HHsearch alignment for GI: 254780865 and conserved domain: MTH00150
>MTH00150 ND4 NADH dehydrogenase subunit 4; Provisional.
Probab=100.00 E-value=0 Score=581.70 Aligned_cols=361 Identities=19% Similarity=0.264 Sum_probs=323.4
Q ss_pred CEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 23577874337899999999999999999747530688866189999999999999998655899998888885688998
Q gi|254780865|r 76 DIPWGLRIDTLSSVMFVVVNSISAVVHIYSIGYMHDDPHRPRFFSYLSFFTFAMLVLVSSDNLLQMFFGWEGVGLASYLL 155 (666)
Q Consensus 76 ~~~~~~~~D~ls~~~~~~~~~i~~~~~~ys~~y~~~~~~~~~f~~~l~l~~~~m~~~~~s~~l~~~~v~wE~~~l~sy~L 155 (666)
T Consensus 46 ~~~~~f~~D~lS~~~i~L~~~i~~l~~l~S~~~~~~~~~~~~f~~l~lll~~~m~~~f~s~dl~~fyif~E~~lip~~~L 125 (447)
T MTH00150 46 SLNGLFSVDSMSGLLIFLSLWISGLMLLASQYSVKLENKSSSFSLCVLLLCLILVLAFSSSNFFMFYIFFEASLIPTLLL 125 (447)
T ss_pred HHCCHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 42442201250699999999999999999889986053116999999999999999999979999999999999999999
Q ss_pred HHHHCCCHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 87620344541036300022122478999999999999620598999987543100012455556666666653202455
Q gi|254780865|r 156 IGFWSFKESAIKASMKAFVVNRIGDLGLILAISAIIYLFHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHP 235 (666)
Q Consensus 156 i~~~~~~~~~~~a~~k~~~~~~~g~~~~l~~i~~l~~~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (666)
T Consensus 126 I~~~g~~~~~~~A~~~~~~~t~~gsl~lL~~i~~ly~~~gs~~~~~~~~~~~~--------------------------- 178 (447)
T MTH00150 126 IIGWGYQPERLQAGMYMMLYTVGASLPLLLVLLWLSVSYGSSFMLLISYLLSY--------------------------- 178 (447)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCH---------------------------
T ss_conf 99838987999999999999999999999999999998087489999987221---------------------------
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH-CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHH
Q ss_conf 31799999999999865433432343124000-02332210001345666677799996301357-81344445677777
Q gi|254780865|r 236 HDSIAIICLLFFLGAMGKSAQLLLHVWLPDAM-EGPTPVSALIHAATMVTAGVFLVARMSPLFEL-SPFVLDCITVLGCI 313 (666)
Q Consensus 236 ~~~~~~~~~l~~~g~~~K~a~~P~h~WLp~A~-~aPtpvSAllhs~~mv~~Gvy~l~r~~~~~~~-~~~~~~~~~~~g~~ 313 (666)
T Consensus 179 -~~~~~~~~~~~l~f~vK~p~fPfH~WLPdAh~eAP~~~S~lL-agvl~K~G~ygliR~~~~~~~~~~~~~~~l~~l~~~ 256 (447)
T MTH00150 179 -SVMWLWGLGVFLAFLVKLPMYPFHLWLPKAHVEAPVAGSMIL-AGVLLKLGGYGIMRMMSVFNLSSSSFSVLLISLSLW 256 (447)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCHHHHHHH-HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf -079999999999999983898211107632364876999999-999999999999999985100189999999999999
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCC---CCCCHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 8876300111024520244321000135334456553---1110034655531000122221012321110000110127
Q gi|254780865|r 314 TAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVALGCR---AYGASIFHLFTHAFFKALLFLGSGSVIHAVAGEQDMRRMG 390 (666)
Q Consensus 314 t~~~g~~~al~q~d~Kr~lAySsis~~G~i~~~~g~~---~~~~a~~~~~~H~~~ka~LFl~aG~vi~~~~~~~~i~~~g 390 (666)
T Consensus 257 ~~v~g~l~al~Q~DlKrllAYSSIshmG~il~gi~~~~~~g~~gal~~mi~Hgl~~~~LF~~~g~-i~~~~~tr~i~~~~ 335 (447)
T MTH00150 257 GGVLTSIICLRQSDLKSLIAYSSVGHMSLVLAGVLSNTSWGWEGALIMMVSHGFCSSGLFCLANL-TYEKVHSRSLFLMK 335 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCCEEHHHCC
T ss_conf 99999999999999869998970987899999998237899999999999999999999999748-87325876557339
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 76154669999999886421011000000002443217888888986410244444210221134543331034245787
Q gi|254780865|r 391 GLYPHLPRTCWMMIVGTLALTGFGIPETSIGFSGFFSKDIILEVAYTSSHFTFVFFLLLFAAFLTSFYSWRLMFLTFFGK 470 (666)
Q Consensus 391 Gl~~~~P~~~~~~~i~~lsl~G~P~~~~~~p~~gf~sk~~il~~~~~~~~~~~~~~~~~~~~~lt~~Y~~r~~~~vF~G~ 470 (666)
T Consensus 336 Gl~~~~P~~~~~~~i~~la~~GiP------p~~gF~se~~i~~~~~~~~~--~~~~~~~l~~~lsa~Ysl~l~~~~~~G~ 407 (447)
T MTH00150 336 GMLNVYPMLSLWWFLFCIANMGAP------PFLNLLGEIMLFPSLYFYSP--WFLVILGLMVFLSGLYNLYLYTSIQHGS 407 (447)
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCC------CCCHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 984420899999999999975143------10509999999999999979--9999999999999999999999975798
Q ss_pred CCCC
Q ss_conf 4433
Q gi|254780865|r 471 MRVD 474 (666)
Q Consensus 471 ~~~~ 474 (666)
T Consensus 408 ~~~~ 411 (447)
T MTH00150 408 VSSF 411 (447)
T ss_pred CCCC
T ss_conf 8423