RPSBLAST alignment for GI: 254780865 and conserved domain: TIGR01770

>gnl|CDD|162524 TIGR01770, NDH_I_N, proton-translocating NADH-quinone oxidoreductase, chain N. NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. Length = 468
 Score = 89.2 bits (222), Expect = 3e-18
 Identities = 86/394 (21%), Positives = 158/394 (40%), Gaps = 42/394 (10%)

Query: 118 FFSYLSFFTFAMLVLVSSDNLLQMFFGWEGVGLASYLLIGFWSFKESAIKASMKAFVVNR 177
           F+  L F    + +LVSS++LL ++ G E   L  Y+L         + +A +K F++  
Sbjct: 104 FYILLLFALLGIFLLVSSNDLLSIYLGLELQSLCFYVLAALKRKSRFSTEAGLKYFILGA 163

Query: 178 IGDLGLILAISAIIYLFH-SVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPH 236
               GL+L   ++IY F  S++F+ +    S+     + +  G+V               
Sbjct: 164 FSS-GLLLFGISLIYGFTGSLNFEDLLLFLSNLGNDISLLLLGIV--------------- 207

Query: 237 DSIAIICLLFFLGAMGKSAQLLLHVWLPDAMEG-PTPVSALIHAATMVTA-GVFLVARMS 294
                      +G + K + +  H+W+PD  EG PTPV+A       +    V L     
Sbjct: 208 --------FILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVLLRLFGY 259

Query: 295 PLFELSPFVLDCITVLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVALGC---RA 351
            LF  SP     + +   ++        L Q  +KR++AYS+ S +GY+ + L       
Sbjct: 260 ILFAFSPIWQIFLLICAVLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEG 319

Query: 352 YGASIFHLFTHAFFKALLFLGSGSVIHAVAGEQD-MRRMGGLYPHLPRTCWMMIVGTLAL 410
             A +F++F +A      F     +        + +    GL+   P    ++++   +L
Sbjct: 320 IKAVLFYIFIYALMSIGAFGVLALLRSRKDEWIEYISDFAGLFKTNPLIAILILIFMFSL 379

Query: 411 TGFGIPETSIGFSGFFSKDIILEVAYTSSHFTFVFFLLLFAAFLTSFYSWRLMFLTFFGK 470
              GIP      +GFF K  +      S  +      +L +  +++FY  R++ + +F K
Sbjct: 380 A--GIPP----LAGFFGKFYVFFALLKSGLYLLAVIAILTSV-ISAFYYLRVVKVMYFDK 432

Query: 471 MRVDKDISHKIHESPLVMQIPLFILAIGSIFFGF 504
                      +       + L I A+  +F G 
Sbjct: 433 PERR----IFSNPQSKAQSLLLSISALFIVFLGL 462