HHsearch alignment for GI: 254780865 and conserved domain: MTH00217

>MTH00217 ND4 NADH dehydrogenase subunit 4; Provisional.
Probab=100.00  E-value=0  Score=674.17  Aligned_cols=464  Identities=19%  Similarity=0.235  Sum_probs=395.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEECCCCCEE-EEEE
Q ss_conf             798999999999999997301242147899999999999999999999972589852899975310130882235-7787
Q gi|254780865|r    4 IYEVIVFLPLIGAVFSGFFGRLMGKQFADIFTSLLMVIGAFLSWYVFYEIGFGHDVQVVKREIFPWIIFDGLDIP-WGLR   82 (666)
Q Consensus         4 l~~l~~~~Pl~~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wi~~~~~~~~-~~~~   82 (666)
T Consensus         1 ~L~~~i~lPllgal~l~~~p~~~~-~~~~~~~l~~sl~~l~~~l~l~~~f~~~~--~~q~~~~~~Wi~~~~~~~~~~~lg   77 (482)
T MTH00217          1 MLESIFILPLIGILALLIIPRDDI-MRLWKAGLEWSLLTLTGTILLWASFDGAG--QFQVVKRLDWIFGVEPGFGFVIFG   77 (482)
T ss_pred             CHHHHHHHHHHHHHHHHHCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHCCCCC--CEEEEEEECCCCCCCCCCCEEEEC
T ss_conf             958999999999999999398157-78999999999999999999999707888--647999864101358664500125


Q ss_pred             EEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             43378999999999999999997475306888661899999999999999986558999988888856889988762034
Q gi|254780865|r   83 IDTLSSVMFVVVNSISAVVHIYSIGYMHDDPHRPRFFSYLSFFTFAMLVLVSSDNLLQMFFGWEGVGLASYLLIGFWSFK  162 (666)
Q Consensus        83 ~D~ls~~~~~~~~~i~~~~~~ys~~y~~~~~~~~~f~~~l~l~~~~m~~~~~s~~l~~~~v~wE~~~l~sy~Li~~~~~~  162 (666)
T Consensus        78 vDgls~~lv~Lt~~l~~i~~l~s~~~~~~--~~~~f~~~~L~~~~~~lGvf~s~Dl~~fyvf~E~~lip~y~LI~~wg~~  155 (482)
T MTH00217         78 VDGISIFFIILTALLIPICVLISLKSIKF--LIKEFLLCLLFIEVLLMGVFTILDLVGFYILFEGILIPMFLIIGIWGSR  155 (482)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             64677999999999999999985374114--2789999999999999999998389999999999999999945364789


Q ss_pred             HHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf             45410363000221224789999999999996205989999875431000124555566666666532024553179999
Q gi|254780865|r  163 ESAIKASMKAFVVNRIGDLGLILAISAIIYLFHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSIAII  242 (666)
Q Consensus       163 ~~~~~a~~k~~~~~~~g~~~~l~~i~~l~~~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (666)
T Consensus       156 ~~~~~Aa~k~~l~t~~Gs~~~L~gi~~ly~~~Gt~~~~~l~~~~---------------------------~~~~~~~~~  208 (482)
T MTH00217        156 EEKIQASYYFFFYTFIGSVFMLLGIFTLYSNAGSTDYQALCCLK---------------------------IEKELQYFV  208 (482)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHC---------------------------CCHHHHHHH
T ss_conf             89999999999999899999999999999980874299999750---------------------------444689999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCHH-CCCCCCCCCHHHHHHHHHHHHHHHHHH-CCCCC-CHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999865433432343124000-023322100013456666777999963-01357-81344445677777887630
Q gi|254780865|r  243 CLLFFLGAMGKSAQLLLHVWLPDAM-EGPTPVSALIHAATMVTAGVFLVARMS-PLFEL-SPFVLDCITVLGCITAFFAA  319 (666)
Q Consensus       243 ~~l~~~g~~~K~a~~P~h~WLp~A~-~aPtpvSAllhs~~mv~~Gvy~l~r~~-~~~~~-~~~~~~~~~~~g~~t~~~g~  319 (666)
T Consensus       209 ~~~~~i~f~vK~~~~PfH~WLPda~~~APt~~S~ll-agvl~K~g~ygliR~~~~l~p~~~~~~~~~i~~l~~itii~ga  287 (482)
T MTH00217        209 FIGFFLSLAIKIPKIPFHIWLPQAHVEAPVAGSVVL-AGVLLKLGGYGFIRFSWPLLPDAAEYFGPLILTLSLFAIIYGS  287 (482)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH-HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999997052025035057223880688888-8988887566669999875500376641799998788899999


