RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780865|ref|YP_003065278.1| NADH dehydrogenase subunit L [Candidatus Liberibacter asiaticus str. psy62] (666 letters) >gnl|CDD|177253 MTH00210, ND5, NADH dehydrogenase subunit 5; Provisional. Length = 616 Score = 573 bits (1478), Expect = e-164 Identities = 287/655 (43%), Positives = 400/655 (61%), Gaps = 58/655 (8%) Query: 4 IYEVIVFLPLIGAVFSGFFGRLMGKQFADIFTSLLMVIGAFLSWYVFYEIGFGHDVQVVK 63 +Y +++FLPL+ A+ SG FGR +G + A I TS +VI A +S +FYE +K Sbjct: 1 MYILVLFLPLLSAIISGLFGRKIGTKGAGILTSSCIVISAIVSCCIFYETTLNGSATYIK 60 Query: 64 REIFPWIIFDGLDIPWGLRIDTLSSVMFVVVNSISAVVHIYSIGYMHDDPHRPRFFSYLS 123 ++ W + L +GL+ D+L+S M +V+ S+SA+VHIYS GYM DPH PRF SYLS Sbjct: 61 --LWRWFDSELLTTYFGLQFDSLTSTMLIVITSVSALVHIYSTGYMSGDPHIPRFMSYLS 118 Query: 124 FFTFAMLVLVSSDNLLQMFFGWEGVGLASYLLIGFWSFKESAIKASMKAFVVNRIGDLGL 183 FTF M+VLV+SDN +Q+F GWEGVGL SYLLI FW + A KA++KA ++NR+GD+GL Sbjct: 119 LFTFLMIVLVTSDNYVQLFIGWEGVGLCSYLLINFWLTRIKANKAAIKAMLINRVGDIGL 178 Query: 184 ILAISAIIYLFHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSIAIIC 243 +LA+ I+ F +++F + +S+ ++ +S+ IIC Sbjct: 179 VLAMIMILKEFGTLEFSTI-----------SSLLVTNINK-------------ESLTIIC 214 Query: 244 LLFFLGAMGKSAQLLLHVWLPDAMEGPTPVSALIHAATMVTAGVFLVARMSPLFELSPFV 303 LL F+GA+GKSAQL LH WLPDAMEGPTPVSALIHAATMVTAGVFL+ R PLFE SP Sbjct: 215 LLLFIGAVGKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLIIRSGPLFEGSPLA 274 Query: 304 LDCITVLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVALGCRAYGASIFHLFTHA 363 L +T+LG +TAFFAATVG+VQ+D+K+VIAYSTCSQLGYM + G Y S+FHL HA Sbjct: 275 LTIVTILGALTAFFAATVGVVQNDLKKVIAYSTCSQLGYMVMVCGISNYSTSLFHLMNHA 334 Query: 364 FFKALLFLGSGSVIHAVAGEQDMRRMGGLYPHLPRTCWMMIVGTLALTGFGIPETSIGFS 423 FFKALLFL +GSVIHAV+ EQDMR+MGGL +P T M+++G+L+L GF + Sbjct: 335 FFKALLFLSAGSVIHAVSDEQDMRKMGGLIKSIPFTYVMILIGSLSLMGFPY------LT 388 Query: 424 GFFSKDIILEVAYTSSHFTFVFFLLLFAAFLTSFYSWRLMFLTFFGKMRVDKDISHKIHE 483 GF+SKD+ILE+ Y + F ++L F+A LT+FYS RL++LTF K++ +HE Sbjct: 389 GFYSKDLILELTYDKYYIAFAYWLGSFSALLTAFYSIRLIYLTFITNTNSKKEVFIGVHE 448 Query: 484 SPLVMQIPLFILAIGSIFFGFIFHDVFFGSAYSSFWKGALFASSSNNVLERYHEVPLWVE 543 S + PL +LA GSIF G++ +V + VP ++ Sbjct: 449 SSWNITFPLLLLAFGSIFVGYLGKEVVLSNVIPPI-------------------VPNSIK 489 Query: 544 YSSFIAFFVGFFSAFLMY-----IICPSLPKFLSEKCRFFYCFLQNAWYFDRIYDCLLVR 598 + +G AF++Y +I S Y FL +AW F+ + + +V+ Sbjct: 490 MIPLLFSLLGALLAFVIYNSMVFLIKISRRGVSIRLYHVIYTFLNSAWQFNYVINHFIVK 549 Query: 599 PIVRLA-TILWKRVDLSIDKY-GPGGIVACVRYLSSYSSRLQTGYLDHYAFSMLI 651 I + I ++ +D + + GP GI + L+ S LQ+G + +YA M+I Sbjct: 550 NIWKFGHLITYRIIDRGLLEIIGPRGISKVLIKLTQKISNLQSGMVFNYALIMII 604 >gnl|CDD|164593 MTH00020, ND5, NADH dehydrogenase subunit 5; Reviewed. Length = 610 Score = 546 bits (1408), Expect = e-156 Identities = 295/660 (44%), Positives = 404/660 (61%), Gaps = 59/660 (8%) Query: 4 IYEVIVFLPLIGAVFSGFFGRLMGKQFADIFTSLLMVIGAFLSWYVFYEIGFGHDVQVVK 63 +Y +++FLPL+GA+ SG FGR +G++ A I TS ++I S+ +FYEI F +K Sbjct: 1 MYLLVLFLPLLGALLSGLFGRKIGEKGAGILTSSCLIISLSWSFLIFYEILFNSSTTYIK 60 Query: 64 REIFPWIIFDGLDIPWGLRIDTLSSVMFVVVNSISAVVHIYSIGYMHDDPHRPRFFSYLS 123 ++ W+ D L + +GL+ D L ++M +VV ++S +VHI+S YM DPH PRF SYLS Sbjct: 61 --LWRWLDSDLLTVYFGLQFDGLVAIMLLVVTTVSTLVHIFSTAYMRGDPHIPRFMSYLS 118 Query: 124 FFTFAMLVLVSSDNLLQMFFGWEGVGLASYLLIGFWSFKESAIKASMKAFVVNRIGDLGL 183 FTF M+VLV+SDN LQ+F GWEGVGL SYLLI FW + A KA++KA +VNR+GD+GL Sbjct: 119 LFTFLMVVLVTSDNYLQLFIGWEGVGLCSYLLINFWLTRIEANKAAIKAMLVNRVGDIGL 178 Query: 184 ILAISAIIYLFHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSIAIIC 243 +LA+ + F S+DF +VF N V S P I +IC Sbjct: 179 LLAMFLLWDRFGSLDFSSVF----------NMVVSA---------------PSSDITLIC 213 Query: 244 LLFFLGAMGKSAQLLLHVWLPDAMEGPTPVSALIHAATMVTAGVFLVARMSPLFELSPFV 303 L F+GA+GKSAQL LH WLPDAMEGPTPVSALIHAATMVTAGVFL+ R SPLFE +P Sbjct: 214 LFLFIGAVGKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLLIRSSPLFEQAPLA 273 Query: 304 LDCITVLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVALGCRAYGASIFHLFTHA 363 L +T++G +T FFAATVGLVQ+D+K+VIAYSTCSQLGYM VA G Y S+FHL HA Sbjct: 274 LIIVTIVGSLTVFFAATVGLVQNDLKKVIAYSTCSQLGYMVVACGLSHYSISLFHLMNHA 333 Query: 364 FFKALLFLGSGSVIHAVAGEQDMRRMGGLYPHLPRTCWMMIVGTLALTGFGIPETSIGFS 423 FFKALLFL +GSVIHA++ EQDMR+MGGL LP T ++G+L+L GF + Sbjct: 334 FFKALLFLSAGSVIHALSDEQDMRKMGGLISFLPLTYIFFLIGSLSLMGFPY------LT 387 Query: 424 GFFSKDIILEVAYTSSHFTFVFFLLLFAAFLTSFYSWRLMFLTFFGKMRVDKDISHKIHE 483 GF+SKD+ILE+A+ + F ++L F+A LT+FYS RL++LTF + K + +HE Sbjct: 388 GFYSKDLILELAFGQYYLIFAYWLGCFSALLTAFYSIRLIYLTFLSNTNLKKAVFFHLHE 447 Query: 484 SPLVMQIPLFILAIGSIFFGFIFHDVFFGSAYSSFWKGALFASSSNNVLERYHEVPLWVE 543 + +PL ILA+GSIF G++ ++ + F + + VPL ++ Sbjct: 448 GDWNLLLPLGILALGSIFVGYLAKEMIWS-----------FQITLPPI------VPLSIK 490 Query: 544 YSSFIAFFVGFFSAFLMYI-ICPSLPKFLSEKCRFFYCFLQNAWYFDRIYDCLLVRPIVR 602 G ++Y + S R Y FL +AW F+ I + L++ I + Sbjct: 491 LLPVFLSLGGIGLVIILYFYSSKTFRVPFSFIGRNSYTFLGSAWQFNYILNYFLIKKIWK 550 Query: 603 LATILWKRVDLSIDK-----YGPGGIVACVRYLSSYSSRLQTGYLDHYAFSMLIGISILV 657 ++ R IDK GP GI + L+ S LQ+G + +YA +LIG++I + Sbjct: 551 GGHLISYRT---IDKGVLELVGPKGISNFLIILTQGLSSLQSGLVFNYALVILIGVAIFI 607 >gnl|CDD|31213 COG1009, NuoL, NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion / Inorganic ion transport and metabolism]. Length = 606 Score = 458 bits (1181), Expect = e-129 Identities = 272/657 (41%), Positives = 369/657 (56%), Gaps = 59/657 (8%) Query: 8 IVFLPLIGAVFSGFFGRLMGKQFADIFTSLLMVIGAFLSWYVFYEIGFGHDVQVVKREIF 67 I+ LPLIGA+ + GR G++ A L ++ LS + + + G + + + Sbjct: 4 IILLPLIGALIALLLGRT-GRRLAAWLALLAPLVSLLLSALILFIVLAGPVLVTL----Y 58 Query: 68 PWIIFDGLDIPWGLRIDTLSSVMFVVVNSISAVVHIYSIGYMHDDPHRPRFFSYLSFFTF 127 W+ GL+ +GLRID LS +M ++V + ++H+YSIGYM DP RFF+YL FT Sbjct: 59 TWLPSGGLN--FGLRIDGLSLLMALLVTGVGFLIHLYSIGYMSHDPGLGRFFAYLLLFTG 116 Query: 128 AMLVLVSSDNLLQMFFGWEGVGLASYLLIGFWSFKESAIKASMKAFVVNRIGDLGLILAI 187 +ML LV SDNLL +F WE GLASYLLIGFW + SA +A+ KAF+V R+GDLGL+L I Sbjct: 117 SMLGLVLSDNLLLLFVFWELTGLASYLLIGFWYSRPSARRAARKAFLVTRVGDLGLLLGI 176 Query: 188 SAIIYLFHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSIAIICLLFF 247 + L + A+ + I + + +I LL Sbjct: 177 ILLYLLTGTTLLSEELFAAALFADISPPL----------------------LTLILLLLL 214 Query: 248 LGAMGKSAQLLLHVWLPDAMEGPTPVSALIHAATMVTAGVFLVARMSPLFELSPFVLDCI 307 LGA GKSAQ H WLPDAMEGPTPVSAL+HAATMV AGV+L+AR+SPLF LSP L + Sbjct: 215 LGAFGKSAQFPFHTWLPDAMEGPTPVSALLHAATMVKAGVYLLARLSPLFALSPEALWLV 274 Query: 308 TVLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVA--LGCRAYGASIFHLFTHAFF 365 ++G +TA AA + LVQ+DIKR++AYST SQLGYMFVA LG AY A+IFHL THAFF Sbjct: 275 ILVGAVTALLAALIALVQNDIKRILAYSTISQLGYMFVALGLGSLAYEAAIFHLVTHAFF 334 Query: 366 KALLFLGSGSVIHAVAGEQDMRRMGGLYPHLPRTCWMMIVGTLALTGFGIPETSIGFSGF 425 KALLFL +GSVIHA G +D+R++GGL +P T ++G LAL G F+GF Sbjct: 335 KALLFLSAGSVIHA-TGTRDIRKLGGLRKKMPITFVAFLIGALALAGVPP------FAGF 387 Query: 426 FSKDIILEVAYTSSH--FTFVFFLLLFAAFLTSFYSWRLMFLTFFGKMRVDKDISHKIHE 