HHsearch alignment for GI: 254780865 and conserved domain: PRK08601
>PRK08601 NADH dehydrogenase subunit 5; Validated.
Probab=100.00 E-value=0 Score=561.62 Aligned_cols=332 Identities=27% Similarity=0.381 Sum_probs=279.5
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHH--HHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEECCCCCEEEEEE
Q ss_conf 989999999999999973012421478999--999999999999999999725898528999753101308822357787
Q gi|254780865|r 5 YEVIVFLPLIGAVFSGFFGRLMGKQFADIF--TSLLMVIGAFLSWYVFYEIGFGHDVQVVKREIFPWIIFDGLDIPWGLR 82 (666)
Q Consensus 5 ~~l~~~~Pl~~a~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wi~~~~~~~~~~~~ 82 (666)
T Consensus 7 ~~~l~~~~l~~~~~s~ll~l~-~r~p~~yv~~h~~~~~lp~~v~l~~li~~---~~~~----------------~~g~F~ 66 (506)
T PRK08601 7 LLTLFFIALIIALLSGLLFLN-PRMPLRYVKIHIYILALPVLVALIGLIGI---NGQH----------------VVGPWH 66 (506)
T ss_pred HHHHHHHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHC---CCCE----------------EEECEE
T ss_conf 999999999999998889836-42508999999999999999999999826---8864----------------652533
Q ss_pred EEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 43378999999999999999997475306888661899999999999999986558999988888856889988762034
Q gi|254780865|r 83 IDTLSSVMFVVVNSISAVVHIYSIGYMHDDPHRPRFFSYLSFFTFAMLVLVSSDNLLQMFFGWEGVGLASYLLIGFWSFK 162 (666)
Q Consensus 83 ~D~ls~~~~~~~~~i~~~~~~ys~~y~~~~~~~~~f~~~l~l~~~~m~~~~~s~~l~~~~v~wE~~~l~sy~Li~~~~~~ 162 (666)
T Consensus 67 lD~LS~lM~llVt~VG~lI~~YS~~YM~GD~~y~RFFa~L~LF~~aMLlLVLSdNLllLfvgWE~vgL~SylLIgf~~~~ 146 (506)
T PRK08601 67 LDTLAWLMAFFVLTLGFIIQRFSVRYLLGDRSYRKYFPLFTFTTGFASLAWLSGDLRLMALCWGATLIGLTLLIGLNKFW 146 (506)
T ss_pred EHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 76989999999999999999998997389998236999999999999999995869999999999999999997758775
Q ss_pred HHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 45410363000221224789999999999996205989999875431000124555566666666532024553179999
Q gi|254780865|r 163 ESAIKASMKAFVVNRIGDLGLILAISAIIYLFHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSIAII 242 (666)
Q Consensus 163 ~~~~~a~~k~~~~~~~g~~~~l~~i~~l~~~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (666)
T Consensus 147 ~~a~~AA~kaflv~rvGdv~Lllai~lL~~~~Gt~~~~~il~~~~~~-----------------------~~~~~~~~~i 203 (506)
T PRK08601 147 KVPREAAKISGMLFLISWLALLGAIVWLFIATGEWQLTSVLTNENLA-----------------------LLGTWEKTGI 203 (506)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEHHHHHHHHHHH-----------------------HCCCHHHHHH
T ss_conf 66899999999999799999999999999993862199987000332-----------------------1473368999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999998654334323431240000233221000134566667779999630135781344445677777887630011
Q gi|254780865|r 243 CLLFFLGAMGKSAQLLLHVWLPDAMEGPTPVSALIHAATMVTAGVFLVARMSPLFELSPFVLDCITVLGCITAFFAATVG 322 (666)
Q Consensus 243 ~~l~~~g~~~K~a~~P~h~WLp~A~~aPtpvSAllhs~~mv~~Gvy~l~r~~~~~~~~~~~~~~~~~~g~~t~~~g~~~a 322 (666)
T Consensus 204 ~lLL~~~a~~KsAQ~P~h~WLp~am~~PTPVSAl~HA~-mV~AGv~ll~R~~pl~~-~~~~~~~l~~ig~~T~l~~a~~a 281 (506)
T PRK08601 204 NLLLILAVMIPAAQWPFHRWLIESAVAPTPVSAIMHAG-IVNAGGVMLTRFSPLFH-DDIAQSILLIFSSISVLIGTGIS 281 (506)
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHH-HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999988411753455578766898099999999-99988999999889860-26999999999999999999999
Q ss_pred HCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHCCCCCCCCC
Q ss_conf 10245202443210001353344565531110034655531000122221012321110
Q gi|254780865|r 323 LVQHDIKRVIAYSTCSQLGYMFVALGCRAYGASIFHLFTHAFFKALLFLGSGSVIHAVA 381 (666)
Q Consensus 323 l~q~d~Kr~lAySsis~~G~i~~~~g~~~~~~a~~~~~~H~~~ka~LFl~aG~vi~~~~ 381 (666)
T Consensus 282 l~q~DiK~~lAyST~sQlG~M~~~~GlG~~~~A~fHL~~Ha~FKA~LFL~aGSVVh~~~ 340 (506)
T PRK08601 282 LVQVDYKRQLVGSTMAQMGFMLVQCALGAYSAAIIHLILHGLFKATLFLQSGSIVKRFN 340 (506)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 98877889999999999999999998071989999999999999999953778656899