RPSBLAST alignment for GI: 254780865 and conserved domain: TIGR01770
>gnl|CDD|162524 TIGR01770, NDH_I_N, proton-translocating NADH-quinone oxidoreductase, chain N. NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. Length = 468
Score = 89.2 bits (222), Expect = 3e-18
Identities = 86/394 (21%), Positives = 158/394 (40%), Gaps = 42/394 (10%)
Query: 118 FFSYLSFFTFAMLVLVSSDNLLQMFFGWEGVGLASYLLIGFWSFKESAIKASMKAFVVNR 177
F+ L F + +LVSS++LL ++ G E L Y+L + +A +K F++
Sbjct: 104 FYILLLFALLGIFLLVSSNDLLSIYLGLELQSLCFYVLAALKRKSRFSTEAGLKYFILGA 163
Query: 178 IGDLGLILAISAIIYLFH-SVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPH 236
GL+L ++IY F S++F+ + S+ + + G+V
Sbjct: 164 FSS-GLLLFGISLIYGFTGSLNFEDLLLFLSNLGNDISLLLLGIV--------------- 207
Query: 237 DSIAIICLLFFLGAMGKSAQLLLHVWLPDAMEG-PTPVSALIHAATMVTA-GVFLVARMS 294
+G + K + + H+W+PD EG PTPV+A + V L
Sbjct: 208 --------FILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVLLRLFGY 259
Query: 295 PLFELSPFVLDCITVLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVALGC---RA 351
LF SP + + ++ L Q +KR++AYS+ S +GY+ + L
Sbjct: 260 ILFAFSPIWQIFLLICAVLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEG 319
Query: 352 YGASIFHLFTHAFFKALLFLGSGSVIHAVAGEQD-MRRMGGLYPHLPRTCWMMIVGTLAL 410
A +F++F +A F + + + GL+ P ++++ +L
Sbjct: 320 IKAVLFYIFIYALMSIGAFGVLALLRSRKDEWIEYISDFAGLFKTNPLIAILILIFMFSL 379
Query: 411 TGFGIPETSIGFSGFFSKDIILEVAYTSSHFTFVFFLLLFAAFLTSFYSWRLMFLTFFGK 470
GIP +GFF K + S + +L + +++FY R++ + +F K
Sbjct: 380 A--GIPP----LAGFFGKFYVFFALLKSGLYLLAVIAILTSV-ISAFYYLRVVKVMYFDK 432
Query: 471 MRVDKDISHKIHESPLVMQIPLFILAIGSIFFGF 504
+ + L I A+ +F G
Sbjct: 433 PERR----IFSNPQSKAQSLLLSISALFIVFLGL 462