483 FSKD+ILE A +SH + L L A LT+FYS+RL+FL FFGK R +++ H HE Sbjct: 388 FSKDMILEAALAASHLSGGLLLLLALIGALLTAFYSFRLIFLVFFGKPREPEELPH-AHE 446 Query: 484 SPLVMQIPLFILAIGSIFFGFIFHDVFFGSAYSSFWKGALFASSSNNVLERYHEVPLWVE 543 +P VM +PL +LAI S+ G + F A + + LW Sbjct: 447 APWVMLLPLVVLAILSLILGLLILAPFLFPAVF--------------AADELLHLALWHG 492 Query: 544 YS-SFIAFFVGFFSAFLMYIICPSLPKFLSEKCRFFYCFLQNAWYFDRIYDCLLVRPIVR 602 + + VG L+Y+ Y L N +Y D++Y + V+ + Sbjct: 493 LNLPLLLSIVGIVLGILLYLKPILKK--SILGLFGLYTLLYNDYYLDKLYTLVFVKTVAL 550 Query: 603 LATILWKRVDLSIDKYGPGGIVACVRYLSSYSSRLQTGYLDHYAFSMLIGISILVIV 659 LA LW DL+ G + + + R QTGYL YA S+++G +L+I+ Sbjct: 551 LAGRLWDYFDLTFID-GIVNLGRVTLFSGNGLRRSQTGYLQLYALSLVVGALLLLIL 606 >gnl|CDD|164604 MTH00032, ND5, NADH dehydrogenase subunit 5; Provisional. Length = 669 Score = 423 bits (1088), Expect = e-119 Identities = 277/703 (39%), Positives = 382/703 (54%), Gaps = 76/703 (10%) Query: 4 IYEVIVFLPLIGAVFSGFFGRLMGKQFADIFTSLLMVIGAFLSWYVFYEIGFGHDVQVVK 63 +Y +++ LP I A GFFGRL+G + I +++ M ++ ++ YE+ VV Sbjct: 1 MYLLVLLLPFINAFLLGFFGRLIGTIGSGILSTICMGSSTLIALFLAYEVLIND--AVVH 58 Query: 64 REIFPWIIFDGLDIPWGLRIDTLSSVMFVVVNSISAVVHIYSIGYMHDDPHRPRFFSYLS 123 E++ WI + GL DTLS M +V++SIS +VHIYS YM DDPH PRF YLS Sbjct: 59 IELYKWIESEIFITHIGLLYDTLSVTMLLVISSISTLVHIYSTSYMSDDPHVPRFLCYLS 118 Query: 124 FFTFAMLVLVSSDNLLQMFFGWEGVGLASYLLIGFWSFKESAIKASMKAFVVNRIGDLGL 183 FTF M+VLV+SDN LQ+F GWEGVG+ SYLL+ FW+ + A KA++KA VVNR+GD+G+ Sbjct: 119 LFTFLMMVLVTSDNYLQLFIGWEGVGVCSYLLVAFWTTRIQANKAAIKAIVVNRVGDVGV 178 Query: 184 ILAISAIIYLFHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSIAIIC 243 IL + I S+DF G SV SG++ R + G P AII Sbjct: 179 ILGMVLIYKTIGSLDFLTFN---------GGSVGSGIMD-RGYYGGGAYESPLAPFAIIG 228 Query: 244 LLFFLGAMGKSAQLLLHVWLPDAMEGPTPVSALIHAATMVTAGVFLVARMSPLFELSPFV 303 +L +G +GKSAQL LH WLPDAMEGPTPVSALIHAATMVTAGVFL+ R PLFE +P Sbjct: 229 ILLLIGCIGKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLMIRSFPLFEKAPLT 288 Query: 304 LDCITVLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVALGCR-AYGASIFHLFTH 362 L IT+ G +TAFFAATVGLVQ+D+K+VIAYSTCSQLGYM + +G ++ +FHL H Sbjct: 289 LLIITIFGALTAFFAATVGLVQNDLKKVIAYSTCSQLGYMVLIIGIEGSHNVGLFHLVNH 348 Query: 363 AFFKALLFLGSGSVIHAVA-GEQDMRRMGGLYPHLPRTCWMMIVGTLALTGFGIPETSIG 421 AFFKALLFL +GSVIH+ EQDMR+MGGL +P T MM++G+ ++ G Sbjct: 349 AFFKALLFLSAGSVIHSTTVDEQDMRKMGGLIHSIPFTYTMMLIGSFSIMGLPY------ 402 Query: 422 FSGFFSKDIILEVAY------------------------------------TSSHFTFVF 445 +GF+SKD+ILE+ Y S F F Sbjct: 403 LTGFYSKDLILELTYSGRNMGIPFGSSLLKIQGDIGIKKDDRGSIGGPEGYPSRGSAFAF 462 Query: 446 FLLLFAAFLTSFYSWRLMFLTFFGKMRVDKD--ISHKIHESPLVMQIPLFILAIGSIFFG 503 +L AA LT+FYS RL+++TF K+ IS I+ + L +L G+IF G Sbjct: 463 WLGTVAALLTAFYSIRLVYITFIISPNSPKESLISSHINIVDKRVLTVLSLLCFGAIFVG 522 Query: 504 FIFHDVFFGSAYSSFWKGALFASSSNNVLERYHEVPLWVEYSSFIAFFVGFFSAFLMYII 563 ++ D+ G + + L + + + GF +++ Sbjct: 523 YLIQDILIGDIEHPIVPPLIKVMPTLMGLFGMGLCLWAQKGTREGELYWGFDPIGPSFLL 582 Query: 564 CPSLPKFLSEKCRFFYCFLQNAWYFDRIYDCLLVRPIVRLATI-LWKRVDLS-IDKYGPG 621 Y FL AW D + + L+ P+ ++K +D ++ +GP Sbjct: 583 S-------------IYSFLGGAWQGDHLINKLVAIPLFSFGHWGIYKTLDRGWLELFGPQ 629 Query: 622 GIVACVRYLSSYSSRLQTGYLDHYAFSMLIGISILVIVMLLQG 664 GI +S + S LQ+G + YA L+ +S +I + L G Sbjct: 630 GISTIALRVSQFISNLQSGVISRYA---LVLLSFTIIFLALWG 669 >gnl|CDD|176967 CHL00025, ndhF, NADH dehydrogenase subunit 5. Length = 741 Score = 378 bits (974), Expect = e-105 Identities = 203/503 (40%), Positives = 280/503 (55%), Gaps = 47/503 (9%) Query: 1 MAMIYE---VIVFLPLIGAVFSG---FFGRLMGKQFADI---FTSLLMVIGAFLSWYVFY 51 M Y+ +I FLPL + G K + + LL+ I S + Sbjct: 1 MEHTYQYAWIIPFLPLPVPMLIGLGLLLFPTATKNLRRMWAFPSILLLSIVMIFSLNLSI 60 Query: 52 EIGFGHDVQVVKREIFPWIIFDGLDIPWGLRIDTLSSVMFVVVNSISAVVHIYSIGYMHD 111 + G + + ++ W I + + +G ID L+S+M +++ ++ +V IYS YM Sbjct: 61 QQINGSSIY---QYLWSWTINNDFSLEFGYLIDPLTSIMLILITTVGILVLIYSDNYMSH 117 Query: 112 DPHRPRFFSYLSFFTFAMLVLVSSDNLLQMFFGWEGVGLASYLLIGFWSFKESAIKASMK 171 D RFF+YLSFF +ML LV+S NL+Q++ WE VG+ SYLLIGFW + A A K Sbjct: 118 DQGYLRFFAYLSFFNTSMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPIAANACQK 177 Query: 172 AFVVNRIGDLGLILAISAIIYLFHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGI 231 AFV NR+GD GL+L I ++ S +F +F+ N + + V+ F Sbjct: 178 AFVTNRVGDFGLLLGILGFYWITGSFEFRDLFE------IFNNLIYNNEVN----LLFAT 227 Query: 232 DVHPHDSIAIICLLFFLGAMGKSAQLLLHVWLPDAMEGPTPVSALIHAATMVTAGVFLVA 291 + L FLG + KSAQ LHVWLPDAMEGPTP+SALIHAATMV AG+FLVA Sbjct: 228 ---------LCAFLLFLGPVAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFLVA 278 Query: 292 RMSPLFELSPFVLDCITVLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVALGCRA 351 R+ PLF + P++++ I+++G ITA AT+ L Q DIKR +AYST SQLGYM +ALG + Sbjct: 279 RLLPLFIVIPYIMNLISLIGIITALLGATLALAQKDIKRGLAYSTMSQLGYMMLALGIGS 338 Query: 352 YGASIFHLFTHAFFKALLFLGSGSVIH---AVAG-----EQDMRRMGGLYPHLPRTCWMM 403 Y A++FHL THA+ KALLFLGSGSVIH + G Q+M MGGL ++P T Sbjct: 339 YRAALFHLITHAYSKALLFLGSGSVIHSMEPIVGYSPDKSQNMVLMGGLRKYMPITKTTF 398 Query: 404 IVGTLALTGFGIPETSIGFSGFFSKDIILEVAYTSSHFTFVFFLLLFAAFLTSFYSWRLM 463 ++GTL+L GIP + F+SKD IL ++ S + A LT+FY +R+ Sbjct: 399 LLGTLSLC--GIPP----LACFWSKDEILNDSWLYS--PIFAIIAWSTAGLTAFYMFRIY 450 Query: 464 FLTFFGKMRVDKDISHKIHESPL 486 LTF G +RV S Sbjct: 451 LLTFEGHLRVHFQNYSGKKNSSF 473 Score = 47.6 bits (114), Expect = 1e-05 Identities = 49/204 (24%), Positives = 74/204 (36%), Gaps = 33/204 (16%) Query: 482 HESPLVMQIPLFILAIGSIFFGFI---FHDVFFGSAYSSFW---KGALFASSSNNVLERY 535 HES M PL +L + ++F GFI F+ S W L +SNN ++ Y Sbjct: 537 HESDNTMLFPLLVLVLFTLFVGFIGIPFNQEGIDLDILSKWLTPSINLLHQNSNNSVDWY 596 Query: 536 HEVPLWVEYSSFIAFFVGFFSAFLMY---------------IICPSLPKFLSEKCR-FFY 579 E +S IAFF G F A +Y + + +K Y Sbjct: 597 -EFLTNAIFSVSIAFF-GIFIASFLYGPVYSSLQNLDLINSFVKGGPKRIFLDKIINVIY 654 Query: 580 CFLQNAWYFDRIYDCLLVRPIVRLATILWKRVDLSIDKYGPGGIVACVRYLSSYSSR--- 636 + N Y D Y ++ I LA + D+ GI V S + Sbjct: 655 NWSYNRGYIDAFYTISFIKGIRGLAELT-----HFFDRRVIDGITNGVGITSFFVGEGIK 709 Query: 637 -LQTGYLDHYAFSMLIGISILVIV 659 + G + Y F L +SI +++ Sbjct: 710 YVGGGRISSYLFLYLFYVSIFLLI 733 >gnl|CDD|177100 MTH00004, ND5, NADH dehydrogenase subunit 5; Validated. Length = 602 Score = 356 bits (917), Expect = 9e-99 Identities = 178/445 (40%), Positives = 247/445 (55%), Gaps = 50/445 (11%) Query: 67 FPWIIFDGLDIPWGLRIDTLSSVMFV-----VVNSISAVVHIYSIGYMHDDPHRPRFFSY 121 +PWI +IP ++D S +MF+ V SI +S YM DPH +FF Y Sbjct: 66 WPWIFTTTFNIPISFKLDQYS-LMFLPIALFVTWSILE----FSTWYMASDPHITKFFKY 120 Query: 122 LSFFTFAMLVLVSSDNLLQMFFGWEGVGLASYLLIGFWSFKESAIKASMKAFVVNRIGDL 181 L F AML+L++++N+ Q+F GWEGVG+ S+LLIG+WS + A A+++A + NRIGD+ Sbjct: 121 LLIFLIAMLILITANNMFQLFIGWEGVGIMSFLLIGWWSGRAEANTAALQAIIYNRIGDI 180 Query: 182 GLILAISAIIYLFHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSIAI 241 GLIL+++ + ++ + +F P + + Sbjct: 181 GLILSMAWLAMTLNTWEIQQLF------------------------------SPTQTPTL 210 Query: 