HHsearch alignment for GI: 254780865 and conserved domain: PRK06521
>PRK06521 hydrogenase 4 subunit B; Validated.
Probab=100.00 E-value=0 Score=851.41 Aligned_cols=613 Identities=24% Similarity=0.340 Sum_probs=465.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEECCCCCEEEEEE
Q ss_conf 07989999999999999973012421478999999999999999999999725898528999753101308822357787
Q gi|254780865|r 3 MIYEVIVFLPLIGAVFSGFFGRLMGKQFADIFTSLLMVIGAFLSWYVFYEIGFGHDVQVVKREIFPWIIFDGLDIPWGLR 82 (666)
Q Consensus 3 ~l~~l~~~~Pl~~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wi~~~~~~~~~~~~ 82 (666)
T Consensus 5 ~l~~~~i~~~l~~a~~~l~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~---~~~---~~p~~~~~~~ 76 (670)
T PRK06521 5 QLLLWSLLLWLALALAGLLLLRR--TRLAIRLSGPTGLLGGLLGLASALTALFAGPTVAAV---LPL---GLPWLPFHLR 76 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE---CCC---CCCCCCEEEE
T ss_conf 89999999999999999984478--167899999999999999999999886379762024---256---8998755889
Q ss_pred EEHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 433789999999999999999974753068--886618999999999999999865589999888888568899887620
Q gi|254780865|r 83 IDTLSSVMFVVVNSISAVVHIYSIGYMHDD--PHRPRFFSYLSFFTFAMLVLVSSDNLLQMFFGWEGVGLASYLLIGFWS 160 (666)
Q Consensus 83 ~D~ls~~~~~~~~~i~~~~~~ys~~y~~~~--~~~~~f~~~l~l~~~~m~~~~~s~~l~~~~v~wE~~~l~sy~Li~~~~ 160 (666)
T Consensus 77 lD~LSa~fllli~~v~~~~~lYs~~Y~~~~~~~~~~~~~~~~~lf~~~m~~vv~a~dl~~f~vfwElm~l~sy~LV~~~~ 156 (670)
T PRK06521 77 LDSLSAFFLLVISLLGAAASLYSLGYGREYEGKGPGRMGFFYNLFLASMVLVLLADDAFSFLVAWEMMSLSSWFLVMANH 156 (670)
T ss_pred ECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 87778999999999999999980587410678760289999999999999999995899999999999999999998408
Q ss_pred CCHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 34454103630002212247899999999999962059899998754310001245555666666665320245531799
Q gi|254780865|r 161 FKESAIKASMKAFVVNRIGDLGLILAISAIIYLFHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSIA 240 (666)
Q Consensus 161 ~~~~~~~a~~k~~~~~~~g~~~~l~~i~~l~~~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (666)
T Consensus 157 ~~~~~~~Aa~~y~i~~~~G~~~lL~g~~lly~~~Gs~~f~~~~~~~---------------------------~~~~~~~ 209 (670)
T PRK06521 157 RDAENRRAGFLYLLMAHAGTLAILLAFGLLAGESGSYDFAAMRAAH---------------------------LSPFLAS 209 (670)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHC---------------------------CCHHHHH
T ss_conf 9899999999999999999999999999999994791099998505---------------------------5616899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHH-CCCCCCCCCHHHHHHHHHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHHHHH
Q ss_conf 999999999865433432343124000-0233221000134566667779999630-13578-13444456777778876
Q gi|254780865|r 241 IICLLFFLGAMGKSAQLLLHVWLPDAM-EGPTPVSALIHAATMVTAGVFLVARMSP-LFELS-PFVLDCITVLGCITAFF 317 (666)
Q Consensus 241 ~~~~l~~~g~~~K~a~~P~h~WLp~A~-~aPtpvSAllhs~~mv~~Gvy~l~r~~~-~~~~~-~~~~~~~~~~g~~t~~~ 317 (666)
T Consensus 210 ~~f~l~l~Gf~~Kagl~PfH~WLP~A~~~APtpVSALl-SgvmvK~GvygliR~~~~l~~~~~~~~~~~ll~lg~~t~v~ 288 (670)
T PRK06521 210 LVFLLALFGFGAKAGLVPLHVWLPRAHPAAPSHVSALM-SGVMTKVAIYGILRVVFDLLGAPQWWWGVLVLALGAISAVL 288 (670)
T ss_pred HHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCHHHHHHH-HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999873737550221577788980899999-88899999999999888704634889999999999999999
Q ss_pred HHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCC--------------CCCCHHHHHHHHHCCHHHHHHHCCCCCCCCCCC
Q ss_conf 300111024520244321000135334456553--------------111003465553100012222101232111000
