HHsearch alignment for GI: 254780865 and conserved domain: pfam00361

>pfam00361 Oxidored_q1 NADH-Ubiquinone/plastoquinone (complex I), various chains. This family is part of complex I which catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane.
Probab=100.00  E-value=0  Score=482.95  Aligned_cols=265  Identities=37%  Similarity=0.670  Sum_probs=240.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf             65589999888888568899887620344541036300022122478999999999999620598999987543100012
Q gi|254780865|r  135 SDNLLQMFFGWEGVGLASYLLIGFWSFKESAIKASMKAFVVNRIGDLGLILAISAIIYLFHSVDFDAVFQNASHYWKIGN  214 (666)
Q Consensus       135 s~~l~~~~v~wE~~~l~sy~Li~~~~~~~~~~~a~~k~~~~~~~g~~~~l~~i~~l~~~~gs~~~~~~~~~~~~~~~~~~  214 (666)
T Consensus         1 s~dl~~~~v~~El~~l~~y~Li~~~~~~~~~~~Aa~ky~i~~~~~s~~lL~gi~~ly~~~gt~~~~~~~~~~--------   72 (270)
T pfam00361         1 SNNLLLFYLGWELLGLPSYLLIGFWGYSPRSLEASLKYFLYTALGSLFLLFGILYIYGLTGSLSFTLLFLFG--------   72 (270)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHC--------
T ss_conf             974999999999999999999883499999999999999999999999999999999986222699998643--------


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCC-CCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             4555566666666532024553179999999999986543343234312400002-332210001345666677799996
Q gi|254780865|r  215 SVSSGMVSHRSFSFFGIDVHPHDSIAIICLLFFLGAMGKSAQLLLHVWLPDAMEG-PTPVSALIHAATMVTAGVFLVARM  293 (666)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~K~a~~P~h~WLp~A~~a-PtpvSAllhs~~mv~~Gvy~l~r~  293 (666)
T Consensus        73 -------------------~~~~~~~~~~~l~~~g~~~K~~~~PfH~Wlpday~~ap~~~s~~-ls~v~~~~g~~~l~r~  132 (270)
T pfam00361        73 -------------------LNSNGLLLLSLLLLVAFLVKSPQFPFHFWLPDAHEGPPPVSSLI-LATTLKKAGLYLLLRL  132 (270)
T ss_pred             -------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH-HHHHHHHHHHHHHHHH
T ss_conf             -------------------56348999999999999999948624755778857998789999-9989999999999999


Q ss_pred             HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCC---CCCCHHHHHHHHHCCHHHHH
Q ss_conf             301357813444456777778876300111024520244321000135334456553---11100346555310001222
Q gi|254780865|r  294 SPLFELSPFVLDCITVLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVALGCR---AYGASIFHLFTHAFFKALLF  370 (666)
Q Consensus       294 ~~~~~~~~~~~~~~~~~g~~t~~~g~~~al~q~d~Kr~lAySsis~~G~i~~~~g~~---~~~~a~~~~~~H~~~ka~LF  370 (666)
T Consensus       133 ~~~~~~~~~~~~~l~~~~~~s~i~g~~~Al~Q~dlKrllAYSSis~~G~il~~~~~~~~~~~~~~~~~~i~h~~~k~~lF  212 (270)
T pfam00361       133 SNLFSSSNLISYILLILGILSMLLGSLGALNQTDLKKLIAYSSISHMGFVMMGILSLGSYGIIGAIIHLISHGFFSALLF  212 (270)
T ss_pred             HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             98613237899999999999999999999833027799999999999999999998657799999999999999999999


Q ss_pred             HHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             2101232111000011012776154669999999886421011000000002443217888888
Q gi|254780865|r  371 LGSGSVIHAVAGEQDMRRMGGLYPHLPRTCWMMIVGTLALTGFGIPETSIGFSGFFSKDIILEV  434 (666)
Q Consensus       371 l~aG~vi~~~~~~~~i~~~gGl~~~~P~~~~~~~i~~lsl~G~P~~~~~~p~~gf~sk~~il~~  434 (666)
T Consensus       213 ~~~g~i~~-~~~~~~i~~l~Gl~~~~P~~~~~~~i~~lsl~GiP------p~~GF~~K~~i~~s  269 (270)
T pfam00361       213 LLAGLIIH-RSGTRDLRNYGGLFNSMPILALLLLLLLLSLMGLP------PLLGFISKFLILES  269 (270)
T ss_pred             HHHHHHHH-HCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHC
T ss_conf             99999998-75887099870969882999999999999998775------76038899999864