242 ICLLFFLGAMGKSAQLLLHVWLPDAMEGPTPVSALIHAATMVTAGVFLVARMSPLFELSP 301 L L A GKSAQ LH WLP AMEGPTPVSAL+H++TMV AG+FL+ R PL + + Sbjct: 211 PLLGLILAATGKSAQFGLHPWLPAAMEGPTPVSALLHSSTMVVAGIFLLIRTHPLLQNNQ 270 Query: 302 FVLDCITVLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVALGCRAYGASIFHLFT 361 L LG +T FAAT L Q+DIK++IA+ST SQLG M V +G + H+ T Sbjct: 271 TALTICLCLGALTTLFAATCALTQNDIKKIIAFSTSSQLGLMMVTIGLNQPQLAFLHIST 330 Query: 362 HAFFKALLFLGSGSVIHAVAGEQDMRRMGGLYPHLPRTCWMMIVGTLALTGFGIPETSIG 421 HAFFKA+LFL SGS+IH + EQD+R+MGGL LP T + +G LAL G P Sbjct: 331 HAFFKAMLFLCSGSIIHNLNNEQDIRKMGGLQKTLPITSSCLTIGNLALM--GTP----- 383 Query: 422 F-SGFFSKDIILEVAYTSSHFTFVFFLLLFAAFLTSFYSWRLMFLTFFGKMRVDKDISHK 480 F SGF+SKD I+E TS + L L A T+ YS R++ L G R + Sbjct: 384 FLSGFYSKDTIIETLNTSYLNAWALLLTLLATSFTAAYSLRMILLVQTGFPRT-PPTTPI 442 Query: 481 IHESPLVMQIPLFILAIGSIFFGFI 505 +P ++ P+ LA+GSI G + Sbjct: 443 NENTPTIIN-PITRLALGSILAGLL 466 >gnl|CDD|177251 MTH00208, ND5, NADH dehydrogenase subunit 5; Provisional. Length = 628 Score = 351 bits (904), Expect = 2e-97 Identities = 218/636 (34%), Positives = 306/636 (48%), Gaps = 70/636 (11%) Query: 33 IFTSLLMVIGAFLSWYVFYEIGFGHDVQVVKREIFPWIIFDGLDIPWGLRIDTLSSVMFV 92 SLL + AFLS I + + W+ + D + F Sbjct: 57 FSISLLKTL-AFLSLINLL-IWILLGCPNINISLSNWLSNTLFNFSLSFIFDFYFILFFS 114 Query: 93 VVNSISAVVHIYSIGYMHDDPHRPRFFSYLSFFTFAMLVLVSSDNLLQMFFGWEGVGLAS 152 V ++ + +S YM +DP++ FF L F ML+L SS+NL +F GWEGVG S Sbjct: 115 VALFVTWSIIEFSHYYMSNDPNKNAFFRLLIIFLLNMLILTSSNNLFLLFIGWEGVGFLS 174 Query: 153 YLLIGFWSFKESAIKASMKAFVVNRIGDLGLILAISAIIYLFHSVDFDAVFQNASHYWKI 212 +LLI +W+ + A ++++A + NRIGD+G+IL +S + F+S W + Sbjct: 175 FLLISWWTTRNDANSSALQAVIYNRIGDIGIILFLSLSLINFNS-------------WNL 221 Query: 213 GNSVSSGMVSHRSFSFFGIDVHPHDSIAIICLLFFLGAMGKSAQLLLHVWLPDAMEGPTP 272 N + S S+ + I+ L A GKSAQ LH WLP AMEGPTP Sbjct: 222 -NEILSLNNSNSFLINILL-------FGIL-----LAAAGKSAQFGLHPWLPAAMEGPTP 268 Query: 273 VSALIHAATMVTAGVFLVARMSPLFELSPFVLDCITVLGCITAFFAATVGLVQHDIKRVI 332 VSAL+H++TMV AGVFL+ R SPL SP+ L +LG +TA FAA+ + QHDIK++I Sbjct: 269 VSALLHSSTMVVAGVFLLIRTSPLISNSPWFLSLCLILGSLTALFAASTAISQHDIKKII 328 Query: 333 AYSTCSQLGYMFVALGCRAYGASIFHLFTHAFFKALLFLGSGSVIHAVAGEQDMRRMGGL 392 AYST SQLG M VA+G ++FH+ THAFFKA+LFL SGS+IH++ EQD+R+MGGL Sbjct: 329 AYSTTSQLGLMVVAIGLNQPNLALFHICTHAFFKAMLFLCSGSIIHSLNNEQDLRKMGGL 388 Query: 393 YPHLPRTCWMMIVGTLALTGFGIPETSIGFSGFFSKDIILEVAYTSSHFTFVFFLLLFAA 452 LP T +I+G+LAL G +GF+SKD+ILE S L L A Sbjct: 389 SFLLPVTSSCIILGSLALMGTPF------LAGFYSKDLILEAGLASISNLLSIILALIAT 442 Query: 453 FLTSFYSWRLMFLTFFGKMRVDKDISHKIHESPLVMQIPLFILAIGSIFFGFIFHDVFFG 512 LT+ YS+R++F F I E + PL LAIG+I G+ F Sbjct: 443 LLTAVYSFRIIFFCFLNNPSFSP--LSPISEENPNLTNPLLRLAIGTIISGWFF------ 494 Query: 513 SAYSSFWKGALFASSSNNVLERYHEVPLWVEYSSFIAFFVGFFSAFLMYIICPSLPKFLS 572 SN V + S + V A + SL Sbjct: 495 ---------------SNFVFNLPPLTLPLILKS--LPLIVTIIGAAFSFSFLLSLSSNPI 537 Query: 573 EKCRFFYCFLQNAWYFDRIYDCLLVRPIVRLATILWKRVDLSIDK-----YGPGGIVACV 627 F+ FL N W+F I +++ + R ++D+ GP GI Sbjct: 538 NS--NFFSFLSNQWFFVNISHSIIISFSFFTSLFGSTR---TLDRGWSENIGPQGIGNTS 592 Query: 628 RYLSSYSSRLQTGYLDHY-AFSMLIGISILVIVMLL 662 LS QTGY+ Y S L+ + IL + +++ Sbjct: 593 STLSKSYQLTQTGYIKQYLLSSTLLFLLILTLSLII 628 >gnl|CDD|177254 MTH00211, ND5, NADH dehydrogenase subunit 5; Provisional. Length = 597 Score = 348 bits (895), Expect = 3e-96 Identities = 202/644 (31%), Positives = 306/644 (47%), Gaps = 66/644 (10%) Query: 21 FFGRLMGKQFADIFTSLLMVIGAFLSWYVFYEIGFGHDVQVVKREIFPWIIFDGLDIPWG 80 L+ + + + + F+S ++ + WI + Sbjct: 17 LLPLLLPLNNSKLHIKKAVKLSFFISLIPLLIFLDQGLETILTN--WSWINLGLFSLNLS 74 Query: 81 LRIDTLSSVMFVVVNSISAVVHIYSIGYMHDDPHRPRFFSYLSFFTFAMLVLVSSDNLLQ 140 + D S V ++ + +S+ YM +P+ RFF YL F ML+LVS++NL Q Sbjct: 75 FKFDFYSIFFTSVALYVTWSILEFSLWYMSSEPNINRFFKYLLLFLIFMLILVSANNLFQ 134 Query: 141 MFFGWEGVGLASYLLIGFWSFKESAIKASMKAFVVNRIGDLGLILAISAIIYLFHSVDFD 200 +F GWEGVG+ S+LLI +W + A A+++A + NRIGD+GL+L++ ++ +S + Sbjct: 135 LFIGWEGVGIMSFLLISWWYGRSDANTAALQAVIYNRIGDIGLLLSMVWLLLNLNSWEIS 194 Query: 201 AVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSIAIICLLFFLGAMGKSAQLLLH 260 +F + L L AMGKSAQ H Sbjct: 195 QLFILNLDLT------------------------------LFLLGLLLAAMGKSAQFGFH 224 Query: 261 VWLPDAMEGPTPVSALIHAATMVTAGVFLVARMSPLFELSPFVLDCITVLGCITAFFAAT 320 WLP AMEGPTPVSAL+H++TMV AGVFL+ R+SPLF+ + +L + +LG +T F A Sbjct: 225 PWLPSAMEGPTPVSALLHSSTMVVAGVFLLIRLSPLFQNNQLILGAVLLLGALTMLFGAL 284 Query: 321 VGLVQHDIKRVIAYSTCSQLGYMFVALGCRAYGASIFHLFTHAFFKALLFLGSGSVIHAV 380 L Q+DIK+++A+ST SQLG M V LG + H+ THAFFKA+LF+ SGS+IH + Sbjct: 285 CALTQNDIKKIVAFSTTSQLGLMMVTLGLNQPQLAFLHICTHAFFKAMLFMCSGSIIHGL 344 Query: 381 AGEQDMRRMGGLYPHLPRTCWMMIVGTLALTGFGIPETSIGFSGFFSKDIILEVAYTSSH 440 EQD+R+MGGL +LP T + +G+LAL GF SGFFSKD+ILE S Sbjct: 345 NNEQDIRKMGGLSKNLPFTSSCLFLGSLALMGFPF------LSGFFSKDLILESMNGSYL 398 Query: 441 FTFVFFLLLFAAFLTSFYSWRLMFLTFFGKMRVDKDISHKIHESPLVMQIPLFILAIGSI 500 + L L A LT+ YS+RL+FL+ G R I+E+ +++ PL LA+GSI Sbjct: 399 NAWALLLTLLATSLTAAYSFRLIFLSLGGYPRFLSLS--PINENYKLLKNPLKRLALGSI 456 Query: 501 FFGFIFHDVFFGSAYSSFWKGALFASSSNNVLERYHEVPLWVEYSSFIAFFVGFFSAFLM 560 GFI +P ++ + VG + Sbjct: 457 LAGFIITSNLPPEKPEILS------------------LPFLLKLMPLLVTIVGLLLGLEL 498 Query: 561 YIICPSLPKFLSEKCRFFYCFLQNAWYFDRIYDCLLVRPIVRLA-TILWKRVDLS-IDKY 618 K F Y+ I LL + ++ T+ +DL +K Sbjct: 499 -----VNLTHKQLKTSTLS-FSNMLGYYPPIIHRLLPKLSLKWGQTLSTHLMDLGWYEKL 552 Query: 619 GPGGIVACVRYLSSYSSRLQTGYLDHYAFSMLIGISILVIVMLL 662 GP G+ + L + Q G + Y +L+ + +++++ LL Sbjct: 553 GPKGLGVNQKKLIKLVTSPQQGLIKSYLALLLLSLLLILLLFLL 596 >gnl|CDD|177138 MTH00066, ND5, NADH dehydrogenase subunit 5; Provisional. Length = 598 Score = 329 bits (845), Expect = 2e-90 Identities = 170/439 (38%), Positives = 248/439 (56%), Gaps = 38/439 (8%) Query: 67 FPWIIFDGLDIPWGLRIDTLSSVMFVVVNSISAVVHIYSIGYMHDDPHRPRFFSYLSFFT 126 F W+ +I + D S + + ++ + ++I YMH DP RFF YL F Sbjct: 64 FHWMNIFNFNINSSFKFDQYSIIFLPIALFVTWSILEFAIWYMHSDPKINRFFKYLLIFL 123 Query: 127 FAMLVLVSSDNLLQMFFGWEGVGLASYLLIGFWSFKESAIKASMKAFVVNRIGDLGLILA 186 AM++LV+++NL Q+F GWEGVG+ S+LLIG+W + A A+++A + NR+GD+GLIL+ Sbjct: 124 IAMMILVTANNLFQLFIGWEGVGIMSFLLIGWWHARADANTAALQAVLYNRVGDIGLILS 183 Query: 187 ISAIIYLFHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSIAIICLLF 246 ++ + +S + +F +++ S + L Sbjct: 184 MAWLAMNTNSWELQQIF----------------LLNDNST--------------LPLLGL 213 Query: 247 FLGAMGKSAQLLLHVWLPDAMEGPTPVSALIHAATMVTAGVFLVARMSPLFELSPFVLDC 306 L A GKSAQ LH WLP AMEGPTPVSAL+H++TMV AG+FL+ R PL E + L Sbjct: 214 ILAAAGKSAQFGLHPWLPAAMEGPTPVSALLHSSTMVVAGIFLLIRFHPLLENNQTALTI 273 Query: 307 ITVLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVALGCRAYGASIFHLFTHAFFK 366 LG +T F A L Q+DIK+++A+ST SQLG M V +G + FH+ THAFFK Sbjct: 274 CLCLGALTTLFTAACALTQNDIKKIVAFSTSSQLGLMMVTIGLNQPQLAFFHICTHAFFK 333 Query: 367 ALLFLGSGSVIHAVAGEQDMRRMGGLYPHLPRTCWMMIVGTLALTGFGIPETSIGFSGFF 426 A+LFL SGS+IH++ EQD+R+MGGL LP