>TIGR01770 NDH_I_N proton-translocating NADH-quinone oxidoreductase, chain N; InterPro: IPR010096 This entry describes the 14th (based on Escherichia coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This entry does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This entry also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone.; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0042773 ATP synthesis coupled electron transport.

Probab=100.00 E-value=0 Score=466.49 Aligned_cols=403 Identities=21% Similarity=0.348 Sum_probs=333.2 Q ss_pred EEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 87433789999999999999999974753068-88661899999999999999986558999988888856889988762 Q gi|254780865|r 81 LRIDTLSSVMFVVVNSISAVVHIYSIGYMHDD-PHRPRFFSYLSFFTFAMLVLVSSDNLLQMFFGWEGVGLASYLLIGFW 159 (666) Q Consensus 81 ~~~D~ls~~~~~~~~~i~~~~~~ys~~y~~~~-~~~~~f~~~l~l~~~~m~~~~~s~~l~~~~v~wE~~~l~sy~Li~~~ 159 (666) T Consensus 71 f~~D~~~~~~k~~~ll~~~~~~~~~~~~~~~~~~~~~EF~~L~l~~~lG~~~~vS~~~Ll~~y~gLEl~SL~~Y~L~~~~ 150 (491) T TIGR01770 71 FIVDNFALLIKLILLLSTLLLFLLALSYLSKEKINKFEFYILLLFALLGIFLLVSSNDLLSIYLGLELQSLCFYVLAALK 150 (491) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 66746899999999999999999874467751132047899999999999999999999999999999999999998632 Q ss_pred CCCHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH Q ss_conf 03445410363000221224789999999999996205989999875431000124555566666666532024553179 Q gi|254780865|r 160 SFKESAIKASMKAFVVNRIGDLGLILAISAIIYLFHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSI 239 (666) Q Consensus 160 ~~~~~~~~a~~k~~~~~~~g~~~~l~~i~~l~~~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (666) T Consensus 151 r~s~~S~EAglKYfiLGa~sS~llLfG~sliYg~tG~~~~~~~~~~~~~~~~~~~~i----------------~~~~~~l 214 (491) T TIGR01770 151 RKSEFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLFLSNLEKNISNI----------------LINSSLL 214 (491) T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH----------------HHCHHHH T ss_conf 111212356689999999999999999999998676777999999852110234303----------------1048899 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHCC-CCCCCCCHHHHHHHHHHH-HHHHHHH--CCCCCCHHHHHHHHHHHHHHH Q ss_conf 999999999986543343234312400002-332210001345666677-7999963--013578134444567777788 Q gi|254780865|r 240 AIICLLFFLGAMGKSAQLLLHVWLPDAMEG-PTPVSALIHAATMVTAGV-FLVARMS--PLFELSPFVLDCITVLGCITA 315 (666) Q Consensus 240 ~~~~~l~~~g~~~K~a~~P~h~WLp~A~~a-PtpvSAllhs~~mv~~Gv-y~l~r~~--~~~~~~~~~~~~~~~~g~~t~ 315 (666) T Consensus 215 ~~G~~f~~~gl~FKl~avPFH~W~PDVYeGaP~~vt~f~--s~vpKIa~f~~~~rl~~~~~~~~~~~~~~~~~~~a~~Sm 292 (491) T TIGR01770 215 LLGIVFILVGLLFKLSAVPFHMWVPDVYEGAPTSVTAFF--SIVPKIAIFAVLLRLFLYILFEFSAVWQIFLLIIAVLSM 292 (491) T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999999999999861333437864136549999999--999999999999999988865334689999999999999 Q ss_pred HHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCC---CCCCHHHHHHHHHCCHHHHHHHCCCCCC------CCCC---C Q ss_conf 76300111024520244321000135334456553---1110034655531000122221012321------1100---0 Q gi|254780865|r 316 FFAATVGLVQHDIKRVIAYSTCSQLGYMFVALGCR---AYGASIFHLFTHAFFKALLFLGSGSVIH------AVAG---E 383 (666) Q Consensus 316 ~~g~~~al~q~d~Kr~lAySsis~~G~i~~~~g~~---~~~~a~~~~~~H~~~ka~LFl~aG~vi~------~~~~---~ 383 (666) T Consensus 293 ~~G~~~Al~Q~~~KRlLAYSSI~H~Gy~l~~~~~~~~~g~~a~l~Y~~~Y~~~~~g~F~~l~~L~~~rnv~~~~~~~ry~ 372 (491) T TIGR01770 293 LIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAVLFYIFIYALMSLGAFGVLLLLRSIRNVYKKKDEERYI 372 (491) T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH T ss_conf 99999997310403777886799999999999973031489999999999999999999999983144420127762133 Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCC Q ss_conf 01101277615466999999988642101100000000244321788888898641024444421022113454333103 Q gi|254780865|r 384 QDMRRMGGLYPHLPRTCWMMIVGTLALTGFGIPETSIGFSGFFSKDIILEVAYTSSHFTFVFFLLLFAAFLTSFYSWRLM 463 (666) Q Consensus 384 ~~i~~~gGl~~~~P~~~~~~~i~~lsl~G~P~~~~~~p~~gf~sk~~il~~~~~~~~~~~~~~~~~~~~~lt~~Y~~r~~ 463 (666) T Consensus 373 ~~~~~~~gL~~~~p~~A~~~~i~~FSlaGIP------P~aGF~~K~~vf~~~~~~~~~-~L~~~~v~~S~~~~fYYlR~~ 445 (491) T TIGR01770 373 EYISDLAGLAKTNPLLAILILIILFSLAGIP------PLAGFFGKFYVFFALLKSGLV-LLAVIAVLISVISAFYYLRVV 445 (491) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHHHHHHHH T ss_conf 3289999899882999999999999963023------268999999999999967815-579999999999999999999 Q ss_pred CCCCCCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCC Q ss_conf 4245787443321000000135533320245656663210000012 Q gi|254780865|r 464 FLTFFGKMRVDKDISHKIHESPLVMQIPLFILAIGSIFFGFIFHDV 509 (666) Q Consensus 464 ~~vF~G~~~~~~~~~~~~~e~~~~m~~pl~vLa~~si~~G~~~~~~ 509 (666) T Consensus 446 k~myf~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~gl~P~~~ 490 (491) T TIGR01770 446 KVMYFDKPEV-LERRIIIAPISKAQSLLLSITALFLVFLGLFPSLI 490 (491) T ss_pred HHHHCCCCCC-CHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 9998076421-20232145554256799999999999999710114

HHsearch alignment for GI: 254780865 and conserved domain: TIGR01770