HHsearch alignment for GI: 254780865 and conserved domain: MTH00112

>MTH00112 ND2 NADH dehydrogenase subunit 2; Provisional.
Probab=100.00  E-value=0  Score=381.21  Aligned_cols=298  Identities=19%  Similarity=0.297  Sum_probs=245.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCHH
Q ss_conf             99999999999998655899998888885688998876203445410363000221224789999999999996205989
Q gi|254780865|r  121 YLSFFTFAMLVLVSSDNLLQMFFGWEGVGLASYLLIGFWSFKESAIKASMKAFVVNRIGDLGLILAISAIIYLFHSVDFD  200 (666)
Q Consensus       121 ~l~l~~~~m~~~~~s~~l~~~~v~wE~~~l~sy~Li~~~~~~~~~~~a~~k~~~~~~~g~~~~l~~i~~l~~~~gs~~~~  200 (666)
T Consensus         8 ~~~~lilG~~~~~sS~~~~~~wvglEl~~ls~~~Li~~-~~~~~s~Ea~~KYFl~~~~~S~~~L~g~~l~y~~tg~~~i~   86 (345)
T MTH00112          8 ITTSLILGTLITISSNHWLLAWTGLEINTLAIIPLISK-SHHPRAIEAATKYFLTQAAASALILFSSTTNAWNTGQWDIT   86 (345)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
T ss_conf             99999999999999989999999999999999999986-99951899999999999999999999999999998380676


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCHHHH
Q ss_conf             99987543100012455556666666653202455317999999999998654334323431240000233221000134
Q gi|254780865|r  201 AVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSIAIICLLFFLGAMGKSAQLLLHVWLPDAMEGPTPVSALIHAA  280 (666)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~K~a~~P~h~WLp~A~~aPtpvSAllhs~  280 (666)
T Consensus        87 ~~~~~-----------------------------------~~~~li~~~l~~Klg~~PfH~W~Pdv~~g~~~~~~~~ls-  130 (345)
T MTH00112         87 QLTNP-----------------------------------TSCTILTLALAMKLGLAPFHFWLPEVLQGSTTTTALILL-  130 (345)
T ss_pred             HHCCH-----------------------------------HHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCHHHHHHHH-
T ss_conf             52126-----------------------------------899999999999981342441099998579688999999-


Q ss_pred             HHHHHHHHHHHH-HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf             566667779999-6301357813444456777778876300111024520244321000135334456553111003465
Q gi|254780865|r  281 TMVTAGVFLVAR-MSPLFELSPFVLDCITVLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVALGCRAYGASIFHL  359 (666)
Q Consensus       281 ~mv~~Gvy~l~r-~~~~~~~~~~~~~~~~~~g~~t~~~g~~~al~q~d~Kr~lAySsis~~G~i~~~~g~~~~~~a~~~~  359 (666)
T Consensus       131 t~~Kia~~~il~~~~~~~-----~~~il~~~~~lS~~vG~~~al~Q~~iKrlLAYSSIsh~G~ml~~l~~~~-~~~~~~~  204 (345)
T MTH00112        131 TWQKLAPLTLLLMTSNSL-----NTTLLLTLAILSTLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYAP-KLTLLTF  204 (345)
T ss_pred             HHHHHHHHHHHHHHHCCC-----CHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
T ss_conf             999999999999982221-----0499999999999999999984200899999999999999999999869-9999999


Q ss_pred             HHHHCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             55310001222210123211100001101277615466999999988642101100000000244321788888898641
Q gi|254780865|r  360 FTHAFFKALLFLGSGSVIHAVAGEQDMRRMGGLYPHLPRTCWMMIVGTLALTGFGIPETSIGFSGFFSKDIILEVAYTSS  439 (666)
Q Consensus       360 ~~H~~~ka~LFl~aG~vi~~~~~~~~i~~~gGl~~~~P~~~~~~~i~~lsl~G~P~~~~~~p~~gf~sk~~il~~~~~~~  439 (666)
T Consensus       205 ~~Y~i~~~~~f~~~~-----~~~~~~i~~l~~l~~~~p~~~~~~~i~llSLaGlP------P~~GF~~K~~i~~~~i~~~  273 (345)
T MTH00112        205 YLYIIMTTTMFLTLN-----TTSTKTIKDMGTSWTKSPMLNATLMLTLLSLAGLP------PLTGFMPKWLILQELTKQN  273 (345)
T ss_pred             HHHHHHHHHHHHHHH-----HHCCCCHHHHHCCHHCCHHHHHHHHHHHHHCCCCC------CCCHHHHHHHHHHHHHHCC
T ss_conf             999999999999999-----97677599872824100999999999998726565------2115889999999999848


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             0244444210221134543331034245787443
Q gi|254780865|r  440 HFTFVFFLLLFAAFLTSFYSWRLMFLTFFGKMRV  473 (666)
Q Consensus       440 ~~~~~~~~~~~~~~lt~~Y~~r~~~~vF~G~~~~  473 (666)
T Consensus       274 ~~-~l~~i~il~S~isl~yYlRi~y~~~~~~~~~  306 (345)
T MTH00112        274 MT-PTATTMAMLSLLSLFFYLRLAYYSTITLPPN  306 (345)
T ss_pred             HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             49-9999999999999999999999999867999