HHsearch alignment for GI: 254780865 and conserved domain: MTH00163
>MTH00163 ND4 NADH dehydrogenase subunit 4; Provisional.
Probab=100.00 E-value=0 Score=535.31 Aligned_cols=356 Identities=19% Similarity=0.267 Sum_probs=318.2
Q ss_pred EEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 35778743378999999999999999997475306888661899999999999999986558999988888856889988
Q gi|254780865|r 77 IPWGLRIDTLSSVMFVVVNSISAVVHIYSIGYMHDDPHRPRFFSYLSFFTFAMLVLVSSDNLLQMFFGWEGVGLASYLLI 156 (666)
Q Consensus 77 ~~~~~~~D~ls~~~~~~~~~i~~~~~~ys~~y~~~~~~~~~f~~~l~l~~~~m~~~~~s~~l~~~~v~wE~~~l~sy~Li 156 (666)
T Consensus 48 ~s~~f~~D~lS~~li~Ls~~I~~l~~l~S~~~~~~~~~~~~f~~l~l~l~~~l~~~F~s~nl~~FyiffE~~lip~~~LI 127 (446)
T MTH00163 48 ISYFFGVDLLSFGLILLSLWICLLMILSSESVYKYNNYSNLFLFLVLLLLLFLFLTFSSMNLLLFYIFFESSLIPTLILI 127 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 74998207868999999999999999996688742640689999999999999999999689999999999999999999
Q ss_pred HHHCCCHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 76203445410363000221224789999999999996205989999875431000124555566666666532024553
Q gi|254780865|r 157 GFWSFKESAIKASMKAFVVNRIGDLGLILAISAIIYLFHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPH 236 (666)
Q Consensus 157 ~~~~~~~~~~~a~~k~~~~~~~g~~~~l~~i~~l~~~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (666)
T Consensus 128 ~~wG~~~er~~A~~y~~~yt~~~Sl~lL~~i~~l~~~~gs~~~~~~~~~------------------------------~ 177 (446)
T MTH00163 128 LGWGYQPERLQAGIYLLFYTLFASLPLLVGIFYLYNSLGSLSFYLLNSF------------------------------G 177 (446)
T ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH------------------------------H
T ss_conf 9838977889999999999999999999999999997272379999875------------------------------7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH-CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHH
Q ss_conf 1799999999999865433432343124000-02332210001345666677799996301357-813444456777778
Q gi|254780865|r 237 DSIAIICLLFFLGAMGKSAQLLLHVWLPDAM-EGPTPVSALIHAATMVTAGVFLVARMSPLFEL-SPFVLDCITVLGCIT 314 (666)
Q Consensus 237 ~~~~~~~~l~~~g~~~K~a~~P~h~WLp~A~-~aPtpvSAllhs~~mv~~Gvy~l~r~~~~~~~-~~~~~~~~~~~g~~t 314 (666)
T Consensus 178 ~~~~~~~~~~~laF~vK~p~fp~H~WLP~AhveAP~~gSmiL-AgvllKlG~YGliR~~~~~~~~~~~~~~~l~~l~l~~ 256 (446)
T MTH00163 178 FNSFLLYLSMILAFLVKMPMFLVHLWLPKAHVEAPVSGSMIL-AGVLLKLGGYGLLRVMPLFSSLGLKFSYIWISISLVG 256 (446)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 799999999999999964804463405065523881468999-9999988887789999870005789999999999999
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCC---CCCCHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 876300111024520244321000135334456553---11100346555310001222210123211100001101277
Q gi|254780865|r 315 AFFAATVGLVQHDIKRVIAYSTCSQLGYMFVALGCR---AYGASIFHLFTHAFFKALLFLGSGSVIHAVAGEQDMRRMGG 391 (666)
Q Consensus 315 ~~~g~~~al~q~d~Kr~lAySsis~~G~i~~~~g~~---~~~~a~~~~~~H~~~ka~LFl~aG~vi~~~~~~~~i~~~gG 391 (666)
T Consensus 257 ~~~~sl~al~Q~DlK~LiAYSSVsHMG~v~~gi~~~~~~g~~gal~~mi~Hgl~ss~LF~~~g~-~y~~~~sR~i~~~~G 335 (446)
T MTH00163 257 GVLVSLICLRQTDLKSLIAYSSVAHMGLVLGGLMTFSYWGLNGSLLMMIAHGLCSSGLFCLANI-VYERLGSRSLLINKG 335 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHCCCCHHHHCC
T ss_conf 9999999998763789999988999999999999825999999999999999999999999999-999707622998499
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 61546699999998864210110000000024432178888889864102444442102211345433310342457874
Q gi|254780865|r 392 LYPHLPRTCWMMIVGTLALTGFGIPETSIGFSGFFSKDIILEVAYTSSHFTFVFFLLLFAAFLTSFYSWRLMFLTFFGKM 471 (666)
Q Consensus 392 l~~~~P~~~~~~~i~~lsl~G~P~~~~~~p~~gf~sk~~il~~~~~~~~~~~~~~~~~~~~~lt~~Y~~r~~~~vF~G~~ 471 (666)
T Consensus 336 l~~~~P~l~~~~~l~~~~n~g~P------p~~~F~gE~~i~~s~~~~~--~~~~~~~~~~~~ls~~Ysl~ly~~~~hG~~ 407 (446)
T MTH00163 336 LLNFMPSMSLWWFLLSSSNMAAP------PSLNLLGEISLLNSILSWS--WLSMIMLMLLSFFSAAYSLYLYSYSQHGKY 407 (446)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCC------CCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 47662899999999999984478------7441999999999999996--999999999999999999999999656997
Q ss_pred C
Q ss_conf 4
Q gi|254780865|r 472 R 472 (666)
Q Consensus 472 ~ 472 (666)
T Consensus 408 ~ 408 (446)
T MTH00163 408 Y 408 (446)
T ss_pred H
T ss_conf 5