HHsearch alignment for GI: 254780865 and conserved domain: MTH00200
>MTH00200 ND2 NADH dehydrogenase subunit 2; Provisional.
Probab=100.00 E-value=0 Score=401.19 Aligned_cols=308 Identities=19% Similarity=0.303 Sum_probs=256.4
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 1899-999999999999986558999988888856889988762034454103630002212247899999999999962
Q gi|254780865|r 117 RFFS-YLSFFTFAMLVLVSSDNLLQMFFGWEGVGLASYLLIGFWSFKESAIKASMKAFVVNRIGDLGLILAISAIIYLFH 195 (666)
Q Consensus 117 ~f~~-~l~l~~~~m~~~~~s~~l~~~~v~wE~~~l~sy~Li~~~~~~~~~~~a~~k~~~~~~~g~~~~l~~i~~l~~~~g 195 (666)
T Consensus 4 ~~~~il~l~~~~g~~~~~~s~~l~~l~v~lEl~sl~~~~Li~~-~~~~~s~eaa~KYfi~~~~~S~l~L~g~~~~~~~~g 82 (343)
T MTH00200 4 YISPLLILSMVLGTLLILSSSHWFFIWLGLEINTLAFIPLLAW-QHHPRAVEATVKYFIIQAVASALLLFGGLLNAWSSG 82 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7999999999999999999989999999999999999999984-998579999999999999999999999999999985
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCC
Q ss_conf 05989999875431000124555566666666532024553179999999999986543343234312400002332210
Q gi|254780865|r 196 SVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSIAIICLLFFLGAMGKSAQLLLHVWLPDAMEGPTPVSA 275 (666)
Q Consensus 196 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~K~a~~P~h~WLp~A~~aPtpvSA 275 (666)
T Consensus 83 ~~~~~~~~~~-----------------------------------l~~~lil~gl~~K~g~fPfH~Wlpdvy~~~~~~~~ 127 (343)
T MTH00200 83 EWGISELLGP-----------------------------------LSETLILLAIALKLGLAPGHFWVPDVLQGLNLITG 127 (343)
T ss_pred CHHHHHHHHH-----------------------------------HHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHH
T ss_conf 5336789889-----------------------------------99999999999997400248787317436988999
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCH
Q ss_conf 00134566667779999630135781344445677777887630011102452024432100013533445655311100
Q gi|254780865|r 276 LIHAATMVTAGVFLVARMSPLFELSPFVLDCITVLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVALGCRAYGAS 355 (666)
Q Consensus 276 llhs~~mv~~Gvy~l~r~~~~~~~~~~~~~~~~~~g~~t~~~g~~~al~q~d~Kr~lAySsis~~G~i~~~~g~~~~~~a 355 (666)
T Consensus 128 ~lls~~~Ki~~~~~l~~~~~~-----~~~~~l~~l~~lS~i~G~l~al~Q~~iKrllAYSSI~~~G~il~~l~~~~~-~~ 201 (343)
T MTH00200 128 LILSTWQKLAPLALLTQLASE-----LNSNILLLLGVLSALVGGWGGLNQTQLRKLLAFSSIAHLGWLLSGIVYGGL-LG 201 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----CCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH-HH
T ss_conf 999999999999999998732-----015899999999999999999852020257865379889999999998189-99
Q ss_pred HHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 34655531000122221012321110000110127761546699999998864210110000000024432178888889
Q gi|254780865|r 356 IFHLFTHAFFKALLFLGSGSVIHAVAGEQDMRRMGGLYPHLPRTCWMMIVGTLALTGFGIPETSIGFSGFFSKDIILEVA 435 (666)
Q Consensus 356 ~~~~~~H~~~ka~LFl~aG~vi~~~~~~~~i~~~gGl~~~~P~~~~~~~i~~lsl~G~P~~~~~~p~~gf~sk~~il~~~ 435 (666)
T Consensus 202 ~~~~~~y~~~~~~l~~~~~-----~~~~~~i~~l~gl~~~~p~~a~~~~i~~LSL~GiP------P~~GF~~K~~i~~~~ 270 (343)
T MTH00200 202 LLYFLLYVILTLSLFLLLH-----TLNSTKINSLSFSLGKSPLLSMLLLLTLLSLGGLP------PFTGFFLKWLILQEL 270 (343)
T ss_pred HHHHHHHHHHHHHHHHHHH-----HHCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHCH------HHHHHHHHHHHHHHH
T ss_conf 9999999999999999999-----96687198771721012999999999999984022------453599999999999
Q ss_pred HHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCH
Q ss_conf 8641024444421022113454333103424578744332100
Q gi|254780865|r 436 YTSSHFTFVFFLLLFAAFLTSFYSWRLMFLTFFGKMRVDKDIS 478 (666)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~lt~~Y~~r~~~~vF~G~~~~~~~~~ 478 (666)
T Consensus 271 ~~~~~~-~l~~i~li~S~is~~yYlRi~~~~~~~~~~~~~~~~ 312 (343)
T MTH00200 271 GKQNLV-IVATLLLLGSLLSLFYYLRLSYVSLLTLSPQQIMSS 312 (343)
T ss_pred HHCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 982739-999999999999999999999999980899996546