HHsearch alignment for GI: 254780865 and conserved domain: PRK06458
>PRK06458 hydrogenase 4 subunit F; Validated.
Probab=100.00 E-value=0 Score=664.87 Aligned_cols=460 Identities=22% Similarity=0.382 Sum_probs=388.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEECCCCCEEEE
Q ss_conf 92079899999999999999730124214789999999999999999999997258985289997531013088223577
Q gi|254780865|r 1 MAMIYEVIVFLPLIGAVFSGFFGRLMGKQFADIFTSLLMVIGAFLSWYVFYEIGFGHDVQVVKREIFPWIIFDGLDIPWG 80 (666)
Q Consensus 1 M~~l~~l~~~~Pl~~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wi~~~~~~~~~~ 80 (666)
T Consensus 3 ~~~ll~llvliPli~all~~l~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---------------~~~~ 64 (491)
T PRK06458 3 YSILLALLLLIPLLASLLLFACRKR---RLAARLNVLGITLTLILALWLVQTVVDAGEIFA---------------AGLW 64 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE---------------CCEE
T ss_conf 6699999999999999999993785---289999999999999999999999825786000---------------2403
Q ss_pred EEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 874337899999999999999999747530688--------866189999999999999998655899998888885688
Q gi|254780865|r 81 LRIDTLSSVMFVVVNSISAVVHIYSIGYMHDDP--------HRPRFFSYLSFFTFAMLVLVSSDNLLQMFFGWEGVGLAS 152 (666)
Q Consensus 81 ~~~D~ls~~~~~~~~~i~~~~~~ys~~y~~~~~--------~~~~f~~~l~l~~~~m~~~~~s~~l~~~~v~wE~~~l~s 152 (666)
T Consensus 65 ~~~D~ls~~~~~l~~~i~~~~~lys~~y~~~~~~~~~~~~~~~~~y~~l~ll~~~g~~g~~~s~dl~~~~vf~El~~i~s 144 (491)
T PRK06458 65 FHVDDLNVLFLALTGFVGFLTSLYSIGYMRHEVEHGELSPVRLRLYYGMYQLFLFTMLLALTSNNLGLMWVAIEATTLSS 144 (491)
T ss_pred EEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 44517679999999999999999988998640310333421476999999999999999999818999999999999999
Q ss_pred HHHHHHHCCCHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99887620344541036300022122478999999999999620598999987543100012455556666666653202
Q gi|254780865|r 153 YLLIGFWSFKESAIKASMKAFVVNRIGDLGLILAISAIIYLFHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGID 232 (666)
Q Consensus 153 y~Li~~~~~~~~~~~a~~k~~~~~~~g~~~~l~~i~~l~~~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (666)
T Consensus 145 y~Li~~~~-~~~~~~Aa~ky~i~~~~gs~~~L~gi~~ly~~~gtl~~~~~~~~~~~~-----------------~~~~~~ 206 (491)
T PRK06458 145 VLLVGIYR-TRASLEAAWKYFILCSVGIAFALFGTILVYAAAATVMGDGEDAMLWTV-----------------LLAVAS 206 (491)
T ss_pred HHHHHHCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHC
T ss_conf 99999679-689999999999999999999999999999999988620578888888-----------------987632
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH-CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC---HHHHHHHH
Q ss_conf 45531799999999999865433432343124000-023322100013456666777999963013578---13444456
Q gi|254780865|r 233 VHPHDSIAIICLLFFLGAMGKSAQLLLHVWLPDAM-EGPTPVSALIHAATMVTAGVFLVARMSPLFELS---PFVLDCIT 308 (666)
Q Consensus 233 ~~~~~~~~~~~~l~~~g~~~K~a~~P~h~WLp~A~-~aPtpvSAllhs~~mv~~Gvy~l~r~~~~~~~~---~~~~~~~~ 308 (666)
T Consensus 207 ~~~~~~~~l~~~l~l~g~~~K~a~~PfH~WlPday~~aPt~vSall-s~v~~k~g~y~llr~~~~~~~~~~~~~~~~~l~ 285 (491)
T PRK06458 207 LLDPTLMSLAFVFLLIGFGTKVGLFPMHAWLPDAHSEAPSPVSAVL-SGVLLNVALYALLRYYIIIDAAIGSDFPGRLLL 285 (491)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHH-HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 2453799999999999999885625266885057560884389999-999999999999999998612025799999999
Q ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCC---CCCCHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCC
Q ss_conf 777778876300111024520244321000135334456553---11100346555310001222210123211100001
Q gi|254780865|r 309 VLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVALGCR---AYGASIFHLFTHAFFKALLFLGSGSVIHAVAGEQD 385 (666)
Q Consensus 309 ~~g~~t~~~g~~~al~q~d~Kr~lAySsis~~G~i~~~~g~~---~~~~a~~~~~~H~~~ka~LFl~aG~vi~~~~~~~~ 385 (666)
T Consensus 286 ~lg~lsii~g~l~Al~Q~dlKrlLAYSsIsq~G~i~~gi~~~~~~~~~~al~~~i~h~l~k~~LFl~~g~i~~-~~g~~~ 364 (491)
T PRK06458 286 IFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLITFAFGIGGPLGNFAALLHMLNHSLTKSAIFFASGNVLQ-KYGTQD 364 (491)
T ss_pred HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCEE
T ss_conf 9999999999999999837668999999999999999999588789999999999999999899999999999-859806
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 10127761546699999998864210110000000024432178888889864102444442102211345433310342
Q gi|254780865|r 386 MRRMGGLYPHLPRTCWMMIVGTLALTGFGIPETSIGFSGFFSKDIILEVAYTSSHFTFVFFLLLFAAFLTSFYSWRLMFL 465 (666)
Q Consensus 386 i~~~gGl~~~~P~~~~~~~i~~lsl~G~P~~~~~~p~~gf~sk~~il~~~~~~~~~~~~~~~~~~~~~lt~~Y~~r~~~~ 465 (666)
T Consensus 365 i~~l~Gl~~~~P~~~~~~~i~~lsl~GiP------p~~GF~~K~~i~~~~~~~~~~-~l~~~~~~~s~l~~~y~~~~~~~ 437 (491)
T PRK06458 365 INVIRGLLKVMPFTGWGLMLGVLAIAGMP------PFGVFISEFLILTAGLARGHP-WLAILLLLLLTLAFAALVRRVTG 437 (491)
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99871979883999999999999999887------997899999999999981879-99999999999999999999999
Q ss_pred CCCCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHH-CCCC
Q ss_conf 4578744332100000013553332024565666321000-0012
Q gi|254780865|r 466 TFFGKMRVDKDISHKIHESPLVMQIPLFILAIGSIFFGFI-FHDV 509 (666)
Q Consensus 466 vF~G~~~~~~~~~~~~~e~~~~m~~pl~vLa~~si~~G~~-~~~~ 509 (666)
T Consensus 438 ~~fg~~~~~----~~~~~~~~~~~~~~~il~~~~i~~Gl~~p~pl 478 (491)
T PRK06458 438 MVFGEPPQA----VNRGDLGWLTLLPMFIHLVLMLVLGLYLPPPL 478 (491)
T ss_pred HHCCCCCCC----CCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_conf 841899976----68899978799999999999999997274899