HHsearch alignment for GI: 254780865 and conserved domain: MTH00127
>MTH00127 ND4 NADH dehydrogenase subunit 4; Provisional.
Probab=100.00 E-value=0 Score=539.17 Aligned_cols=364 Identities=17% Similarity=0.243 Sum_probs=314.4
Q ss_pred EEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 35778743378999999999999999997475306888-661-8999999999999999865589999888888568899
Q gi|254780865|r 77 IPWGLRIDTLSSVMFVVVNSISAVVHIYSIGYMHDDPH-RPR-FFSYLSFFTFAMLVLVSSDNLLQMFFGWEGVGLASYL 154 (666)
Q Consensus 77 ~~~~~~~D~ls~~~~~~~~~i~~~~~~ys~~y~~~~~~-~~~-f~~~l~l~~~~m~~~~~s~~l~~~~v~wE~~~l~sy~ 154 (666)
T Consensus 53 ~~~~lg~D~lS~~li~Lt~~l~~l~ilaS~~~~~~~~~~~~~~f~~l~l~l~~~li~~F~s~dl~lFYiffE~~LIP~~~ 132 (459)
T MTH00127 53 LNPYMATDPLSTPLLVLTCWLLPLMILASQNHTSPEPINRQRTYITLLTSLQIFLILAFGATEIIMFYVMFEATLIPTLI 132 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 63998376879999999999999999995588621620058899999999999999999997899999999999999999
Q ss_pred HHHHHCCCHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 88762034454103630002212247899999999999962059899998754310001245555666666665320245
Q gi|254780865|r 155 LIGFWSFKESAIKASMKAFVVNRIGDLGLILAISAIIYLFHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVH 234 (666)
Q Consensus 155 Li~~~~~~~~~~~a~~k~~~~~~~g~~~~l~~i~~l~~~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (666)
T Consensus 133 LI~~WG~q~eR~~A~~~~l~YTl~gSl~lL~~i~~l~~~~gs~~~~~l~~~~~~------------------------~~ 188 (459)
T MTH00127 133 IITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNSTGTLSMLTLQYSQPL------------------------QL 188 (459)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHC------------------------CC
T ss_conf 999828948899999999999999999999999999985588409999874330------------------------12
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH-CCCCCCCCCHHHHHHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHH
Q ss_conf 531799999999999865433432343124000-02332210001345666677799996301-3578134444567777
Q gi|254780865|r 235 PHDSIAIICLLFFLGAMGKSAQLLLHVWLPDAM-EGPTPVSALIHAATMVTAGVFLVARMSPL-FELSPFVLDCITVLGC 312 (666)
Q Consensus 235 ~~~~~~~~~~l~~~g~~~K~a~~P~h~WLp~A~-~aPtpvSAllhs~~mv~~Gvy~l~r~~~~-~~~~~~~~~~~~~~g~ 312 (666)
T Consensus 189 ~~~~~~~~~~~~~laF~vK~Plfp~H~WLPkAHvEAP~~gSmiL-AgvLlKlG~YGliR~~~~l~p~~~~~~~~~i~l~l 267 (459)
T MTH00127 189 SSWGDKLWWAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMVL-AAVLLKLGGYGMMRMMVMLDPLTKELAYPFIILAL 267 (459)
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 04789999999999999965888886658364351974999999-99999888999999999885889999999999999
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCC---CCCCHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 78876300111024520244321000135334456553---111003465553100012222101232111000011012
Q gi|254780865|r 313 ITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVALGCR---AYGASIFHLFTHAFFKALLFLGSGSVIHAVAGEQDMRRM 389 (666)
Q Consensus 313 ~t~~~g~~~al~q~d~Kr~lAySsis~~G~i~~~~g~~---~~~~a~~~~~~H~~~ka~LFl~aG~vi~~~~~~~~i~~~ 389 (666)
T Consensus 268 ~g~i~~slicl~Q~DlK~liAYSSVsHMG~v~~gi~~~~~~g~~Gal~~miaHGl~ss~LF~lag~-~y~r~~tR~i~~~ 346 (459)
T MTH00127 268 WGIIMTGSICLRQTDLKSLIAYSSVSHMGLVAGGILIQTPWGFTGALILMIAHGLTSSALFCLANT-NYERTHSRTMLLA 346 (459)
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCCCCHHHH
T ss_conf 999999999998017689988866999999999999766778999999999999999999999999-9995176158883
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 77615466999999988642101100000000244321788888898641024444421022113454333103424578
Q gi|254780865|r 390 GGLYPHLPRTCWMMIVGTLALTGFGIPETSIGFSGFFSKDIILEVAYTSSHFTFVFFLLLFAAFLTSFYSWRLMFLTFFG 469 (666)
Q Consensus 390 gGl~~~~P~~~~~~~i~~lsl~G~P~~~~~~p~~gf~sk~~il~~~~~~~~~~~~~~~~~~~~~lt~~Y~~r~~~~vF~G 469 (666)
T Consensus 347 ~Gl~~~~P~~~~~~~l~~lan~glP------p~~nF~gE~~i~~~~~~~~~--~~~~~~~~~~~lsa~YsL~l~~~~~~G 418 (459)
T MTH00127 347 RGLQMILPLMATWWFIASLANLALP------PLPNLMGELMIITSLFNWSP--WTLALTGAGTLITAGYSLYMFLMTQRG 418 (459)
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCC------CCCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9978775899999999999872798------74648899999999999859--999999999999999999999996649
Q ss_pred CCCCC
Q ss_conf 74433
Q gi|254780865|r 470 KMRVD 474 (666)
Q Consensus 470 ~~~~~ 474 (666)
T Consensus 419 ~~~~~ 423 (459)
T MTH00127 419 PLPAH 423 (459)
T ss_pred CCHHH
T ss_conf 98040