T + +G+LALT G P +GFF Sbjct: 334 AMLFLCSGSIIHSLNDEQDIRKMGGLQKALPITTSCLTIGSLALT--GTPF----LAGFF 387 Query: 427 SKDIILEVAYTSSHFTFVFFLLLFAAFLTSFYSWRLMFLTFFGKMRVDKDISHKIHESPL 486 SKD I+E TS+ ++ L L A T+ YS+R+++ + R I+E+ Sbjct: 388 SKDAIIEAMNTSNLNSWALILTLIATSFTAVYSFRIIYFSSMKFPRSLPLSP--INENNP 445 Query: 487 VMQIPLFILAIGSIFFGFI 505 ++ P+ LA GSI G + Sbjct: 446 LIINPIKRLAWGSIIAGLL 464 >gnl|CDD|177170 MTH00108, ND5, NADH dehydrogenase subunit 5; Provisional. Length = 602 Score = 324 bits (834), Expect = 4e-89 Identities = 174/404 (43%), Positives = 245/404 (60%), Gaps = 41/404 (10%) Query: 104 YSIGYMHDDPHRPRFFSYLSFFTFAMLVLVSSDNLLQMFFGWEGVGLASYLLIGFWSFKE 163 +S+ YMH DP+ RFF YL F ML+LV+++NL Q+F GWEGVG+ S+LLIG+W + Sbjct: 103 FSMWYMHSDPNINRFFKYLLLFLITMLILVTANNLFQLFIGWEGVGIMSFLLIGWWYGRT 162 Query: 164 SAIKASMKAFVVNRIGDLGLILAISAIIYLFHSVDFDAVFQNASHYWKIGNSVSSGMVSH 223 A A+++A + NRIGD+G ILA++ + +S D +F Sbjct: 163 DANTAALQAILYNRIGDIGFILAMAWFLLNLNSWDLQQIF-------------------- 202 Query: 224 RSFSFFGIDVHPHDSIAIICLLFFLGAMGKSAQLLLHVWLPDAMEGPTPVSALIHAATMV 283 + + ++ ++ LL L A GKSAQ LH WLP AMEGPTPVSAL+H++TMV Sbjct: 203 -------MLNPNNSNLPLMGLL--LAATGKSAQFGLHPWLPSAMEGPTPVSALLHSSTMV 253 Query: 284 TAGVFLVARMSPLFELSPFVLDCITVLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYM 343 AGVFL+ R PL E + + LG IT F A L Q+DIK+++A+ST SQLG M Sbjct: 254 VAGVFLLIRFHPLMENNKTIQTLTLCLGAITTLFTAICALTQNDIKKIVAFSTSSQLGLM 313 Query: 344 FVALGCRAYGASIFHLFTHAFFKALLFLGSGSVIHAVAGEQDMRRMGGLYPHLPRTCWMM 403 V +G + H+ THAFFKA+LF+ SGS+IH + EQD+R+MGGL+ LP T + Sbjct: 314 MVTIGINQPHLAFLHICTHAFFKAMLFMCSGSIIHNLNDEQDIRKMGGLFKTLPFTSTAL 373 Query: 404 IVGTLALTGFGIPETSIGF-SGFFSKDIILEVAYTSSHFTFVFFLLLFAAFLTSFYSWRL 462 I+G+LALT G+P F +GF+SKD+I+E A TS + + L A LT+ YS R+ Sbjct: 374 IIGSLALT--GMP-----FLTGFYSKDLIIEAANTSYTNAWALLITLIATSLTAAYSTRI 426 Query: 463 MFLTFFGKMRVDKDISHKIHE-SPLVMQIPLFILAIGSIFFGFI 505 +F G+ R I+ I+E +PL++ P+ L +GSIF GF+ Sbjct: 427 IFFALLGQPRFPPLIT--INENNPLLIN-PIKRLLLGSIFAGFL 467 >gnl|CDD|177195 MTH00137, ND5, NADH dehydrogenase subunit 5; Provisional. Length = 611 Score = 310 bits (798), Expect = 5e-85 Identities = 170/401 (42%), Positives = 241/401 (60%), Gaps = 42/401 (10%) Query: 108 YMHDDPHRPRFFSYLSFFTFAMLVLVSSDNLLQMFFGWEGVGLASYLLIGFWSFKESAIK 167 YMH DP+ RFF YL F AM++LV+++N+ Q+F GWEGVG+ S+LLIG+W + A Sbjct: 111 YMHADPNMNRFFKYLLIFLIAMIILVTANNMFQLFIGWEGVGIMSFLLIGWWYGRADANT 170 Query: 168 ASMKAFVVNRIGDLGLILAISAIIYLFHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFS 227 A+++A + NR+GD+GLILA++ + +S + +F ++S Sbjct: 171 AALQAVIYNRVGDIGLILAMAWMATNLNSWEIQQIF-----------ALSKDF------- 212 Query: 228 FFGIDVHPHDSIAIICLLFFLGAMGKSAQLLLHVWLPDAMEGPTPVSALIHAATMVTAGV 287 D+ ++ ++ L+ L A GKSAQ LH WLP AMEGPTPVSAL+H++TMV AG+ Sbjct: 213 ----DL----TLPLLGLI--LAATGKSAQFGLHPWLPSAMEGPTPVSALLHSSTMVVAGI 262 Query: 288 FLVARMSPLFELSPFVLDCITVLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVAL 347 FL+ R+SPL E + L LG +T F AT L Q+DIK+++A+ST SQLG M V + Sbjct: 263 FLLIRLSPLMENNQTALTTCLCLGALTTLFTATCALTQNDIKKIVAFSTSSQLGLMMVTI 322 Query: 348 GCRAYGASIFHLFTHAFFKALLFLGSGSVIHAVAGEQDMRRMGGLYPHLPRTCWMMIVGT 407 G + H+ THAFFKA+LFL SGS+IH++ EQD+R+MGGL+ P T + +G+ Sbjct: 323 GLNQPQLAFLHICTHAFFKAMLFLCSGSIIHSLNDEQDIRKMGGLHHLTPFTSSCLTIGS 382 Query: 408 LALTG--FGIPETSIGFSGFFSKDIILEVAYTSSHFTFVFFLLLFAAFLTSFYSWRLMFL 465 LALTG F +GFFSKD I+E TS + L L A T+ YS R++F Sbjct: 383 LALTGTPF--------LAGFFSKDAIIEALNTSHLNAWALTLTLIATSFTAVYSLRVVFF 434 Query: 466 TFFGKMRVDKDISHKIHE-SPLVMQIPLFILAIGSIFFGFI 505 G R + +S I+E +P V+ P+ LA GSI G + Sbjct: 435 VSMGHPRFNP-LSP-INENNPAVIN-PIKRLAWGSIIAGLL 472 >gnl|CDD|177220 MTH00165, ND5, NADH dehydrogenase subunit 5; Provisional. Length = 573 Score = 254 bits (651), Expect = 7e-68 Identities = 175/579 (30%), Positives = 276/579 (47%), Gaps = 68/579 (11%) Query: 86 LSSVMFVVVNSISAVVHIYSIGYMHDDPHRPRFFSYLSFFTFAMLVLVSSDNLLQMFFGW 145 +S V+F IS++V YS YM D + RF + F +M++L+ S NL+ + GW Sbjct: 60 MSFVLF-----ISSMVIYYSKSYMSGDKNINRFIYLVLLFVLSMMLLIISPNLISILLGW 114 Query: 146 EGVGLASYLLIGFWSFKESAIKASMKAFVVNRIGDLGLILAISAIIYLFHSVDFDAVFQN 205 +G+GL SY L+ ++ K+S A M + NRIGD+ ++L+I+ Sbjct: 115 DGLGLVSYCLVIYYQNKKSY-NAGMLTALSNRIGDVAILLSIAW---------------- 157 Query: 206 ASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSIA--IICLLFFLGAMGKSAQLLLHVWL 263 M++ S++F +S +I LL L AM KSAQ+ WL Sbjct: 158 --------------MMNFGSWNFIFYLDFMKNSFEMLLIGLLIMLAAMTKSAQIPFSSWL 203 Query: 264 PDAMEGPTPVSALIHAATMVTAGVFLVARMSPLFELSPFVLDCITVLGCITAFFAATVGL 323 P AM PTPVSAL+H++T+VTAGV+L+ R + L S F + ++ +T F A Sbjct: 204 PAAMAAPTPVSALVHSSTLVTAGVYLLIRFNNLL-FSSFFSKFLLLISLLTMFMAGLGAN 262 Query: 324 VQHDIKRVIAYSTCSQLGYMFVALGCRAYGASIFHLFTHAFFKALLFLGSGSVIHAVAGE 383 + D+K++IA ST SQLG M L + FHL THA FKALLFL +GS+IH ++ Sbjct: 263 FEFDLKKIIALSTLSQLGLMMSILSLGFPKLAFFHLLTHALFKALLFLCAGSIIHNMSNS 322 Query: 384 QDMRRMGGLYPHLPRTCWMMIVGTLALTGFGIPETSIGFSGFFSKDIILEVAYTSSHFTF 443 QD+R MGGL +P T + L+L GF SGF+SKD+ILE+ S+ F Sbjct: 323 QDIRFMGGLSNFMPLTSSCFNISNLSLCGFPF------LSGFYSKDLILEMVSMSNLNFF 376 Query: 444 VFFLLLFAAFLTSFYSWRLMFLTFFGKMRVDKDISHKIHESPLVMQIPLFILAIGSIFFG 503 +FFL F+ LT YS+RL++ + G + + + + M + +L SIF G Sbjct: 377 IFFLFFFSTGLTVSYSFRLIYYSMSGDF--NLKSLNNLSDESKFMLKSMILLLFMSIFGG 434 Query: 504 FIFHDVFFGSAYSSFWKGALFASSSNNVLERYHEVPLWVEYSSFIAFFVGFFSAFLMYII 563 + + F Y +P +++ + +G + + + ++ Sbjct: 435 SMLSWLIFPEPYMIC-------------------LPFYLKLLTLFVILLGGWLGYELSLM 475 Query: 564 CPSLPKFLSEKCRFFYCFLQNAWYFDRIYDCLLVRPIVRLATILWKRVDLS-IDKYGPGG 622 S S K FL + W+ + + + L ++ K D + +G G Sbjct: 476 SLS-YNLKSLKNYKLSSFLGSMWFMPFLSTYGISYYPLNLGSLSLKSFDQGWSEYFGGQG 534 Query: 623 IVACVRYLSSYSSRLQTGYLDHYAFSMLIGISILVIVML 661 + ++ LS LQ L Y S L+ + IL+++ L Sbjct: 535 LYNFLKKLSKLIQWLQNNNLKIYLLSFLLWMIILLLLFL 573 >gnl|CDD|177208 MTH00151, ND5, NADH dehydrogenase subunit 5; Provisional. Length = 565 Score = 246 bits (631), Expect = 1e-65 Identities = 145/427 (33%), Positives = 220/427 (51%), Gaps = 44/427 (10%) Query: 88 SVMFV-VVNSISAVVHIYSIGYMHDDPHRPRFFSYLSFFTFAMLVLVSSDNLLQMFFGWE 146 S+ F VV IS V ++S YM +DP RF + F +M +L+ +L + GW+ Sbjct: 56 SLSFSGVVCLISGCVFLFSSSYMSEDPFLKRFMWLVMLFVLSMNLLIFIPSLPSLLLGWD 115 Query: 147 GVGLASYLLIGFWSFKESAIKASMKAFVVNRIGDLGLILAISAIIYLFHSVDFDAVFQNA 206 G+G+ S+ L+ ++ K+S + A M + NRIGD+ ++L+I Sbjct: 116 GLGIVSFALVIYYQNKKS-LSAGMLTALTNRIGDVLILLSI------------------- 155 Query: 207 SHYWKIGNSVSSGMVSHRSFSFFGI-DVHPHDSIAIICLLFFLGAMGKSAQLLLHVWLPD 265 + +V +S + D + LL L AM KSAQ+ WLP Sbjct: 156 -----------ALLVLLGHWSILSMWDFKL---SGWLGLLLVLAAMTKSAQIPFSSWLPA 201 Query: 266 AMEGPTPVSALIHAATMVTAGVFLVARMSPLFELSPFVLDCITVLGCITAFFAATVGLVQ 325 AM PTPVSAL+H++T+VTAGVFL+ R P S + + +T A + Sbjct: 202 AMAAPTPVSALVHSSTLVTAGVFLLIRFFPFLSSSSGFSSFLLFISLLTLLMAGISACYE 261 Query: 326 HDIKRVIAYSTCSQLGYMFVALGCRAYGASIFHLFTHAFFKALLFLGSGSVIHAVAGEQD 385 +D+K++IA ST SQLG M +LG ++FHL+THA FKALLFL +GS+IH+ +G QD Sbjct: 262 