HHsearch alignment for GI: 254780865 and conserved domain: MTH00204
>MTH00204 ND4 NADH dehydrogenase subunit 4; Provisional.
Probab=100.00 E-value=0 Score=690.90 Aligned_cols=464 Identities=20% Similarity=0.281 Sum_probs=409.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEECCCCCEEEE--
Q ss_conf 079899999999999999730124214789999999999999999999997258985289997531013088223577--
Q gi|254780865|r 3 MIYEVIVFLPLIGAVFSGFFGRLMGKQFADIFTSLLMVIGAFLSWYVFYEIGFGHDVQVVKREIFPWIIFDGLDIPWG-- 80 (666)
Q Consensus 3 ~l~~l~~~~Pl~~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wi~~~~~~~~~~-- 80 (666)
T Consensus 1 ~~Lslii~~Pl~~a~~~~~~~~~-~~~~~r~ial~~sl~~l~lsl~l~~~fd~~~--~~q~~~~~~Wi~~~~~~~~~~~~ 77 (486)
T MTH00204 1 NGLSLIFLLLFMGIINVMGVPRE-NSVKLKKRALEWSLAILFSTLVLWGAFDGEG--QFQFINLVEWIISPALNLQWGPI 77 (486)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--CEEEEEEECCCCCCCCCEEECCH
T ss_conf 95399999999999999977886-1789999999999999999999999818888--54899976323467854231331
Q ss_pred -EEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf -8743378999999999999999997475306888661899999999999999986558999988888856889988762
Q gi|254780865|r 81 -LRIDTLSSVMFVVVNSISAVVHIYSIGYMHDDPHRPRFFSYLSFFTFAMLVLVSSDNLLQMFFGWEGVGLASYLLIGFW 159 (666)
Q Consensus 81 -~~~D~ls~~~~~~~~~i~~~~~~ys~~y~~~~~~~~~f~~~l~l~~~~m~~~~~s~~l~~~~v~wE~~~l~sy~Li~~~ 159 (666)
T Consensus 78 ~lgvDglsl~l~lLt~~l~~i~~l~s~~~~~~--~~~~f~~~ll~l~~~~lg~f~s~dl~~fyvf~E~~lip~y~LIg~w 155 (486)
T MTH00204 78 VFAVDGVSLFFLLLTTLLIPICILISWKSIKF--LFKEFLLCLLFLEVLLIGVFLVLDLLLFYILFEGILIPMFLLIGVW 155 (486)
T ss_pred HEEECHHHHHHHHHHHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 12046376999999999999999987474024--2889999999999999999998179999999999999999998882
Q ss_pred CCCHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf 03445410363000221224789999999999996205989999875431000124555566666666532024553179
Q gi|254780865|r 160 SFKESAIKASMKAFVVNRIGDLGLILAISAIIYLFHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSI 239 (666)
Q Consensus 160 ~~~~~~~~a~~k~~~~~~~g~~~~l~~i~~l~~~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (666)
T Consensus 156 G~~~~r~~Aa~k~~lyt~~gs~~~L~gi~~ly~~~gs~~~~~l~~~~---------------------------~~~~~~ 208 (486)
T MTH00204 156 GSREEKVRASYYFFFYTFAGSVFMLLGIFQLYQITGTTDYQILLNIK---------------------------LPLSTQ 208 (486)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH---------------------------CCCHHH
T ss_conf 99789999999999999998999999999999982843799999720---------------------------331479
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHH-CCCCCCCCCHHHHHHHHHHHHHHHHHH-CCC-CCCHHHHHHHHHHHHHHHH
Q ss_conf 9999999999865433432343124000-023322100013456666777999963-013-5781344445677777887
