HHsearch alignment for GI: 254780865 and conserved domain: PRK06521

>PRK06521 hydrogenase 4 subunit B; Validated.
Probab=100.00  E-value=0  Score=851.41  Aligned_cols=613  Identities=24%  Similarity=0.340  Sum_probs=465.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEECCCCCEEEEEE
Q ss_conf             07989999999999999973012421478999999999999999999999725898528999753101308822357787
Q gi|254780865|r    3 MIYEVIVFLPLIGAVFSGFFGRLMGKQFADIFTSLLMVIGAFLSWYVFYEIGFGHDVQVVKREIFPWIIFDGLDIPWGLR   82 (666)
Q Consensus         3 ~l~~l~~~~Pl~~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wi~~~~~~~~~~~~   82 (666)
T Consensus         5 ~l~~~~i~~~l~~a~~~l~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~---~~~---~~p~~~~~~~   76 (670)
T PRK06521          5 QLLLWSLLLWLALALAGLLLLRR--TRLAIRLSGPTGLLGGLLGLASALTALFAGPTVAAV---LPL---GLPWLPFHLR   76 (670)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE---CCC---CCCCCCEEEE
T ss_conf             89999999999999999984478--167899999999999999999999886379762024---256---8998755889


Q ss_pred             EEHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             433789999999999999999974753068--886618999999999999999865589999888888568899887620
Q gi|254780865|r   83 IDTLSSVMFVVVNSISAVVHIYSIGYMHDD--PHRPRFFSYLSFFTFAMLVLVSSDNLLQMFFGWEGVGLASYLLIGFWS  160 (666)
Q Consensus        83 ~D~ls~~~~~~~~~i~~~~~~ys~~y~~~~--~~~~~f~~~l~l~~~~m~~~~~s~~l~~~~v~wE~~~l~sy~Li~~~~  160 (666)
T Consensus        77 lD~LSa~fllli~~v~~~~~lYs~~Y~~~~~~~~~~~~~~~~~lf~~~m~~vv~a~dl~~f~vfwElm~l~sy~LV~~~~  156 (670)
T PRK06521         77 LDSLSAFFLLVISLLGAAASLYSLGYGREYEGKGPGRMGFFYNLFLASMVLVLLADDAFSFLVAWEMMSLSSWFLVMANH  156 (670)
T ss_pred             ECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             87778999999999999999980587410678760289999999999999999995899999999999999999998408


Q ss_pred             CCHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf             34454103630002212247899999999999962059899998754310001245555666666665320245531799
Q gi|254780865|r  161 FKESAIKASMKAFVVNRIGDLGLILAISAIIYLFHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSIA  240 (666)
Q Consensus       161 ~~~~~~~a~~k~~~~~~~g~~~~l~~i~~l~~~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (666)
T Consensus       157 ~~~~~~~Aa~~y~i~~~~G~~~lL~g~~lly~~~Gs~~f~~~~~~~---------------------------~~~~~~~  209 (670)
T PRK06521        157 RDAENRRAGFLYLLMAHAGTLAILLAFGLLAGESGSYDFAAMRAAH---------------------------LSPFLAS  209 (670)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHC---------------------------CCHHHHH
T ss_conf             9899999999999999999999999999999994791099998505---------------------------5616899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCHH-CCCCCCCCCHHHHHHHHHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHHHHH
Q ss_conf             999999999865433432343124000-0233221000134566667779999630-13578-13444456777778876
Q gi|254780865|r  241 IICLLFFLGAMGKSAQLLLHVWLPDAM-EGPTPVSALIHAATMVTAGVFLVARMSP-LFELS-PFVLDCITVLGCITAFF  317 (666)
Q Consensus       241 ~~~~l~~~g~~~K~a~~P~h~WLp~A~-~aPtpvSAllhs~~mv~~Gvy~l~r~~~-~~~~~-~~~~~~~~~~g~~t~~~  317 (666)
T Consensus       210 ~~f~l~l~Gf~~Kagl~PfH~WLP~A~~~APtpVSALl-SgvmvK~GvygliR~~~~l~~~~~~~~~~~ll~lg~~t~v~  288 (670)
T PRK06521        210 LVFLLALFGFGAKAGLVPLHVWLPRAHPAAPSHVSALM-SGVMTKVAIYGILRVVFDLLGAPQWWWGVLVLALGAISAVL  288 (670)
T ss_pred             HHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCHHHHHHH-HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999873737550221577788980899999-88899999999999888704634889999999999999999


Q ss_pred             HHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCC--------------CCCCHHHHHHHHHCCHHHHHHHCCCCCCCCCCC
Q ss_conf             300111024520244321000135334456553--------------111003465553100012222101232111000
Q gi|254780865|r  318 AATVGLVQHDIKRVIAYSTCSQLGYMFVALGCR--------------AYGASIFHLFTHAFFKALLFLGSGSVIHAVAGE  383 (666)
Q Consensus       318 g~~~al~q~d~Kr~lAySsis~~G~i~~~~g~~--------------~~~~a~~~~~~H~~~ka~LFl~aG~vi~~~~~~  383 (666)
T Consensus       289 G~l~Al~Q~DiKRlLAYSSIsq~G~i~lglG~~~~~~~~g~~~l~~l~~~gal~H~~nHa~fK~lLFl~aG~v~~~-tgt  367 (670)
T PRK06521        289 GVLYALAETDLKRLLAYSTIENIGIIFVGLGLAMVFIAYGMPALAALALTAALYHLLNHALFKSLLFLGAGAVLHA-TGT  367 (670)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCC
T ss_conf             9999998845899999988999999999998523310012102137899999999999999999999999999999-686