NDLKKIIALSTLSQLGVMMFSLGLGMPSLALFHLYTHALFKALLFLCAGSIIHSSSGTQD 321 Query: 386 MRRMGGLYPHLPRTCWMMIVGTLALTGFGIPETSIGFSGFFSKDIILEVAYTSSHFTFVF 445 +R +G L+ LP T + + +L+L G SGF+SKD+ILE + S + Sbjct: 322 IRLLGSLFLSLPLTSGCLNISSLSLCGAP------FLSGFYSKDLILESSLMSPTSLLMV 375 Query: 446 FLLLFAAFLTSFYSWRLMFLTFFGKMRVDKDISHKIHESPLVMQIPLFILAIGSIFFGFI 505 L+ LT+ YS RL F +G M+ S K E V +P+ +L++G++ G + Sbjct: 376 LLMFVGVGLTALYSARLSFCLVWGSMKSSSLSS-KSDEDFYVS-LPMLLLSLGALIGGKL 433 Query: 506 FHDVFFG 512 +F G Sbjct: 434 LQSLFEG 440 >gnl|CDD|177252 MTH00209, ND5, NADH dehydrogenase subunit 5; Provisional. Length = 564 Score = 242 bits (620), Expect = 2e-64 Identities = 150/477 (31%), Positives = 243/477 (50%), Gaps = 43/477 (9%) Query: 37 LLMVIGAFLSWYVFYEIGFGHDVQVVKREIFPWIIFDGLDIPWGLRIDTLSSVMFVVVNS 96 +++ S+ +F + + +++ E+ + + I + L ID +S + VV Sbjct: 7 FSLMLLFLFSFLMFVIFMWFQKIVILEWELLSL---NSMSISFPLIIDKMSLLFSSVVLL 63 Query: 97 ISAVVHIYSIGYMHDDPHRPRFFSYLSFFTFAMLVLVSSDNLLQMFFGWEGVGLASYLLI 156 IS V +S YM + + RF + F +M L+ NL+ + GW+G+GL SYLL+ Sbjct: 64 ISGSVMWFSTSYMAGEKFKKRFILLVLLFILSMNFLIFVPNLITLLLGWDGLGLVSYLLV 123 Query: 157 GFWSFKESAIKASMKAFVVNRIGDLGLILAISAIIYLFHSVDFDAVFQNASHYWKIGNSV 216 ++ +S + A M + NR+GD LIL+I+ Sbjct: 124 IYYQNSKS-LSAGMLTALTNRVGDALLILSIA---------------------------- 154 Query: 217 SSGMVSHRSFSFFGIDVHPHDSIAIICLLFFLGAMGKSAQLLLHVWLPDAMEGPTPVSAL 276 M+ H +++ F ++ + + ++I +L L AM KSAQ+ WLP AM PTPVSAL Sbjct: 155 --WMLMHGNWNIFYLNFN-SNLGSVISVLIVLAAMTKSAQIPFSAWLPAAMAAPTPVSAL 211 Query: 277 IHAATMVTAGVFLVARMSPLFELSPFVLDCITVLGCITAFFAATVGLVQHDIKRVIAYST 336 +H++T+VTAGV+L+ R P SPF + +LG +T A+ V+ D+K++IA ST Sbjct: 212 VHSSTLVTAGVYLLIRFFPSLFSSPFFSMSLLLLGSLTTLMASMSANVESDLKKIIALST 271 Query: 337 CSQLGYMFVALGCRAYGASIFHLFTHAFFKALLFLGSGSVIHAVAGEQDMRRMGGLYPHL 396 SQLG M +LG + FHL THA FKALLF+ +G++IH+ QD+R +G L+ + Sbjct: 272 LSQLGLMMCSLGLNQPELAFFHLITHALFKALLFICAGNIIHSHGHSQDIRMVGNLWYQM 331 Query: 397 PRTCWMMIVGTLALTGFGIPETSIGFSGFFSKDIILEVAYTSSHFTFVFFLLLFAAFLTS 456 P T + + L+L G +GF+SKD+ILE S+ L+ + LT+ Sbjct: 332 PITSICLNIANLSLCGIPF------LAGFYSKDLILESMLESNMPIMTLILMFLSTSLTA 385 Query: 457 FYSWRLMFLTFFGKMRVDKDISHKIHESPLVMQIPLFILAIGSIFFGFIFHDVFFGS 513 YS RL + + +G K ++ ++ L P+ +L +GSI G + V S Sbjct: 386 AYSMRLSYFSLWGPNSS-KSLNSSFDQNKL-NLKPMLVLTLGSITGGSVMSWVMVPS 440 >gnl|CDD|164753 MTH00207, ND5, NADH dehydrogenase subunit 5; Provisional. Length = 572 Score = 206 bits (526), Expect = 2e-53 Identities = 138/419 (32%), Positives = 216/419 (51%), Gaps = 50/419 (11%) Query: 87 SSVMFVVVNSISAVVHIYSIGYMHDDPHRPRFFSYLSFFTFAMLVLVSSDNLLQMFFGWE 146 S+V+F ISA V +++ YM +D RF S + F +M +L+ +L+ + GW+ Sbjct: 64 STVLF-----ISANVLLFAKTYMQEDKFLSRFISLVLLFVLSMNMLIFFPHLMILLLGWD 118 Query: 147 GVGLASYLLIGFWSFKESAIKASMKAFVVNRIGDLGLILAISAIIYLFHSVDFDAVFQNA 206 G+GL S++L+ ++ +S + A M + NRIGD+ L+L+I + N Sbjct: 119 GLGLVSFILVIYYQNPKS-LGAGMITALTNRIGDVMLLLSIGWTL-------------NQ 164 Query: 207 SHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSIAIICLLFFLGAMGKSAQLLLHVWLPDA 266 H W I + + D++ + +++I+ + AM KSAQ+ WLP A Sbjct: 165 GH-WSI-------------TNMWQTDMNNYIALSIM-----IAAMTKSAQMPFSSWLPAA 205 Query: 267 MEGPTPVSALIHAATMVTAGVFLVARMSPLFELSPFVLDCITVL--GCITAFFAATVGLV 324 M PTPVSAL+H++T+VTAGVFL+ R P LS +L +T A + Sbjct: 206 MAAPTPVSALVHSSTLVTAGVFLLIRFYPF--LSSTYWFNPALLLTASLTMLMAGLSAMT 263 Query: 325 QHDIKRVIAYSTCSQLGYMFVALGCRAYGASIFHLFTHAFFKALLFLGSGSVIHAVAGEQ 384 + D+K++IA ST SQLG M +LG ++FHL THA FKALLF+ +GS+IH+ Q Sbjct: 264 ECDMKKIIALSTLSQLGVMMASLGLGMPKLALFHLITHALFKALLFVCAGSLIHSHHHSQ 323 Query: 385 DMRRMGGLYPHLPRTCWMMIVGTLALTGFGIPETSIGFSGFFSKDIILEVAYTSSHFTFV 444 D+R MG L +P T +++ LAL G SGF+SKD+ILE + H + + Sbjct: 324 DLRTMGNLTNQMPLTTSCLLIANLALCGSPF------LSGFYSKDLILESSLFYPHNSLM 377 Query: 445 FFLLLFAAFLTSFYSWRLMFLTFFGKMRVDKDISHKIHESPLVMQIPLFILAIGSIFFG 503 ++ A LT+ YS R + H + + + P+ +L +G+I G Sbjct: 378 ILMIFLATALTAAYSTRFTLAVLWSP--NSSSPYHHLEDEDKSLTTPMLLLTLGAITSG 434 >gnl|CDD|109421 pfam00361, Oxidored_q1, NADH-Ubiquinone/plastoquinone (complex I), various chains. This family is part of complex I which catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane. Length = 270 Score = 198 bits (506), Expect = 3e-51 Identities = 107/304 (35%), Positives = 160/304 (52%), Gaps = 37/304 (12%) Query: 135 SDNLLQMFFGWEGVGLASYLLIGFWSFKESAIKASMKAFVVNRIGDLGLILAISAIIYLF 194 S+NLL + GWE +GL SYLLIGFW + +++AS+K F+ +G L L+ I I L Sbjct: 1 SNNLLLFYLGWELLGLPSYLLIGFWGYSPRSLEASLKYFLYTALGSLFLLFGILYIYGLT 60 Query: 195 HSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSIAIICLLFFLGAMGKS 254 S+ F +F + + ++ LL + + KS Sbjct: 61 GSLSFTLLFLFGLNSN---------------------------GLLLLSLLLLVAFLVKS 93 Query: 255 AQLLLHVWLPDAMEGPTPVSALIHAATMVTAGVFLVARMSPLFELSPFVLDCITVLGCIT 314 Q H WLPDA EGP PVS+LI A T+ AG++L+ R+S LF S + + +LG ++ Sbjct: 94 PQFPFHFWLPDAHEGPPPVSSLILATTLKKAGLYLLLRLSNLFSSSNLISYILLILGILS 153 Query: 315 AFFAATVGLVQHDIKRVIAYSTCSQLGY-MFVALGCRAYG--ASIFHLFTHAFFKALLFL 371 + L Q D+K++IAYS+ S +G+ M L +YG +I HL +H FF ALLFL Sbjct: 154 MLLGSLGALNQTDLKKLIAYSSISHMGFVMMGILSLGSYGIIGAIIHLISHGFFSALLFL 213 Query: 372 GSGSVIHAVAGEQDMRRMGGLYPHLPRTCWMMIVGTLALTGFGIPETSIGFSGFFSKDII 431 +G +IH G +D+R GGL+ +P ++++ L+L G+P GF SK +I Sbjct: 214 LAGLIIHRS-GTRDLRNYGGLFNSMPILALLLLLLLLSLM--GLP----PLLGFISKFLI 266 Query: 432 LEVA 435 LE Sbjct: 267 LESL 270 >gnl|CDD|39867 KOG4668, KOG4668, KOG4668, NADH dehydrogenase subunits 2, 5, and related proteins [Energy production and conversion]. Length = 355 Score = 183 bits (465), Expect = 1e-46 Identities = 142/398 (35%), Positives = 201/398 (50%), Gaps = 50/398 (12%) Query: 113 PHRPRFFSYLSFFTFAMLVLVSSDNLLQMFFGWEGVGLASYLLIGFWSFKESAIKASMKA 172 + F Y+ T ML+LV+S+NL+ MF GWEGVGL SYLL+GF + +A+MK Sbjct: 1 MNINEFIFYILIPTAGMLILVTSNNLITMFVGWEGVGLCSYLLLGFKK-NPRSTEAAMKY 59 Query: 173 FVVNRIGDLGLILAISAIIYLFHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGID 232 F+ NR G L+ IS + + +IGN+ S Sbjct: 60 FLTNRAGSFILLFGISGLY-----------LSSGLFGNEIGNNEYS-------------- 94 Query: 233 VHPHDSIAIICLLFFLGAMGKSAQLLLHVWLPDAMEGPTPVSALIHAA-TMVTAGVFLVA 291 SI +I LL G GKSAQ H WLPDAMEGPTPVSA + ++ T+V AG+ L Sbjct: 95 -----SITLIILLIASG--GKSAQAPFHFWLPDAMEGPTPVSATLSSSKTLVIAGLALAV 147 Query: 292 RMSPLFELSPFVLDCITVLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVALGCRA 351 R PL SP + +LG ++ F A L Q DIK+++A+S+ QLGYM +L Sbjct: 148 RSIPLLCSSPLIQQLKLILGILSMLFGALCALTQTDIKKILAFSSIGQLGYMMFSLKVGM 207 Query: 352 YGASIFHLFTHAFFKALLFLGSGSVIHAVAGEQDMRRMGGLYPHLPRTCWMMIVGTLALT 411 +I HL THA FKALLF+ GS+IH + EQD+R M GL P + +G L+L Sbjct: 208 SNNAILHLATHALFKALLFMCYGSIIHYLNLEQDIRLMSGLLNLPPLLKLSLFIGLLSLG 267 Query: 412 GFGIPETSIGFSGFFSKDIILEVAYTSSHFTFVFFLLLFAAFLTSFYSWRLMFLTFFGKM 471 G +GF+SKD I+E A+ ++ + +LL + LT +YS+R + F+ Sbjct: 268 GL------PFLAGFYSKDYIIETAFQNNLYALAPTILLTSVLLTLYYSFRTGRMFFYTSN 321 Query: 472 RVDKDISHKIHESPLV----MQIPLFILAIGSIFFGFI 505 SPL + + + +I S+ F+ Sbjct: 322 