Q gi|254780865|r 240 AIICLLFFLGAMGKSAQLLLHVWLPDAM-EGPTPVSALIHAATMVTAGVFLVARMS-PLF-ELSPFVLDCITVLGCITAF 316 (666)
Q Consensus 240 ~~~~~l~~~g~~~K~a~~P~h~WLp~A~-~aPtpvSAllhs~~mv~~Gvy~l~r~~-~~~-~~~~~~~~~~~~~g~~t~~ 316 (666)
T Consensus 209 ~~~~~~~~l~f~vK~~~~P~H~WLPda~~~APt~~S~ll-ag~l~K~g~ygllR~~~~~~p~~~~~~~~~i~~l~~is~i 287 (486)
T MTH00204 209 KWALVGFFLSLAVKIPQIPFHIWLPQAHVEAPVAGSVIL-AGILLKLGGYGFLRFSWPLFPAASEYFAPVIVMLSVIAVI 287 (486)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHH-HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999986251463762553788992277888-8999998788679888774431068888999998999999
Q ss_pred HHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCC---CCCCHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 6300111024520244321000135334456553---1110034655531000122221012321110000110127761
Q gi|254780865|r 317 FAATVGLVQHDIKRVIAYSTCSQLGYMFVALGCR---AYGASIFHLFTHAFFKALLFLGSGSVIHAVAGEQDMRRMGGLY 393 (666)
Q Consensus 317 ~g~~~al~q~d~Kr~lAySsis~~G~i~~~~g~~---~~~~a~~~~~~H~~~ka~LFl~aG~vi~~~~~~~~i~~~gGl~ 393 (666)
T Consensus 288 ~g~l~Al~Q~dlKrllAYSSIshmG~i~lgl~~~~~~g~~ga~~~mi~Hg~~~~~LF~~~g~i-~~~~~t~~i~~~gGL~ 366 (486)
T MTH00204 288 YGSLMTCRQVDFKRLIAYSSVAHMGLVPLGLFTHTIEGLVAAVFLMLAHGFVSSALFIAVTFL-YERHHTRLIKYYRGVT 366 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCEEHHHHCCHH
T ss_conf 999999998888999999669999999999996674789999999999999999999999999-8604858799968934
Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 54669999999886421011000000002443217888888986410244444210221134543331034245787443
Q gi|254780865|r 394 PHLPRTCWMMIVGTLALTGFGIPETSIGFSGFFSKDIILEVAYTSSHFTFVFFLLLFAAFLTSFYSWRLMFLTFFGKMRV 473 (666)
Q Consensus 394 ~~~P~~~~~~~i~~lsl~G~P~~~~~~p~~gf~sk~~il~~~~~~~~~~~~~~~~~~~~~lt~~Y~~r~~~~vF~G~~~~ 473 (666)
T Consensus 367 ~~~P~~a~~~~i~~la~~GlP------~~~gF~ge~~i~~g~~~~~--~~~~~~~~~~~vlsa~Y~l~~~~~~~~g~~~~ 438 (486)
T MTH00204 367 LTMPLFVIIMLVLSLANMGIP------LSCNFVGEFFSLLAAFEYN--YGLGVLVTSGMVWSAAYSLYLYNRISFGGGSN 438 (486)
T ss_pred HHCCHHHHHHHHHHHHHCCCC------CCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 448799999999999981897------6475889999999999985--99999999999999999999999987599985
Q ss_pred CCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 32100000013553332024565666321000001246
Q gi|254780865|r 474 DKDISHKIHESPLVMQIPLFILAIGSIFFGFIFHDVFF 511 (666)
Q Consensus 474 ~~~~~~~~~e~~~~m~~pl~vLa~~si~~G~~~~~~~~ 511 (666)
T Consensus 439 ---~~~~~~d~~~~e~~~~~~L~~~~i~~Gi~P~~il~ 473 (486)
T MTH00204 439 ---YLLFNRDLNRRELLAILPLLIAIFLGGIVPFPIID 473 (486)
T ss_pred ---CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHH
T ss_conf ---44467999987999999999999999973198998