HHsearch alignment for GI: 254780865 and conserved domain: MTH00217
>MTH00217 ND4 NADH dehydrogenase subunit 4; Provisional.
Probab=100.00 E-value=0 Score=674.17 Aligned_cols=464 Identities=19% Similarity=0.235 Sum_probs=395.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEECCCCCEE-EEEE
Q ss_conf 798999999999999997301242147899999999999999999999972589852899975310130882235-7787
Q gi|254780865|r 4 IYEVIVFLPLIGAVFSGFFGRLMGKQFADIFTSLLMVIGAFLSWYVFYEIGFGHDVQVVKREIFPWIIFDGLDIP-WGLR 82 (666)
Q Consensus 4 l~~l~~~~Pl~~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wi~~~~~~~~-~~~~ 82 (666)
T Consensus 1 ~L~~~i~lPllgal~l~~~p~~~~-~~~~~~~l~~sl~~l~~~l~l~~~f~~~~--~~q~~~~~~Wi~~~~~~~~~~~lg 77 (482)
T MTH00217 1 MLESIFILPLIGILALLIIPRDDI-MRLWKAGLEWSLLTLTGTILLWASFDGAG--QFQVVKRLDWIFGVEPGFGFVIFG 77 (482)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHCCCCC--CEEEEEEECCCCCCCCCCCEEEEC
T ss_conf 958999999999999999398157-78999999999999999999999707888--647999864101358664500125
Q ss_pred EEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 43378999999999999999997475306888661899999999999999986558999988888856889988762034
Q gi|254780865|r 83 IDTLSSVMFVVVNSISAVVHIYSIGYMHDDPHRPRFFSYLSFFTFAMLVLVSSDNLLQMFFGWEGVGLASYLLIGFWSFK 162 (666)
Q Consensus 83 ~D~ls~~~~~~~~~i~~~~~~ys~~y~~~~~~~~~f~~~l~l~~~~m~~~~~s~~l~~~~v~wE~~~l~sy~Li~~~~~~ 162 (666)
T Consensus 78 vDgls~~lv~Lt~~l~~i~~l~s~~~~~~--~~~~f~~~~L~~~~~~lGvf~s~Dl~~fyvf~E~~lip~y~LI~~wg~~ 155 (482)
T MTH00217 78 VDGISIFFIILTALLIPICVLISLKSIKF--LIKEFLLCLLFIEVLLMGVFTILDLVGFYILFEGILIPMFLIIGIWGSR 155 (482)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 64677999999999999999985374114--2789999999999999999998389999999999999999945364789
Q ss_pred HHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 45410363000221224789999999999996205989999875431000124555566666666532024553179999
Q gi|254780865|r 163 ESAIKASMKAFVVNRIGDLGLILAISAIIYLFHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSIAII 242 (666)
Q Consensus 163 ~~~~~a~~k~~~~~~~g~~~~l~~i~~l~~~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (666)
T Consensus 156 ~~~~~Aa~k~~l~t~~Gs~~~L~gi~~ly~~~Gt~~~~~l~~~~---------------------------~~~~~~~~~ 208 (482)
T MTH00217 156 EEKIQASYYFFFYTFIGSVFMLLGIFTLYSNAGSTDYQALCCLK---------------------------IEKELQYFV 208 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHC---------------------------CCHHHHHHH
T ss_conf 89999999999999899999999999999980874299999750---------------------------444689999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCHH-CCCCCCCCCHHHHHHHHHHHHHHHHHH-CCCCC-CHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999865433432343124000-023322100013456666777999963-01357-81344445677777887630
Q gi|254780865|r 243 CLLFFLGAMGKSAQLLLHVWLPDAM-EGPTPVSALIHAATMVTAGVFLVARMS-PLFEL-SPFVLDCITVLGCITAFFAA 319 (666)
Q Consensus 243 ~~l~~~g~~~K~a~~P~h~WLp~A~-~aPtpvSAllhs~~mv~~Gvy~l~r~~-~~~~~-~~~~~~~~~~~g~~t~~~g~ 319 (666)
T Consensus 209 ~~~~~i~f~vK~~~~PfH~WLPda~~~APt~~S~ll-agvl~K~g~ygliR~~~~l~p~~~~~~~~~i~~l~~itii~ga 287 (482)
T MTH00217 209 FIGFFLSLAIKIPKIPFHIWLPQAHVEAPVAGSVVL-AGVLLKLGGYGFIRFSWPLLPDAAEYFGPLILTLSLFAIIYGS 287 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH-HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999997052025035057223880688888-8988887566669999875500376641799998788899999
Q ss_pred HHHHCCCCCHHHHHHHHHCCCCCCCCCCCCC---CCCCHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 0111024520244321000135334456553---1110034655531000122221012321110000110127761546
Q gi|254780865|r 320 TVGLVQHDIKRVIAYSTCSQLGYMFVALGCR---AYGASIFHLFTHAFFKALLFLGSGSVIHAVAGEQDMRRMGGLYPHL 396 (666)
Q Consensus 320 ~~al~q~d~Kr~lAySsis~~G~i~~~~g~~---~~~~a~~~~~~H~~~ka~LFl~aG~vi~~~~~~~~i~~~gGl~~~~ 396 (666)
T Consensus 288 ~~Al~Q~diKrllAYSSIshmG~i~lgl~~~~~~g~~ga~~~~i~H~~~~~~LFl~~g~i-~~~~~t~~i~~~gGL~~~~ 366 (482)
T MTH00217 288 LTTCRQVDLKRIIAYSSVAHMGLVTLGLFSHTIQGLVAAVFLMLAHGLVSSALFIAVTFL-YDRYHTRLIKYYRGMAITM 366 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCEEHHHHCCHHHHC
T ss_conf 999883166699999899899999999997278999999999999999999999999999-9713853799958956659
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 69999999886421011000000002443217888888986410244444210221134543331034245787443321
Q gi|254780865|r 397 PRTCWMMIVGTLALTGFGIPETSIGFSGFFSKDIILEVAYTSSHFTFVFFLLLFAAFLTSFYSWRLMFLTFFGKMRVDKD 476 (666)
Q Consensus 397 P~~~~~~~i~~lsl~G~P~~~~~~p~~gf~sk~~il~~~~~~~~~~~~~~~~~~~~~lt~~Y~~r~~~~vF~G~~~~~~~ 476 (666)
T Consensus 367 P~~~~~~~i~~ls~~GlP------~~~GF~ge~~i~~~~~~~~~--~~~~~a~~~~il~a~Y~l~~~~~v~~g~~~~~-- 436 (482)
T MTH00217 367 PLFGMLLLILVLANASIP------LSCNFIGEFLSLLAAFEYSF--IAGVLASVGMVLSAGYSIYMYNRICFGAFSKY-- 436 (482)
T ss_pred CHHHHHHHHHHHHHHCCC------CCCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC--
T ss_conf 398999999999972578------64628999999999999859--99999999999999999999999983898865--
Q ss_pred CHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 000000135533320245656663210000012467
Q gi|254780865|r 477 ISHKIHESPLVMQIPLFILAIGSIFFGFIFHDVFFG 512 (666)
Q Consensus 477 ~~~~~~e~~~~m~~pl~vLa~~si~~G~~~~~~~~~ 512 (666)
T Consensus 437 -~~~~~d~~~~e~~~~~~L~~l~i~~Gl~P~~~ld~ 471 (482)
T MTH00217 437 -LYFSRDLNRREFYSILPLVILIIIMGVFPFLVVDE 471 (482)
T ss_pred -CCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_conf -55779998659999999999999999642999976