NW------INKMSPLRLMNNLSLMMTFFSISSLIPNFL 353 >gnl|CDD|30996 COG0651, HyfB, Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion / Inorganic ion transport and metabolism]. Length = 504 Score = 172 bits (437), Expect = 3e-43 Identities = 134/541 (24%), Positives = 225/541 (41%), Gaps = 51/541 (9%) Query: 1 MAMIYEVIVFLPLIGAVFSGFFGRLMGKQFADIFTSLLMVIGAFLSWYVFYEIGFGHDVQ 60 M + + + LPL+ A F L + L + LS F E+G Sbjct: 1 MNNLLLLPIILPLLAAALLLLFLGLRRLKAKRFLALLGALGLLLLSILGFLEVG------ 54 Query: 61 VVKREIFPWIIFDGLDIPWGLRIDTLSSVMFVVVNSISAVVHIYSIGYMHDDPHRPRFFS 120 I L D LS++ +++ + + +YSIGYM + R ++ Sbjct: 55 --GPVGGLGGWLAPFGI--VLAADPLSAIFLLIIALVGLLASLYSIGYMRHEKERAYYYF 110 Query: 121 YLSFFTFAMLVLVSSDNLLQMFFGWEGVGLASYLLIGFWSFKESAIKASMKAFVVNRIGD 180 L ML + +L ++ +E + L+SY L+ + + A K ++ IG Sbjct: 111 LLLLLLAGMLGAFLTGDLFNLYVFFEIMTLSSYFLVAHYGGRRRQASAGFKYLILGHIGT 170 Query: 181 LGLILAISAIIYLFHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSIA 240 L L++ + + +++F + S G Sbjct: 171 LLLLIGVGLLYAATGTLNFADIALKLSSELDPG------------------------LGI 206 Query: 241 IICLLFFLGAMGKSAQLLLHVWLPDAM-EGPTPVSALIHAATMVTAGVFLVAR----MSP 295 LL +G K+ LH WLPDA E P+PVSAL+ +V GV+ + R + P Sbjct: 207 AAFLLLLIGFGVKAGLFPLHFWLPDAHSEAPSPVSALLS-GVLVKVGVYGILRILYLVFP 265 Query: 296 LFELSPFVLDCITVLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVALGC---RAY 352 L + + + LG +T F L+Q DIKR++AYST SQ+GY+ + LG Sbjct: 266 LLGGAYLWGNLLIALGILTILFGVLYALLQKDIKRLLAYSTVSQMGYILLGLGIGTPLGL 325 Query: 353 GASIFHLFTHAFFKALLFLGSGSVIHAVAGEQDMRRMGGLYPHLPRTCWMMIVGTLALTG 412 +IFHL HA KALLFLG+G+V++ G +D+ ++GGL +P T ++G L+L G Sbjct: 326 AGAIFHLLNHALVKALLFLGAGAVLYR-TGTRDLEKLGGLAKRMPLTAVAFLIGALSLAG 384 Query: 413 FGIPETSIGFSGFFSKDIILEVAYTSSHFTFVFFLLLFAAFLTSFYSWRLMFLTFFGKM- 471 F+GF SK ++++ + ++ + +L L S ++ + F Sbjct: 385 LPP------FNGFISKFLLIQALFKANALLAILIILAALILLASLATFISLARIFMLLFF 438 Query: 472 RVDKDISHKIHESPLVMQIPLFILAIGSIFFGFIFHDVFFGSAYSSFWKGALFASSSNNV 531 I + E PL+M P+ ILAI + G + ++ + + Sbjct: 439 GQGAPIERDVPEVPLLMLAPMVILAILCLVLGLAPDPLLPKILQAAAAILLVPGLYIALI 498 Query: 532 L 532 L Sbjct: 499 L 499 >gnl|CDD|177158 MTH00095, ND5, NADH dehydrogenase subunit 5; Provisional. Length = 527 Score = 159 bits (405), Expect = 2e-39 Identities = 123/420 (29%), Positives = 203/420 (48%), Gaps = 53/420 (12%) Query: 86 LSSVMF-VVVNSISAVVHIYSIGYMHDDPHRPRFFSYLSFFTFAMLVLVSSDNLLQMFFG 144 +S++F +++ ++ V ++S YM+ + + F+ L F +M +L S+++ M Sbjct: 45 FNSLLFSLILLLVTLSVLVFSSYYMNGELNFNYFYFVLLIFVGSMFMLNFSNSVFTMLLS 104 Query: 145 WEGVGLASYLLIGFWSFKESAIKASMKAFVVNRIGDLGLILAISAIIYLFHSVDFDAVFQ 204 W+ +G++S+ L+ F++ +S +M + NRIGD + L S I+ Sbjct: 105 WDLLGISSFFLVLFYNNWDS-NSGAMNTALTNRIGDFFIFLFFSGFIF------------ 151 Query: 205 NASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSIAIICLLFFLGAMGKSAQLLLHVWLP 264 S S FS I L+ L + KSAQ WLP Sbjct: 152 -----------SSYYFFSFSFFSSSMI------------LMLLLTSFTKSAQFPFSSWLP 188 Query: 265 DAMEGPTPVSALIHAATMVTAGVFLVARMSPLFELSPFVLDCITVLGCITAFFAATVGLV 324 AM PTPVS+L+H++T+VTAG+ L+ S L L+ V+ + ++G T FF++ LV Sbjct: 189 KAMSAPTPVSSLVHSSTLVTAGLILLMNFSYLI-LNMNVMKIMLLIGLFTMFFSSLSALV 247 Query: 325 QHDIKRVIAYSTCSQLGYMFVALGCRAYGASIFHLFTHAFFKALLFLGSGSVIHAVAGEQ 384 + D+K+V+A ST SQ+G+ + G S HL +HA FK+ LF+ G +IH+ G+Q Sbjct: 248 EEDMKKVVALSTLSQMGFSMLTFGSGLSFVSFIHLLSHALFKSCLFMQVGYLIHSNFGQQ 307 Query: 385 DMRRMG--GLYPHLPRTCWMMIVGTLALTGFGIPETSIGFSGFFSKDIILEVAYTSSHFT 442 D R G P + ++V L G + SG SK++ILE+ + +++ Sbjct: 308 DGRNYSNNGNLPMFIQL--QLLVTLFCLCGL------MFTSGMVSKELILELFFFNNYMI 359 Query: 443 FVFFLLLFAAFLTSFYSWRLMFLTFFGKMRVDKDISHKIHESPLVMQIPLFILAIGSIFF 502 F + F+ FLT YS+RL F +V S S ++M +L S+FF Sbjct: 360 FFSLMFFFSVFLTFGYSYRLWKSFFLSFSKVVNVYS-----SSVLMNFLSLMLVFFSVFF 414 >gnl|CDD|31212 COG1008, NuoM, NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]. Length = 497 Score = 127 bits (320), Expect = 1e-29 Identities = 126/510 (24%), Positives = 220/510 (43%), Gaps = 51/510 (10%) Query: 1 MAMIYEVIVFLPLIGAVFSGFFGRLMGKQFADIFTSLLMVIGAFLSWYVFYEIGFGHDVQ 60 + +++FLPLIGA+ +FA ++ + LS Y+F Sbjct: 2 SFPLLSLLIFLPLIGALLILLIPD--NGKFARWIALVVSLATLLLSLYLFAGFDISSP-G 58 Query: 61 VVKREIFPWIIFDGLDIPWGLRIDTLSSVMFVVVNSISAVVHIYSIGYMHDDPHRPRFFS 120 E +PWI L + + L +D +S ++ V++ ++ ++ I + + RP+ F Sbjct: 59 FQFVESYPWI--PQLGLSYHLGVDGIS-LLLVLLTALLTLLAILA--SWREIEKRPKLFY 113 Query: 121 YLSFFTFAMLVLV-SSDNLLQMFFGWEGVGLASYLLIGFWSFKESAIKASMKAFVVNRIG 179 L ++ V ++ +LL + WE + + Y LIG W K I A+ K F+ +G Sbjct: 114 ALFLLLEGGVIGVFAALDLLLFYVFWELMLIPMYFLIGIWGGKRR-IYAATKFFLYTLLG 172 Query: 180 DLGLILAISAIIYLFHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSI 239 L ++LA + +L S FD + A ++ G+ ++ F G Sbjct: 173 SLFMLLAFLYLYFLTGSPTFDILELLA-------LNLPLGV---QTLLFLG--------- 213 Query: 240 AIICLLFFLGAMGKSAQLLLHVWLPDA-MEGPTPVSALIHAATMVTAGVFLVARMSPLF- 297 F + K LH WLPDA +E PT S ++ + G L+ PLF Sbjct: 214 ------FLIAFAVKMPLFPLHTWLPDAHVEAPTAGSVILAGILLKMGGYGLLRFSLPLFP 267 Query: 298 ELSPFVLDCITVLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYM---FVALGCRAYGA 354 + S + + LG I+ + A V Q DIKR+IAYS+ S +G++ + Sbjct: 268 DASAYFAPLLVALGVISIIYGALVAFAQTDIKRLIAYSSISHMGFVTLGIFSFNELGVSG 327 Query: 355 SIFHLFTHAFFKALLFLGSGSVIHAVAGEQDMRRMGGLYPHLPRTCWMMIVGTLALTGFG 414 ++F + +H A LFL G V++ +D+ +GGL +P+ + ++ +A G Sbjct: 328 AVFQMLSHGLISAALFLLVG-VLYERTHTRDIADLGGLANKMPKLAALFMLFAMA--SLG 384 Query: 415 IPETSIGFSGFFSKDIILEVAYTSSHFTFVFFLLLFAAFLTSFYSWRLMFLTFFGKMRVD 474 +P G SGF + +IL ++ F +V FL F LT+ Y + FFG + Sbjct: 385 LP----GTSGFVGEFLILLGSF--QVFPWVAFLAAFGLILTAVYMLWMYQRVFFG--PLK 436 Query: 475 KDISHKIHESPLVMQIPLFILAIGSIFFGF 504 + ++ + L L + +F G Sbjct: 437 EGSLAELPDLNGREVFILAPLVVLILFLGV 466 >gnl|CDD|31211 COG1007, NuoN, NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]. Length = 475 Score = 109 bits (274), Expect = 2e-24 Identities = 94/445 (21%), Positives = 183/445 (41%), Gaps = 44/445 (9%) Query: 81 LRIDTLSSVMFVVVNSISAVVHIYSIGYMHD-DPHRPRFFSYLSFFTFAMLVLVSSDNLL 139 +D L+ +M +VV S I S+ Y+ + F++ L F T M+V+ S++NLL Sbjct: 64 FIVDALALLMKIVVLLASLAALILSLPYLERAGTFKGEFYALLLFATLGMIVMASANNLL 123 Query: 140 QMFFGWEGVGLASYLLIGFWSFKESAIKASMKAFVVNRIGDLGLILAISAIIYLFHSVDF 199 +F G E + LA Y+L + + +A++K FV+ + L+ I+ + S+ Sbjct: 124 LLFIGLELLSLALYVLAALRRDSKRSSEAALKYFVLGALSSAFLLYGIALVYGATGSLSL 183 Query: 200 DAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSIAIICLLFFLGAMG-KSAQLL 258 + ++ ++ L+F + +G K + + Sbjct: 184 SGIAAY-------------------------LNGGGEPLGLLLGLVFIIAGLGFKLSAVP 218 Query: 259 LHVWLPDAMEG-PTPVSALIHAATMVTAGVFLVARMSPLFE-LSPFVLDCITVLGCITAF 316 H+W PD EG PTPV+A + A + A L+ F +P ++ + Sbjct: 219 FHMWTPDVYEGAPTPVTAFLSTAPKIAAFAVLLRIFVTAFGPDAPDWYLIFAIIAVASML 278 Query: 317 FAATVGLVQHDIKRVIAYSTCSQLGYM---FVALGCRAYGASIFHLFTHAFFKALLFLGS 373 L Q ++KR++AYS+ + +GY+ A+ Y A +F+L +AF F Sbjct: 279 VGNFAALSQTNVKRLLAYSSIAHMGYLLVGLAAVTVGGYAAVLFYLLAYAFMSLGAFGVV 338 Query: 374 GSVIHAVAGEQDMRRMGGLYPHLPRTCWMMIVGTLALTGFGIPETSIGFSGFFSKDIILE 