Q gi|254780865|r 318 AATVGLVQHDIKRVIAYSTCSQLGYMFVALGCR--------------AYGASIFHLFTHAFFKALLFLGSGSVIHAVAGE 383 (666)
Q Consensus 318 g~~~al~q~d~Kr~lAySsis~~G~i~~~~g~~--------------~~~~a~~~~~~H~~~ka~LFl~aG~vi~~~~~~ 383 (666)
T Consensus 289 G~l~Al~Q~DiKRlLAYSSIsq~G~i~lglG~~~~~~~~g~~~l~~l~~~gal~H~~nHa~fK~lLFl~aG~v~~~-tgt 367 (670)
T PRK06521 289 GVLYALAETDLKRLLAYSTIENIGIIFVGLGLAMVFIAYGMPALAALALTAALYHLLNHALFKSLLFLGAGAVLHA-TGT 367 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCC
T ss_conf 9999998845899999988999999999998523310012102137899999999999999999999999999999-686
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC---------CCCCCCHHHHHH
Q ss_conf 01101277615466999999988642101100000000244321788888898641024---------444421022113
Q gi|254780865|r 384 QDMRRMGGLYPHLPRTCWMMIVGTLALTGFGIPETSIGFSGFFSKDIILEVAYTSSHFT---------FVFFLLLFAAFL 454 (666)
Q Consensus 384 ~~i~~~gGl~~~~P~~~~~~~i~~lsl~G~P~~~~~~p~~gf~sk~~il~~~~~~~~~~---------~~~~~~~~~~~l 454 (666)
T Consensus 368 r~i~~mgGL~~~mP~t~~~flig~lai~GlP------P~~GF~Sk~li~q~~~~~~~~~~~~~~~~~~~~~~~lal~~al 441 (670)
T PRK06521 368 RDMEKLGGLIRRMPWTAWAFLIGCLAISALP------PLNGFVSEWLLFQSLLSSPGLPQWGLKLLVPLAAALLALTAAL 441 (670)
T ss_pred CCHHHHCCHHHHHHHHHHHHHHHHHHHHHCC------CCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 5188958955434799999999999986366------4254999999999998456666158999999999999999999
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC--CCCCCCCCCCCCCCC-----
Q ss_conf 4543331034245787443321000000135533320245656663210000012467--642113455433575-----
Q gi|254780865|r 455 TSFYSWRLMFLTFFGKMRVDKDISHKIHESPLVMQIPLFILAIGSIFFGFIFHDVFFG--SAYSSFWKGALFASS----- 527 (666)
Q Consensus 455 t~~Y~~r~~~~vF~G~~~~~~~~~~~~~e~~~~m~~pl~vLa~~si~~G~~~~~~~~~--~~~~~~~~~~l~~~~----- 527 (666)
T Consensus 442 a~~~fvk~~g~~FlG~pR~~~--~~~~~e~p~~m~~~m~iLA~~cv~~Gl~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 519 (670)
T PRK06521 442 AAMCFVKFYGITFLGRPRSPK--AEQAHEVPRWMRAAMLLLAALCVLLGLLPGWVAPLIAPVAQALVGGRLPAVTVASGL 519 (670)
T ss_pred HHHHHHHHHHHHCCCCCCCCC--CCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 999999999983037999876--557787974357999999999999995548779888899987314445410034420
Q ss_pred CCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH-H-----------HHHH---HHCCHHHHHHHCCCCHHH
Q ss_conf 33320--12336889999999999999999999998704012-4-----------6656---411258999870578168
Q gi|254780865|r 528 SNNVL--ERYHEVPLWVEYSSFIAFFVGFFSAFLMYIICPSL-P-----------KFLS---EKCRFFYCFLQNAWYFDR 590 (666)
Q Consensus 528 ~~~~l--~~~~~~~l~~~~i~ll~~iiGi~la~lly~~~~~~-~-----------~~~~---~~~~~l~~~l~~~~y~d~ 590 (666)
T Consensus 520 ~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~W~cG~~~~~~~~qyta~sF~~plr~~f~~~~~~~~ 599 (670)
T PRK06521 520 LLVPVSSSRASYSPLLVLLFLLALALLPLLLIRRFYSGRRRRGPAWACGYPWENAMAQYSAEGFAQPIRRVFAPLFRLRR 599 (670)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 01464100104568999999999999999999996258753067634678987566664166577999999998764567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999998755766534154999999999999885096288999999999999999999
Q gi|254780865|r 591 IYDCLLVRPIVRLATILWKRVDLSIDKYGPGGIVACVRYLSSYSSRLQTGYLDHYAFSMLIGISILVIVML 661 (666)
Q Consensus 591 lY~~~ivk~~~~ls~~l~~~~D~~i~d~~v~gi~~~v~~~s~~lr~lQtG~i~~Yi~~i~igl~llli~~l 661 (666)
T Consensus 600 ~~~~~~~~~~~~~~~~~~~~~d~-~~~~l~~p~~~~v~~~~~~~r~lQ~G~i~~Yl~yi~~~Lv~lL~v~~ 669 (670)
T PRK06521 600 EDVTMPPPGFDAPARYRARVTDP-FWERLYLPLARLVQRLAARIQRLQSGTIRLYLLYVFATLVVLLLVVA 669 (670)
T ss_pred HHHHCCCCCCCCCCEEEEECCCH-HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 66301334554200244323637-98897689999999999999875188589999999999999999996