HHsearch alignment for GI: 254780865 and conserved domain: PRK05846
>PRK05846 NADH dehydrogenase subunit M; Reviewed.
Probab=100.00 E-value=0 Score=682.67 Aligned_cols=462 Identities=24% Similarity=0.402 Sum_probs=398.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEECCCCCEEEEEE
Q ss_conf 07989999999999999973012421478999999999999999999999725898528999753101308822357787
Q gi|254780865|r 3 MIYEVIVFLPLIGAVFSGFFGRLMGKQFADIFTSLLMVIGAFLSWYVFYEIGFGHDVQVVKREIFPWIIFDGLDIPWGLR 82 (666)
Q Consensus 3 ~l~~l~~~~Pl~~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wi~~~~~~~~~~~~ 82 (666)
T Consensus 4 plL~llVl~Pllgall~~l~~~~-~~~~~~~~a~~~~~~~~~~~i~l~~~~~~~~~~~~-~~~~~~w~~--~~gi~~~l~ 79 (495)
T PRK05846 4 PLLSILIFLPLIGGLLILLTERA-ARRLARWIALITTLLTLALSLVLWIGFDPSNPGFQ-FVEKVPWIP--RFGISYHLG 79 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEE-EEEEECCCC--CCCCEEEEE
T ss_conf 69999999999999999997253-27899999999999999999999999747888648-998644566--668068985
Q ss_pred EEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 43378999999999999999997475306888661899999999999999986558999988888856889988762034
Q gi|254780865|r 83 IDTLSSVMFVVVNSISAVVHIYSIGYMHDDPHRPRFFSYLSFFTFAMLVLVSSDNLLQMFFGWEGVGLASYLLIGFWSFK 162 (666)
Q Consensus 83 ~D~ls~~~~~~~~~i~~~~~~ys~~y~~~~~~~~~f~~~l~l~~~~m~~~~~s~~l~~~~v~wE~~~l~sy~Li~~~~~~ 162 (666)
T Consensus 80 ~D~ls~~~~~l~~~v~~~~~l~s~~~~~~--~~~~f~~~~ll~~~~m~g~~~a~dl~~~fvf~El~~i~sy~Li~~~~-~ 156 (495)
T PRK05846 80 VDGISLLLVVLTALLTPLAVLASWEEIKK--RVKFYMAALLILEGGVIGVFAALDLLLFYVFFEAMLIPMYFLIGVWG-G 156 (495)
T ss_pred ECHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCC-C
T ss_conf 10878999999999999999998663146--30189999999999999999976299999999999999999999759-7
Q ss_pred HHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHH-----HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
Q ss_conf 45410363000221224789999999999996-----2059899998754310001245555666666665320245531
Q gi|254780865|r 163 ESAIKASMKAFVVNRIGDLGLILAISAIIYLF-----HSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHD 237 (666)
Q Consensus 163 ~~~~~a~~k~~~~~~~g~~~~l~~i~~l~~~~-----gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (666)
T Consensus 157 ~~~~~Aa~ky~i~~~~gs~~~L~gi~~l~~~~~~~~~gs~~~~~l~~~---------------------------~~~~~ 209 (495)
T PRK05846 157 KNRIYAATKFFLYTLLGSLLMLVAIIYLVVVYYNAGVGTFDIADLLNT---------------------------PLPAG 209 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHC---------------------------CCCHH
T ss_conf 799999999999999999999999999999996345401389999855---------------------------57725
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHH-CCCCCCCCCHHHHHHHHHHHHHHHHHH-CCCC-CCHHHHHHHHHHHHHH
Q ss_conf 799999999999865433432343124000-023322100013456666777999963-0135-7813444456777778
Q gi|254780865|r 238 SIAIICLLFFLGAMGKSAQLLLHVWLPDAM-EGPTPVSALIHAATMVTAGVFLVARMS-PLFE-LSPFVLDCITVLGCIT 314 (666)
Q Consensus 238 ~~~~~~~l~~~g~~~K~a~~P~h~WLp~A~-~aPtpvSAllhs~~mv~~Gvy~l~r~~-~~~~-~~~~~~~~~~~~g~~t 314 (666)
T Consensus 210 ~~~~~~~~~~~g~~~K~a~~PfH~WlPday~~ap~~vsall-s~~~~k~g~y~l~R~~~~~f~~~~~~~~~~l~~lg~~t 288 (495)
T PRK05846 210 VQYLLFLAFFIAFAVKMPMFPLHTWLPDAHVEAPTAGSVLL-AGILLKMGAYGLLRFSLPLFPDASHEFAPIIITLGVIA 288 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCHHHHHH-HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 89999999999999986224233224676678995377778-89999999998899761135301599999999999888
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCC---CCCCHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 876300111024520244321000135334456553---11100346555310001222210123211100001101277
Q gi|254780865|r 315 AFFAATVGLVQHDIKRVIAYSTCSQLGYMFVALGCR---AYGASIFHLFTHAFFKALLFLGSGSVIHAVAGEQDMRRMGG 391 (666)
Q Consensus 315 ~~~g~~~al~q~d~Kr~lAySsis~~G~i~~~~g~~---~~~~a~~~~~~H~~~ka~LFl~aG~vi~~~~~~~~i~~~gG 391 (666)
T Consensus 289 ~~~g~~~Al~Q~d~KrllAYSsisq~G~il~g~~~~~~~~~~~a~~~~~~h~~~k~~lF~~~g~i~~-~~g~~~i~~l~G 367 (495)
T PRK05846 289 IIYGALVALAQTDIKKLIAYSSISHMGFVTLGIFAGNQLGVQGAIFQMISHGLSSAALFLLVGVLYD-RLHTRDIADYGG 367 (495)
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCCHHHCCC
T ss_conf 9989999999832004789989999999999998676999999999999999999999999999999-649817352378
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 61546699999998864210110000000024432178888889864102444442102211345433310342457874
Q gi|254780865|r 392 LYPHLPRTCWMMIVGTLALTGFGIPETSIGFSGFFSKDIILEVAYTSSHFTFVFFLLLFAAFLTSFYSWRLMFLTFFGKM 471 (666)
Q Consensus 392 l~~~~P~~~~~~~i~~lsl~G~P~~~~~~p~~gf~sk~~il~~~~~~~~~~~~~~~~~~~~~lt~~Y~~r~~~~vF~G~~ 471 (666)
T Consensus 368 l~~~~P~~~~~~~i~~lsl~GiP------p~~GF~~k~~i~~~~~~~~--~~~~~~~~~~~~l~~~y~l~~~~~~~~g~~ 439 (495)
T PRK05846 368 LAKVMPVLAAFFLFFAMASLGLP------GTSGFVGEFLILLGSFQVN--PWIAFIATTGLILAAVYSLWLYKRVMFGPV 439 (495)
T ss_pred CHHHCCHHHHHHHHHHHHHHCCC------CCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 46549688999899999982675------3051889999999999874--999999999999999999999999981898
Q ss_pred CCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 433210000001355333202456566632100000124
Q gi|254780865|r 472 RVDKDISHKIHESPLVMQIPLFILAIGSIFFGFIFHDVF 510 (666)
Q Consensus 472 ~~~~~~~~~~~e~~~~m~~pl~vLa~~si~~G~~~~~~~ 510 (666)
T Consensus 440 ~~~--~~~~~~~~~~~~~~~~~~l~~~~i~~Gi~P~~~~ 476 (495)
T PRK05846 440 AKE--EEAELKDLNGRELLILLPLVALLILLGVYPKPLL 476 (495)
T ss_pred CCC--CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 952--2447789998799999999999999997079999