HHsearch alignment for GI: 254780865 and conserved domain: MTH00150

>MTH00150 ND4 NADH dehydrogenase subunit 4; Provisional.
Probab=100.00  E-value=0  Score=581.70  Aligned_cols=361  Identities=19%  Similarity=0.264  Sum_probs=323.4

Q ss_pred             CEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             23577874337899999999999999999747530688866189999999999999998655899998888885688998
Q gi|254780865|r   76 DIPWGLRIDTLSSVMFVVVNSISAVVHIYSIGYMHDDPHRPRFFSYLSFFTFAMLVLVSSDNLLQMFFGWEGVGLASYLL  155 (666)
Q Consensus        76 ~~~~~~~~D~ls~~~~~~~~~i~~~~~~ys~~y~~~~~~~~~f~~~l~l~~~~m~~~~~s~~l~~~~v~wE~~~l~sy~L  155 (666)
T Consensus        46 ~~~~~f~~D~lS~~~i~L~~~i~~l~~l~S~~~~~~~~~~~~f~~l~lll~~~m~~~f~s~dl~~fyif~E~~lip~~~L  125 (447)
T MTH00150         46 SLNGLFSVDSMSGLLIFLSLWISGLMLLASQYSVKLENKSSSFSLCVLLLCLILVLAFSSSNFFMFYIFFEASLIPTLLL  125 (447)
T ss_pred             HHCCHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             42442201250699999999999999999889986053116999999999999999999979999999999999999999


Q ss_pred             HHHHCCCHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             87620344541036300022122478999999999999620598999987543100012455556666666653202455
Q gi|254780865|r  156 IGFWSFKESAIKASMKAFVVNRIGDLGLILAISAIIYLFHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHP  235 (666)
Q Consensus       156 i~~~~~~~~~~~a~~k~~~~~~~g~~~~l~~i~~l~~~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (666)
T Consensus       126 I~~~g~~~~~~~A~~~~~~~t~~gsl~lL~~i~~ly~~~gs~~~~~~~~~~~~---------------------------  178 (447)
T MTH00150        126 IIGWGYQPERLQAGMYMMLYTVGASLPLLLVLLWLSVSYGSSFMLLISYLLSY---------------------------  178 (447)
T ss_pred             HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCH---------------------------
T ss_conf             99838987999999999999999999999999999998087489999987221---------------------------


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH-CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHH
Q ss_conf             31799999999999865433432343124000-02332210001345666677799996301357-81344445677777
Q gi|254780865|r  236 HDSIAIICLLFFLGAMGKSAQLLLHVWLPDAM-EGPTPVSALIHAATMVTAGVFLVARMSPLFEL-SPFVLDCITVLGCI  313 (666)
Q Consensus       236 ~~~~~~~~~l~~~g~~~K~a~~P~h~WLp~A~-~aPtpvSAllhs~~mv~~Gvy~l~r~~~~~~~-~~~~~~~~~~~g~~  313 (666)
T Consensus       179 -~~~~~~~~~~~l~f~vK~p~fPfH~WLPdAh~eAP~~~S~lL-agvl~K~G~ygliR~~~~~~~~~~~~~~~l~~l~~~  256 (447)
T MTH00150        179 -SVMWLWGLGVFLAFLVKLPMYPFHLWLPKAHVEAPVAGSMIL-AGVLLKLGGYGIMRMMSVFNLSSSSFSVLLISLSLW  256 (447)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCHHHHHHH-HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf             -079999999999999983898211107632364876999999-999999999999999985100189999999999999


Q ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCC---CCCCHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf             8876300111024520244321000135334456553---1110034655531000122221012321110000110127
Q gi|254780865|r  314 TAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVALGCR---AYGASIFHLFTHAFFKALLFLGSGSVIHAVAGEQDMRRMG  390 (666)
Q Consensus       314 t~~~g~~~al~q~d~Kr~lAySsis~~G~i~~~~g~~---~~~~a~~~~~~H~~~ka~LFl~aG~vi~~~~~~~~i~~~g  390 (666)
T Consensus       257 ~~v~g~l~al~Q~DlKrllAYSSIshmG~il~gi~~~~~~g~~gal~~mi~Hgl~~~~LF~~~g~-i~~~~~tr~i~~~~  335 (447)
T MTH00150        257 GGVLTSIICLRQSDLKSLIAYSSVGHMSLVLAGVLSNTSWGWEGALIMMVSHGFCSSGLFCLANL-TYEKVHSRSLFLMK  335 (447)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCCEEHHHCC
T ss_conf             99999999999999869998970987899999998237899999999999999999999999748-87325876557339


Q ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             76154669999999886421011000000002443217888888986410244444210221134543331034245787
Q gi|254780865|r  391 GLYPHLPRTCWMMIVGTLALTGFGIPETSIGFSGFFSKDIILEVAYTSSHFTFVFFLLLFAAFLTSFYSWRLMFLTFFGK  470 (666)
Q Consensus       391 Gl~~~~P~~~~~~~i~~lsl~G~P~~~~~~p~~gf~sk~~il~~~~~~~~~~~~~~~~~~~~~lt~~Y~~r~~~~vF~G~  470 (666)
T Consensus       336 Gl~~~~P~~~~~~~i~~la~~GiP------p~~gF~se~~i~~~~~~~~~--~~~~~~~l~~~lsa~Ysl~l~~~~~~G~  407 (447)
T MTH00150        336 GMLNVYPMLSLWWFLFCIANMGAP------PFLNLLGEIMLFPSLYFYSP--WFLVILGLMVFLSGLYNLYLYTSIQHGS  407 (447)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHCCC------CCCHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             984420899999999999975143------10509999999999999979--9999999999999999999999975798


Q ss_pred             CCCC
Q ss_conf             4433
Q gi|254780865|r  471 MRVD  474 (666)
Q Consensus       471 ~~~~  474 (666)
T Consensus       408 ~~~~  411 (447)
T MTH00150        408 VSSF  411 (447)
T ss_pred             CCCC
T ss_conf             8423