HHsearch alignment for GI: 254780865 and conserved domain: PRK06458

>PRK06458 hydrogenase 4 subunit F; Validated.
Probab=100.00  E-value=0  Score=664.87  Aligned_cols=460  Identities=22%  Similarity=0.382  Sum_probs=388.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEECCCCCEEEE
Q ss_conf             92079899999999999999730124214789999999999999999999997258985289997531013088223577
Q gi|254780865|r    1 MAMIYEVIVFLPLIGAVFSGFFGRLMGKQFADIFTSLLMVIGAFLSWYVFYEIGFGHDVQVVKREIFPWIIFDGLDIPWG   80 (666)
Q Consensus         1 M~~l~~l~~~~Pl~~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wi~~~~~~~~~~   80 (666)
T Consensus         3 ~~~ll~llvliPli~all~~l~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---------------~~~~   64 (491)
T PRK06458          3 YSILLALLLLIPLLASLLLFACRKR---RLAARLNVLGITLTLILALWLVQTVVDAGEIFA---------------AGLW   64 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE---------------CCEE
T ss_conf             6699999999999999999993785---289999999999999999999999825786000---------------2403


Q ss_pred             EEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             874337899999999999999999747530688--------866189999999999999998655899998888885688
Q gi|254780865|r   81 LRIDTLSSVMFVVVNSISAVVHIYSIGYMHDDP--------HRPRFFSYLSFFTFAMLVLVSSDNLLQMFFGWEGVGLAS  152 (666)
Q Consensus        81 ~~~D~ls~~~~~~~~~i~~~~~~ys~~y~~~~~--------~~~~f~~~l~l~~~~m~~~~~s~~l~~~~v~wE~~~l~s  152 (666)
T Consensus        65 ~~~D~ls~~~~~l~~~i~~~~~lys~~y~~~~~~~~~~~~~~~~~y~~l~ll~~~g~~g~~~s~dl~~~~vf~El~~i~s  144 (491)
T PRK06458         65 FHVDDLNVLFLALTGFVGFLTSLYSIGYMRHEVEHGELSPVRLRLYYGMYQLFLFTMLLALTSNNLGLMWVAIEATTLSS  144 (491)
T ss_pred             EEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             44517679999999999999999988998640310333421476999999999999999999818999999999999999


Q ss_pred             HHHHHHHCCCHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             99887620344541036300022122478999999999999620598999987543100012455556666666653202
Q gi|254780865|r  153 YLLIGFWSFKESAIKASMKAFVVNRIGDLGLILAISAIIYLFHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGID  232 (666)
Q Consensus       153 y~Li~~~~~~~~~~~a~~k~~~~~~~g~~~~l~~i~~l~~~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (666)
T Consensus       145 y~Li~~~~-~~~~~~Aa~ky~i~~~~gs~~~L~gi~~ly~~~gtl~~~~~~~~~~~~-----------------~~~~~~  206 (491)
T PRK06458        145 VLLVGIYR-TRASLEAAWKYFILCSVGIAFALFGTILVYAAAATVMGDGEDAMLWTV-----------------LLAVAS  206 (491)
T ss_pred             HHHHHHCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHC
T ss_conf             99999679-689999999999999999999999999999999988620578888888-----------------987632


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH-CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC---HHHHHHHH
Q ss_conf             45531799999999999865433432343124000-023322100013456666777999963013578---13444456
Q gi|254780865|r  233 VHPHDSIAIICLLFFLGAMGKSAQLLLHVWLPDAM-EGPTPVSALIHAATMVTAGVFLVARMSPLFELS---PFVLDCIT  308 (666)
Q Consensus       233 ~~~~~~~~~~~~l~~~g~~~K~a~~P~h~WLp~A~-~aPtpvSAllhs~~mv~~Gvy~l~r~~~~~~~~---~~~~~~~~  308 (666)
T Consensus       207 ~~~~~~~~l~~~l~l~g~~~K~a~~PfH~WlPday~~aPt~vSall-s~v~~k~g~y~llr~~~~~~~~~~~~~~~~~l~  285 (491)
T PRK06458        207 LLDPTLMSLAFVFLLIGFGTKVGLFPMHAWLPDAHSEAPSPVSAVL-SGVLLNVALYALLRYYIIIDAAIGSDFPGRLLL  285 (491)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHH-HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf             2453799999999999999885625266885057560884389999-999999999999999998612025799999999


Q ss_pred             HHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCC---CCCCHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCC
Q ss_conf             777778876300111024520244321000135334456553---11100346555310001222210123211100001
Q gi|254780865|r  309 VLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVALGCR---AYGASIFHLFTHAFFKALLFLGSGSVIHAVAGEQD  385 (666)
Q Consensus       309 ~~g~~t~~~g~~~al~q~d~Kr~lAySsis~~G~i~~~~g~~---~~~~a~~~~~~H~~~ka~LFl~aG~vi~~~~~~~~  385 (666)
T Consensus       286 ~lg~lsii~g~l~Al~Q~dlKrlLAYSsIsq~G~i~~gi~~~~~~~~~~al~~~i~h~l~k~~LFl~~g~i~~-~~g~~~  364 (491)
T PRK06458        286 IFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLITFAFGIGGPLGNFAALLHMLNHSLTKSAIFFASGNVLQ-KYGTQD  364 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCEE
T ss_conf             9999999999999999837668999999999999999999588789999999999999999899999999999-859806


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf             10127761546699999998864210110000000024432178888889864102444442102211345433310342
Q gi|254780865|r  386 MRRMGGLYPHLPRTCWMMIVGTLALTGFGIPETSIGFSGFFSKDIILEVAYTSSHFTFVFFLLLFAAFLTSFYSWRLMFL  465 (666)
Q Consensus       386 i~~~gGl~~~~P~~~~~~~i~~lsl~G~P~~~~~~p~~gf~sk~~il~~~~~~~~~~~~~~~~~~~~~lt~~Y~~r~~~~  465 (666)
T Consensus       365 i~~l~Gl~~~~P~~~~~~~i~~lsl~GiP------p~~GF~~K~~i~~~~~~~~~~-~l~~~~~~~s~l~~~y~~~~~~~  437 (491)
T PRK06458        365 INVIRGLLKVMPFTGWGLMLGVLAIAGMP------PFGVFISEFLILTAGLARGHP-WLAILLLLLLTLAFAALVRRVTG  437 (491)
T ss_pred             HHHHCCHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99871979883999999999999999887------997899999999999981879-99999999999999999999999


Q ss_pred             CCCCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHH-CCCC
Q ss_conf             4578744332100000013553332024565666321000-0012
Q gi|254780865|r  466 TFFGKMRVDKDISHKIHESPLVMQIPLFILAIGSIFFGFI-FHDV  509 (666)
Q Consensus       466 vF~G~~~~~~~~~~~~~e~~~~m~~pl~vLa~~si~~G~~-~~~~  509 (666)
T Consensus       438 ~~fg~~~~~----~~~~~~~~~~~~~~~il~~~~i~~Gl~~p~pl  478 (491)
T PRK06458        438 MVFGEPPQA----VNRGDLGWLTLLPMFIHLVLMLVLGLYLPPPL  478 (491)
T ss_pred             HHCCCCCCC----CCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_conf             841899976----68899978799999999999999997274899