333202456566632100000124
Q gi|254780865|r  479 HKIHESPLVMQIPLFILAIGSIFFGFIFHDVF  510 (666)
Q Consensus       479 ~~~~e~~~~m~~pl~vLa~~si~~G~~~~~~~  510 (666)
T Consensus       427 ---~~~~~re~~~~~~h~~pl~~l~l~P~~il  455 (459)
T MTH00110        427 ---KPSFTRENTLMALHLLPLLLLSLNPKIIL  455 (459)
T ss_pred             ---CCCCHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_conf             ---99608899999999999999997879871