Q ss_pred             HHHHCCCCCHHHHHHHHHCCCCCCCCCCCCC---CCCCHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             0111024520244321000135334456553---1110034655531000122221012321110000110127761546
Q gi|254780865|r  320 TVGLVQHDIKRVIAYSTCSQLGYMFVALGCR---AYGASIFHLFTHAFFKALLFLGSGSVIHAVAGEQDMRRMGGLYPHL  396 (666)
Q Consensus       320 ~~al~q~d~Kr~lAySsis~~G~i~~~~g~~---~~~~a~~~~~~H~~~ka~LFl~aG~vi~~~~~~~~i~~~gGl~~~~  396 (666)
T Consensus       288 ~~Al~Q~diKrllAYSSIshmG~i~lgl~~~~~~g~~ga~~~~i~H~~~~~~LFl~~g~i-~~~~~t~~i~~~gGL~~~~  366 (482)
T MTH00217        288 LTTCRQVDLKRIIAYSSVAHMGLVTLGLFSHTIQGLVAAVFLMLAHGLVSSALFIAVTFL-YDRYHTRLIKYYRGMAITM  366 (482)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCEEHHHHCCHHHHC
T ss_conf             999883166699999899899999999997278999999999999999999999999999-9713853799958956659


Q ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf             69999999886421011000000002443217888888986410244444210221134543331034245787443321
Q gi|254780865|r  397 PRTCWMMIVGTLALTGFGIPETSIGFSGFFSKDIILEVAYTSSHFTFVFFLLLFAAFLTSFYSWRLMFLTFFGKMRVDKD  476 (666)
Q Consensus       397 P~~~~~~~i~~lsl~G~P~~~~~~p~~gf~sk~~il~~~~~~~~~~~~~~~~~~~~~lt~~Y~~r~~~~vF~G~~~~~~~  476 (666)
T Consensus       367 P~~~~~~~i~~ls~~GlP------~~~GF~ge~~i~~~~~~~~~--~~~~~a~~~~il~a~Y~l~~~~~v~~g~~~~~--  436 (482)
T MTH00217        367 PLFGMLLLILVLANASIP------LSCNFIGEFLSLLAAFEYSF--IAGVLASVGMVLSAGYSIYMYNRICFGAFSKY--  436 (482)
T ss_pred             CHHHHHHHHHHHHHHCCC------CCCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC--
T ss_conf             398999999999972578------64628999999999999859--99999999999999999999999983898865--


Q ss_pred             CHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             000000135533320245656663210000012467
Q gi|254780865|r  477 ISHKIHESPLVMQIPLFILAIGSIFFGFIFHDVFFG  512 (666)
Q Consensus       477 ~~~~~~e~~~~m~~pl~vLa~~si~~G~~~~~~~~~  512 (666)
T Consensus       437 -~~~~~d~~~~e~~~~~~L~~l~i~~Gl~P~~~ld~  471 (482)
T MTH00217        437 -LYFSRDLNRREFYSILPLVILIIIMGVFPFLVVDE  471 (482)
T ss_pred             -CCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_conf             -55779998659999999999999999642999976