HHsearch alignment for GI: 254780865 and conserved domain: PRK05777
>PRK05777 NADH dehydrogenase subunit N; Provisional.
Probab=100.00 E-value=0 Score=622.15 Aligned_cols=456 Identities=19% Similarity=0.309 Sum_probs=372.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEECCCCCEEEE
Q ss_conf 92079899999999999999730124214789999999999999999999997258985289997531013088223577
Q gi|254780865|r 1 MAMIYEVIVFLPLIGAVFSGFFGRLMGKQFADIFTSLLMVIGAFLSWYVFYEIGFGHDVQVVKREIFPWIIFDGLDIPWG 80 (666)
Q Consensus 1 M~~l~~l~~~~Pl~~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wi~~~~~~~~~~ 80 (666)
T Consensus 6 ~~~~~llP~lill~~al~~ll~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~ 69 (478)
T PRK05777 6 LNLQLLLPELILLIGALALLLVDLFIGRRNRRL-TATLAVAGLVVALVSLLFVASGGTGV---------------AFNGM 69 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH-HHHHHHHHHHHHHHHHHHHCCCCCHH---------------HHCCE
T ss_conf 109999999999999999999999754033689-99999999999999999980787520---------------31201
Q ss_pred EEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 87433789999999999999999974753068886618999999999999999865589999888888568899887620
Q gi|254780865|r 81 LRIDTLSSVMFVVVNSISAVVHIYSIGYMHDDPHRPRFFSYLSFFTFAMLVLVSSDNLLQMFFGWEGVGLASYLLIGFWS 160 (666)
Q Consensus 81 ~~~D~ls~~~~~~~~~i~~~~~~ys~~y~~~~~~~~~f~~~l~l~~~~m~~~~~s~~l~~~~v~wE~~~l~sy~Li~~~~ 160 (666)
T Consensus 70 ~~vD~ls~~~~~l~~~~~~~~~l~s~~~~~~~~--~~f~~l~l~~~~g~~~~~~s~dl~~l~v~~El~sl~~y~Li~~~~ 147 (478)
T PRK05777 70 FVVDGFALFLKGLILLASALTLVLAREYLKDRN--GEFYLLVLFAVLGMMVMVSANDLLTLFLGLELLSLPLYALAALRR 147 (478)
T ss_pred EEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 477567899999999999999999999986677--659999999999999999983699999999999999998798727
Q ss_pred CCHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 34454103630002212247899999999999962059899998754310001245555666666665320245531799
Q gi|254780865|r 161 FKESAIKASMKAFVVNRIGDLGLILAISAIIYLFHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSIA 240 (666)
Q Consensus 161 ~~~~~~~a~~k~~~~~~~g~~~~l~~i~~l~~~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (666)
T Consensus 148 ~~~~s~eAa~ky~l~~~~~s~~lL~gi~~ly~~tGs~~~~~l~~~~~~~~-----------------------~~~~~~~ 204 (478)
T PRK05777 148 DRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSLSLAGIAKALADGM-----------------------LNSLLLL 204 (478)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCC-----------------------CCCHHHH
T ss_conf 98899999999999979999999999999998819974999999875366-----------------------5418999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHC-CCCCCCCCHHHHHHHHHHHHHHHHHHC-CC-CCCHHHHHHHHHHHHHHHHH
Q ss_conf 9999999998654334323431240000-233221000134566667779999630-13-57813444456777778876
Q gi|254780865|r 241 IICLLFFLGAMGKSAQLLLHVWLPDAME-GPTPVSALIHAATMVTAGVFLVARMSP-LF-ELSPFVLDCITVLGCITAFF 317 (666)
Q Consensus 241 ~~~~l~~~g~~~K~a~~P~h~WLp~A~~-aPtpvSAllhs~~mv~~Gvy~l~r~~~-~~-~~~~~~~~~~~~~g~~t~~~ 317 (666)
T Consensus 205 ~~~~l~l~g~~~K~a~~PfH~WlPday~~APt~vsa~ls~-~~k~a~~~~l~r~~~~~~~~~~~~~~~~l~~l~~~s~~~ 283 (478)
T PRK05777 205 FGLVFLLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLAT-APKIAAFAVLLRLFYVAFGPLSEDWQQVLAIIAILSMIV 283 (478)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999987273765614143635898168789888-999999999999999861544799999999999999999
Q ss_pred HHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCC---CCCCHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 300111024520244321000135334456553---11100346555310001222210123211100001101277615
Q gi|254780865|r 318 AATVGLVQHDIKRVIAYSTCSQLGYMFVALGCR---AYGASIFHLFTHAFFKALLFLGSGSVIHAVAGEQDMRRMGGLYP 394 (666)
Q Consensus 318 g~~~al~q~d~Kr~lAySsis~~G~i~~~~g~~---~~~~a~~~~~~H~~~ka~LFl~aG~vi~~~~~~~~i~~~gGl~~ 394 (666)
T Consensus 284 g~l~Al~Q~d~KRlLAYSsIs~~G~il~gi~~~~~~~~~~~~~~~~~h~~~~~~lF~~~~~l~~~~~~~~~i~~l~Gl~~ 363 (478)
T PRK05777 284 GNLAAISQTNIKRLLAYSSIAHMGFLLVGLAAGTVAGYSAAMFYLLAYLFMTLGAFGVILLLSRKGFEAESIDDFAGLNK 363 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCHHC
T ss_conf 99999988606478876798646399999997268899999999999999999999999999965797030998643232
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 46699999998864210110000000024432178888889864102444442102211345433310342457874433
Q gi|254780865|r 395 HLPRTCWMMIVGTLALTGFGIPETSIGFSGFFSKDIILEVAYTSSHFTFVFFLLLFAAFLTSFYSWRLMFLTFFGKMRVD 474 (666)
Q Consensus 395 ~~P~~~~~~~i~~lsl~G~P~~~~~~p~~gf~sk~~il~~~~~~~~~~~~~~~~~~~~~lt~~Y~~r~~~~vF~G~~~~~ 474 (666)
T Consensus 364 ~~P~~a~~~~i~~lsl~GiP------p~~GF~~K~~i~~~~~~~~~~-~l~~~~~~~s~is~~Yylri~~~~f~~~~~~~ 436 (478)
T PRK05777 364 RSPVLAAVMTIFMLSLAGIP------PTAGFWGKFYVFEAAVEAGLW-WLAVIGVLNSAIGAFYYLRVIKVMYFDEPEGE 436 (478)
T ss_pred CCHHHHHHHHHHHHHHHCCC------CCCHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 49389999999999980885------213088999999999974849-99999999999999999999999932899854
Q ss_pred CCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 210000001355333202456566632100000124
Q gi|254780865|r 475 KDISHKIHESPLVMQIPLFILAIGSIFFGFIFHDVF 510 (666)
Q Consensus 475 ~~~~~~~~e~~~~m~~pl~vLa~~si~~G~~~~~~~ 510 (666)
T Consensus 437 -----~~~~~~~~~~~~~~i~a~~~i~~Gi~P~~ll 467 (478)
T PRK05777 437 -----PRDAPSNLRLVVLSVSALLVLVLGILPQPLL 467 (478)
T ss_pred -----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf -----4678871589999999999999995379999