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC---------CCCCCCHHHHHH
Q ss_conf             01101277615466999999988642101100000000244321788888898641024---------444421022113
Q gi|254780865|r  384 QDMRRMGGLYPHLPRTCWMMIVGTLALTGFGIPETSIGFSGFFSKDIILEVAYTSSHFT---------FVFFLLLFAAFL  454 (666)
Q Consensus       384 ~~i~~~gGl~~~~P~~~~~~~i~~lsl~G~P~~~~~~p~~gf~sk~~il~~~~~~~~~~---------~~~~~~~~~~~l  454 (666)
T Consensus       368 r~i~~mgGL~~~mP~t~~~flig~lai~GlP------P~~GF~Sk~li~q~~~~~~~~~~~~~~~~~~~~~~~lal~~al  441 (670)
T PRK06521        368 RDMEKLGGLIRRMPWTAWAFLIGCLAISALP------PLNGFVSEWLLFQSLLSSPGLPQWGLKLLVPLAAALLALTAAL  441 (670)
T ss_pred             CCHHHHCCHHHHHHHHHHHHHHHHHHHHHCC------CCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             5188958955434799999999999986366------4254999999999998456666158999999999999999999


Q ss_pred             HHHHHHHCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC--CCCCCCCCCCCCCCC-----
Q ss_conf             4543331034245787443321000000135533320245656663210000012467--642113455433575-----
Q gi|254780865|r  455 TSFYSWRLMFLTFFGKMRVDKDISHKIHESPLVMQIPLFILAIGSIFFGFIFHDVFFG--SAYSSFWKGALFASS-----  527 (666)
Q Consensus       455 t~~Y~~r~~~~vF~G~~~~~~~~~~~~~e~~~~m~~pl~vLa~~si~~G~~~~~~~~~--~~~~~~~~~~l~~~~-----  527 (666)
T Consensus       442 a~~~fvk~~g~~FlG~pR~~~--~~~~~e~p~~m~~~m~iLA~~cv~~Gl~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~  519 (670)
T PRK06521        442 AAMCFVKFYGITFLGRPRSPK--AEQAHEVPRWMRAAMLLLAALCVLLGLLPGWVAPLIAPVAQALVGGRLPAVTVASGL  519 (670)
T ss_pred             HHHHHHHHHHHHCCCCCCCCC--CCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf             999999999983037999876--557787974357999999999999995548779888899987314445410034420


Q ss_pred             CCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH-H-----------HHHH---HHCCHHHHHHHCCCCHHH
Q ss_conf             33320--12336889999999999999999999998704012-4-----------6656---411258999870578168
Q gi|254780865|r  528 SNNVL--ERYHEVPLWVEYSSFIAFFVGFFSAFLMYIICPSL-P-----------KFLS---EKCRFFYCFLQNAWYFDR  590 (666)
Q Consensus       528 ~~~~l--~~~~~~~l~~~~i~ll~~iiGi~la~lly~~~~~~-~-----------~~~~---~~~~~l~~~l~~~~y~d~  590 (666)
T Consensus       520 ~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~W~cG~~~~~~~~qyta~sF~~plr~~f~~~~~~~~  599 (670)
T PRK06521        520 LLVPVSSSRASYSPLLVLLFLLALALLPLLLIRRFYSGRRRRGPAWACGYPWENAMAQYSAEGFAQPIRRVFAPLFRLRR  599 (670)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             01464100104568999999999999999999996258753067634678987566664166577999999998764567


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999998755766534154999999999999885096288999999999999999999
Q gi|254780865|r  591 IYDCLLVRPIVRLATILWKRVDLSIDKYGPGGIVACVRYLSSYSSRLQTGYLDHYAFSMLIGISILVIVML  661 (666)
Q Consensus       591 lY~~~ivk~~~~ls~~l~~~~D~~i~d~~v~gi~~~v~~~s~~lr~lQtG~i~~Yi~~i~igl~llli~~l  661 (666)
T Consensus       600 ~~~~~~~~~~~~~~~~~~~~~d~-~~~~l~~p~~~~v~~~~~~~r~lQ~G~i~~Yl~yi~~~Lv~lL~v~~  669 (670)
T PRK06521        600 EDVTMPPPGFDAPARYRARVTDP-FWERLYLPLARLVQRLAARIQRLQSGTIRLYLLYVFATLVVLLLVVA  669 (670)
T ss_pred             HHHHCCCCCCCCCCEEEEECCCH-HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             66301334554200244323637-98897689999999999999875188589999999999999999996