433 + G + + + GL P ++ + L+L GIP +GF+ K + Sbjct: 339 ALLSSKEGGAESISDLAGLSKRHPLLAALLTILMLSLA--GIPPL----AGFWGKFYVFL 392 Query: 434 VAYTSSHFTFVFFLLLFAAFLTSFYSWRLMFLTFFGKMRVDKDISHKIHESPLVMQIPLF 493 A + + +L +A ++++Y R++ +F + + + + ++ L Sbjct: 393 AAVQAGLWWLAVIAVLNSA-ISAYYYLRVVKAMYFE----EPEGAFRDAPQYTALKAVLL 447 Query: 494 ILAIGSIFFGFIFHDVFFGSAYSSF 518 + AI + G I A + Sbjct: 448 VAAILVLVLG-ILPQPVIDLAAQAA 471 >gnl|CDD|177135 MTH00063, ND5, NADH dehydrogenase subunit 5; Provisional. Length = 522 Score = 96.5 bits (241), Expect = 2e-20 Identities = 116/490 (23%), Positives = 193/490 (39%), Gaps = 76/490 (15%) Query: 84 DTLSSVMFVVVNSISAVVHIYSIGYMHDDPHRPRFFSYLSFFTFAMLVLVSSDNLLQMFF 143 D ++ + +++ +Y+ Y + F M +LV + + L Sbjct: 44 DYVTFGVLLMLLICFYYSLLYTFHYFGGSYASFLLNKLIVLFVLVMGILVLTGDFLSTLI 103 Query: 144 GWEGVGLASYLLIGFWSFKESAIKASMKAFVVNRIGDLGLILAISAIIYLFHSVDFDAVF 203 WE +G+ S+ LI F+ S +AS+ V +R GD+ L L I Sbjct: 104 FWEYLGVVSFFLILFYDNFLSL-RASVVTLVSSRFGDVCLFLLIG--------------- 147 Query: 204 QNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSIAIICLLFFLGAMGKSAQLLLHVWL 263 G+ + CL FFL KSA WL Sbjct: 148 ----LSCWGGSGSF-----------------------LCCLFFFLIVFTKSASFPFISWL 180 Query: 264 PDAMEGPTPVSALIHAATMVTAGVFLVARMSPLFELSPFVLDCITVLGCITAFFAATVGL 323 +AM PTPVS+L+H++T+V AGV+ V R L S + +VL +T F L Sbjct: 181 LEAMRAPTPVSSLVHSSTLVAAGVWFVMRYDYLLGFSWLSI-FFSVLLLLTIFITGVSSL 239 Query: 324 VQHDIKRVIAYSTCSQLGYMFVALGCRAYGASIFHLFTHAFFKALLFLGSGSVIHAVAGE 383 D+K+++A STC+ + + + L S+F L +H K LLF+ G V+ G Sbjct: 240 FFSDLKKIVALSTCNNISWCVLYLIYGDVILSLFQLVSHGVSKCLLFMLVGDVMSGSGGS 299 Query: 384 QDMRRMGGLYPHLPRTCWMMIVGTLALTGF-GIPETSIGFSG-FFSKDIILEVAYTSSHF 441 Q +Y + W + L + G G+P F G FFSK +L + Sbjct: 300 QS---SNCVYSSILYGSWNLFYLFLLVLGLSGVP-----FIGVFFSKHFLLSSFSSVVFN 351 Query: 442 TFVFFLLLFAAFLTSFYSWRLMFLTFFGKMRVDKDISHKIHESPLVMQIPLFI------- 494 + +++ FL+ YS+RL + F K + + S L++ + LFI Sbjct: 352 VSLLLVVILCVFLSYLYSFRLCLILFGVKSSLSSGVRFLFFNSGLMVFLWLFINYYVFLL 411 Query: 495 -------------LAIGSIFFGFIFHDVFFGSAYSSFWKGALFASSSNNVLERYHEVPLW 541 + + G + +F+ S S W +LF +N++E ++E+ Sbjct: 412 LDEVVYLGVFISLVLLLVQLLGLLVGVLFYDSNLFSNWSSSLFG--CDNLVELFYELFYS 469 Query: 542 VEYSSFIAFF 551 + + FF Sbjct: 470 ILDLVSLFFF 479 >gnl|CDD|109709 pfam00662, Oxidored_q1_N, NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus. This sub-family represents an amino terminal extension of pfam00361. Only NADH-Ubiquinone chain 5 and eubacterial chain L are in this family. This sub-family is part of complex I which catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane. Length = 62 Score = 68.0 bits (167), Expect = 8e-12 Identities = 27/59 (45%), Positives = 37/59 (62%) Query: 66 IFPWIIFDGLDIPWGLRIDTLSSVMFVVVNSISAVVHIYSIGYMHDDPHRPRFFSYLSF 124 ++ WI +I WG D+LS + VV ++S +VH+YSI YM DP+ RFFSYLS Sbjct: 4 LWNWINSGSFNINWGFLFDSLSLIFLSVVLTVSWLVHLYSIWYMSHDPNINRFFSYLSL 62 >gnl|CDD|40042 KOG4845, KOG4845, KOG4845, NADH dehydrogenase, subunit 4 [Energy production and conversion]. Length = 452 Score = 65.7 bits (160), Expect = 4e-11 Identities = 86/401 (21%), Positives = 152/401 (37%), Gaps = 44/401 (10%) Query: 76 DIPWGLRIDTLSSVMFVVVNSISAVVHIYSIGYMHDDPHRPRFFSYLSFFTFAMLVLVSS 135 I L ID LS + ++ I + I ++ ++ F F +++ SS Sbjct: 51 WISLFLGIDGLSFGLLILTTFIIPL--IILASEKGNNNYKKLFLILSLILVFLLIITFSS 108 Query: 136 DNLLQMFFGWEGVGLASYLLIGFWSFKESAIKASMKAFVVNRIGDLGLILAISAIIYLFH 195 +LL + +E + + +LI W + + A+ +G L L++ I I Sbjct: 109 SDLLMFYIFFELSLIPTLVLILGWGSQPERLNAAYYFLFYTLLGSLPLLIGILYINNYGG 168 Query: 196 SVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSIAIICLLFFLGAMGKSA 255 S++F + N S V L K Sbjct: 169 SLNF-----------LLLNLTSYPFVISILMYI----------------ALLLAFAVKMP 201 Query: 256 QLLLHVWLPDA-MEGPTPVSALIHAATMVTAGVFLVARMSPLFELSPFVLD-CITVLGCI 313 LH+WLP A +E PT S L+ A ++ G + R++ + + V V+ I Sbjct: 202 IYPLHLWLPKAHVEAPTSGSMLL-AGILLKLGTYGFLRINMILPSATLVHSPVWLVISLI 260 Query: 314 TAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVALGCRAY---GASIFHLFTHAFFKALLF 370 + ++ L Q D+K++IAYS+ S +G++ + + SI + H + LF Sbjct: 261 GIIYTSSTCLRQTDLKKLIAYSSVSHMGFVLIGILSITMWGLIGSILLMIAHGLTSSALF 320 Query: 371 LGSGSVIHAVAGEQDMRRMGGLYPHLPRTCWMMIVGTLALTGFGIPETSIGFSGFFSKDI 430 +G G + M MGGL+ +P + +LA S F + Sbjct: 321 CLAGVSYDRS-GSRMMYFMGGLFSSMPIMGTWFFLLSLANLA------LPPTSSFLGEFS 373 Query: 431 ILEVAYTSSHFTFVFFLLLFAAFLTSFYSWRLMFLTFFGKM 471 +L ++ S +F L+ LT+ YS L + GK+ Sbjct: 374 VLVGIFSWS--KIMFVLIAIGMILTAAYSLYLYTSSQMGKL 412 >gnl|CDD|164750 MTH00204, ND4, NADH dehydrogenase subunit 4; Provisional. Length = 485 Score = 51.6 bits (124), Expect = 8e-07 Identities = 111/521 (21%), Positives = 197/521 (37%), Gaps = 63/521 (12%) Query: 3 MIYEVIVFLPLIGAVFSGFFGRLMGKQFADI--FTSLLMVIGAFLSWYVFYEIGFGHDVQ 60 +I + +G + R + SL ++ + W F G Q Sbjct: 1 NGLSLIFLILFMGIINVMGVPRENSVKLKKRALEWSLAILFSTLVLWGAFDGEG-----Q 55 Query: 61 VVKREIFPWIIFDGLDIPWG---LRIDTLSSVMFVV---VNSISAVVHIYSIGYMHDDPH 114 + WII L+ WG +D +S ++ + I ++ SI ++ + Sbjct: 56 FQFINLIEWIISPTLNFQWGPLVFAVDGVSLFFILLTTLLIPICILISWKSIKFLFKE-- 113 Query: 115 RPRFFSYLSFFTFAMLVLV-SSDNLLQMFFGWEGVGLASYLLIGFWSFKESAIKASMKAF 173 F F +L+ V S +LL + +EG+ + +LLIG W +E ++AS F Sbjct: 114 ----FLLCLLFLEVLLIGVFSVLDLLLFYILFEGILIPMFLLIGIWGSREEKVRASYYFF 169 Query: 174 VVNRIGDLGLILAISAIIYLFHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDV 233 G + ++L I + + + D+ I + Sbjct: 170 FYTFAGSVFMLLGIFQLYSITGTTDY--------------------------QILLNIKL 203 Query: 234 HPHDSIAIICLLFFLGAMGKSAQLLLHVWLPDA-MEGPTPVSALIHAATMVTAGVFLVAR 292 P + + FFL K Q+ H+WLP A +E P S ++ A ++ G + R Sbjct: 204 -PLSIQKWLLVGFFLSLAVKIPQIPFHIWLPQAHVEAPVAGSVIL-AGILLKLGGYGFLR 261 Query: 293 MS-PLF-ELSPFVLDCITVLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVALGCR 350 S PLF S + I +L I + + Q D KR+IAYS+ + +G + + L Sbjct: 262 FSWPLFPAASEYFAPLIVMLSVIAVIYGSLTTCRQVDFKRLIAYSSVAHMGLVPLGLFTH 321 Query: 351 AYG---ASIFHLFTHAFFKALLFLGSGSVIHAVAGEQDMRRMGGLYPHLPRTCWMMIVGT 407 A++F + H F + LF+ + ++ + ++ GL +P +M+V Sbjct: 322 TIEGLVAAVFLMLAHGFVSSALFIAV-TFLYERHHTRLIKYYRGLTLTMPLFVIIMLV-- 378 Query: 408 LALTGFGIPETSIGFSGFFSKDIILEVAYTSSHFTFVFFLLLFAAFLTSFYSWRLMFLTF 467 L+L G P + FFS ++ Y+ + L+ ++ YS L Sbjct: 379 LSLANMGFPLSCNFVGEFFS--LLAAFEYS----LGLGVLVTSGMVWSAAYSLYLYNRIS 432 Query: 468 FGKMRVDKDISHKIHESPLVMQIPLFILAIGSIFFGFIFHD 508 FG S ++ L+ +PL I FI D Sbjct: 433 FGGGSNYLLFSRDLNRRELLAILPLIIAIFLLGIVPFIIID 473 >gnl|CDD|176990 CHL00049, ndhB, NADH dehydrogenase subunit 2. Length = 494 Score = 51.2 bits (123), Expect = 9e-07 Identities = 87/407 (21%), Positives = 166/407 (40%), Gaps = 57/407 (14%) Query: 118 FFSYLSFFTFAMLVLVSSDNLLQMFFGWEGVGLASYLLIGFWSFKESAIKASMKAFVVNR 177 F ++ T + L +++L+ +F E + L SYLL G+ + +A+MK Sbjct: 113 FLLFVLTATLGGMFLCGANDLITIFVALECLSLCSYLLSGYTKKDVRSNEATMKYL---- 168 Query: 178 IGDLGLILAISAIIYLFHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHD 237 L+ S+ I ++ + +I N G+++ + ++ GI Sbjct: 169 -----LMGGASSSILVYGFSWLYGLSGGEIELQEIVN----GLINTQMYNSPGI------ 213 Query: 238 SIAIICLLFFLGAMGKSAQLLLHVWLPDAMEG-PTPVSALIHAATMVTAGVFLVARMSPL 296 SIA+I + +G K + H W PD EG PTPV A + + V A L R+ + Sbjct: 214 SIALIFITVGIGF--KLSLAPFHQWTPDVYEGSPTPVVAFLSVTSKV-AASALATRIFDI 270 Query: 297 FELSPFVLD----CITVLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVALGCRAY 352 F + + +L ++ + + Q +KR++AYS+ Q+GY+ + + Sbjct: 271 --PFYFSSNEWHLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDS 328 Query: 353 GASIFHLFTHAFFKALLFLGSGSVIHAV---AGEQDMRRMGGLYPHLPRTCWMMIVGTLA 409 + T+ F + LG+ + I G ++R GLY P + + L+ Sbjct: 329 NDGYASMITYMLFYIFMNLGTFACIVLFGLRTGTDNIRDYAGLYTKDPFLALSLALCLLS 388 Query: 410 LTGFGIPETSIGFSGFFSKDIILEVAYTSSHFTFVFFLLLFAAFLTS----FYSWRLMFL 465 L GIP +GFF K + + + + L+ LTS +Y +++ L Sbjct: 389 LG--GIPP----LAGFFGKLYLFWCGWQAG-----LYFLVSIGLLTSVISIYYYLKIIKL 437 Query: 466 TFFGKMRVDKDISHKIHE-------SPLVMQIPLFILAIGSIFFGFI 505 G+ +++I+ + S +++ + + I S G Sbjct: 438 LMTGR---NQEITPYVRNYRRSPLRSNNSIELSMIVCVIASTIPGIS 481 >gnl|CDD|177243 MTH00196, ND2, NADH dehydrogenase subunit 2; Provisional. Length = 365 Score = 50.8 bits (122), Expect = 1e-06 Identities = 92/405 (22%), Positives = 164/405 (40%), Gaps = 61/405 (15%) Query: 124 FFTFAMLVLVSSDNLLQMFFGWEGVGLASYLLIGFWSFKESAIKASMKAFVVNRIGDLGL 183 +L L+SS N L ++ E L+ ++LI + +A +K FV+ + GL Sbjct: 1 MVALGILCLISSSNWLSVYLAIELQTLSLFILIAQNRGSGYSAEAGLKYFVLGALSS-GL 59 Query: 184 ILAISAIIY-LFHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSIAII 242 L A++ + + +V + SF + V + I+ Sbjct: 60 FLFGCALLCGTTGGLHLSYI----------------NLVLNSGQSFSSVSVPIGYLLIIV 103 Query: 243 CLLFFLGAMGKSAQLLLHVWLPDAMEG-PTPVSALIHAATMVTAGVFLVARMSPLFELSP 301 LLF L H+W PD EG PT +AL+ A + G+F S L + Sbjct: 104 ALLFKLSVAP------FHMWAPDVYEGAPTKTTALL--AIVPKLGIF-----SILVSIGL 150 Query: 302 FVLDCITVLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVALGCRAY---GASIFH 358 ++ + + G + F A L Q IKR++AYS +G++ + ++ AS+ + Sbjct: 151 -NVNILLIGGLFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIGSFESIQASLVY 209 Query: 359 LFTHAFFKALLFLGSGSVIHAVAGEQDMR-RMGGLYPHLPRTCWMMIVGTLALTGF---G 414 LF + +F S+I A+ +++ GL LP ++ TLALT G Sbjct: 210 LFIYIIMSICVF----SIILALNVYKNLIIEFSGLSRRLP-----ILAITLALTFLSIAG 260 Query: 415 IPETSIGFSGFFSKDIILEVAYTSSHFTFVFFLLLFAAFLTSFYSWRLMFLTFFGKMRVD 474 IP GF K +IL ++ +F L +F + + Y R++ + FF Sbjct: 261 IPP----LVGFLGKWLILLSGVVYQYY-LIFLLAVFCSVIAGVYYVRIVKILFFQA---- 311 Query: 475 KDISHKIHESPLVMQIPLFILAIGSIFFGFIFHDVFFGSAYSSFW 519 + + S +++ I ++ GF + + F +F+ Sbjct: 312 ---NSFLLISTKILKKENKINLRKALLIGFSLYLILFTILSPNFF 353 >gnl|CDD|177262 MTH00226, ND4, NADH dehydrogenase subunit 4; Provisional. Length = 505 Score = 49.2 bits (117), Expect = 3e-06 Identities = 55/250 (22%), Positives = 100/250 (40%), Gaps = 30/250 (12%) Query: 127 FAMLVLVSSDNLLQMFFGWEGVGLASYLLIGFWSFKESAIKASMKAFVVNRIGDLGLILA 186 F + + S ++ + +EGV + YL++G W +E ++A+ F IG + ++L Sbjct: 142 FLLYAVFSVLDIFMFYILFEGVLIPMYLILGIWGSREEKMQAAYYFFFYTLIGSVLMLLC 201 Query: 187 ISAIIYLFHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSIAIICLLF 246 + ++ + + D+ + + V S F L Sbjct: 202 LFSLYNIHGTTDYLTLASC--------SHVVSEQTQKWIF-----------------LGI 236 Query: 247 FLGAMGKSAQLLLHVWLPDA-MEGPTPVSALIHAATMVTAGVFLVARMSPLFELSPFVL- 304 FL K H+WLP A +E P S L+ + G LV P+ L L Sbjct: 237 FLAMAVKIPIFPFHIWLPKAHVEAPVAGSVLLAGILLKLGGYGLVRLSWPILPLGAQNLA 296 Query: 305 DCITVLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVALGCR---AYGASIFHLFT 361 + +G + + + Q D+KR++AYS+ + +G + + L SIF + Sbjct: 297 PAVIAMGIVGIVYGSFATCRQIDVKRLVAYSSVAHMGLVSITLVTHDIIGLTGSIFIMLA 356 Query: 362 HAFFKALLFL 371 H +LLF+ Sbjct: 357 HGIVSSLLFI 366 >gnl|CDD|164589 MTH00014, ND4, NADH dehydrogenase subunit 4; Validated. Length = 452 Score = 44.7 bits (106), Expect = 9e-05 Identities = 61/272 (22%), Positives = 111/272 (40%), Gaps = 50/272 (18%) Query: 84 DTLSSVMFVVVNSISAVVHIYSIGYMHDDPHRPRFFSYLSFFTFAMLVLVSSDNLLQMFF 143 D LS+ + + I+A++ + S ++ F + + +L+ S+ NLL + Sbjct: 58 DMLSAPLITLTLWITALMILASFKIFQNNKAPKTFMTNILILNLILLLTFSASNLLMFYI 117 Query: 144 GWEGVGLASYLLIGFWSFKESAIKASMKAFVVNRIGDLGLILAISAIIYLFHSVDFDAVF 203 +E + + LI W ++ ++AS + L L+++I I Y +S+ Sbjct: 118 FFEASLIPTLFLILGWGYQPERLQASFYLMIYTVTASLPLLMSILLIFYTNNSLSM---- 173 Query: 204 QNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSIAIICLLFFLGAMGKSAQLLLHVWL 263 + S M + + + L+ L M K +H+WL Sbjct: 174 ------------LMSSMEPPSIYL-----------MNLWWLITILAFMVKMPLYTVHLWL 210 Query: 264 PDA-MEGPTPVSALIHAATMVTAGVFL------VARMSPLF-----ELSPFVLDCITVLG 311 P A +E P A +M+ AG+ L + RMS LF LS I+++G Sbjct: 211 PKAHVEAPV-------AGSMILAGILLKLGGYGLLRMSSLFMHINKSLSAPFS-SISLVG 262 Query: 312 CITAFFAATVGLVQHDIKRVIAYSTCSQLGYM 343 A + + + Q D+K +IAYS+ +G M Sbjct: 263 ---AVITSLICIRQPDLKSLIAYSSVGHMGLM 291 >gnl|CDD|164762 MTH00217, ND4, NADH dehydrogenase subunit 4; Provisional. Length = 482 Score = 41.2 bits (97), Expect = 0.001 Identities = 59/240 (24%), Positives = 100/240 (41%), Gaps = 46/240 (19%) Query: 145 WEGVGLASYLLIGFWSFKESAIKASMKAFVVNRIGDLGLILAISAIIYLFHSVDFDAV-- 202 +EG+ + +L+IG W +E ++AS F IG + ++L I + + D+ A+ Sbjct: 138 FEGILIPMFLIIGIWGSREEKVQASYYFFFYTFIGSVFMLLGIFTLYSYAGTTDYQALCC 197 Query: 203 --FQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSIAIICLLFFLGAMGKSAQLLLH 260 + Y+ I L FFL K ++ H Sbjct: 198 LKIEKELQYF-------------------------------IFLGFFLSLAIKIPKIPFH 226 Query: 261 VWLPDA-MEGPTPVSALIHAATMVTAGVFLVARMS-PLF-ELSPFVLDCITVLGCITAFF 317 +WLP A +E P S ++ A ++ G + R S PL E S + I L + + Sbjct: 227 IWLPQAHVEAPVAGSVIL-AGVLLKLGGYGFIRFSWPLLPEASEYFSPLIQTLSLLAIIY 285 Query: 318 AATVGLVQHDIKRVIAYSTCSQLGYMFVALGCRAYG-----ASIFHLFTHAFFKALLFLG 372 + Q D+KR+IAYS+ + +G V LG ++ A+IF + H + LF+ Sbjct: 286 GSLTTCRQVDLKRIIAYSSVAHMG--LVTLGIFSHTIQGLVAAIFLMLAHGLVSSALFIA 343 >gnl|CDD|177119 MTH00044, ND4, NADH dehydrogenase subunit 4; Validated. Length = 458 Score = 40.7 bits (96), Expect = 0.001 Identities = 58/272 (21%), Positives = 114/272 (41%), Gaps = 30/272 (11%) Query: 77 IPWGLRIDTLSSVMFVVVNSISAVVHIYSIGYMHDDPHRPR--FFSYLSFFTFAMLVLVS 134 + L D+LSS + ++ ++ + + SI ++ ++ + F S + A+++ S Sbjct: 53 LSLSLATDSLSSPLIILSCWLAPLSLLASINHLSNNSPNNQRTFISLIIIILTALIITFS 112 Query: 135 SDNLLQMFFGWEGVGLASYLLIGFWSFKESAIKASMKAFVVNRIGDLGLILAISAIIYLF 194 S L+ + +E + + +LI W ++ I+A + G L L++++ AI Sbjct: 113 SLELILFYIAFETTLIPTLILITRWGAQKERIQAGLYFLFYTLFGSLPLLISLIAI---- 168 Query: 195 HSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSIAIICLLFFLGAMGKS 254 SS +S + +S +I + L + K Sbjct: 169 --------------------YSSSSSLSIPLSELNWLTSLSSNSSSIWWIFCILAFLVKM 208 Query: 255 AQLLLHVWLPDA-MEGPTPVSALIHAATMVTAGVFLVARMSPLFEL--SPFVLDCITVLG 311 H+WLP A +E P S +I AA ++ G + + R+ LF L + + + V Sbjct: 209 PIYGFHLWLPKAHVEAPVAGS-MILAAILLKLGGYGLIRLINLFSLPSANNISFILIVFC 267 Query: 312 CITAFFAATVGLVQHDIKRVIAYSTCSQLGYM 343 C A + + L Q D+K +IAYS+ + + Sbjct: 268 CWGALITSIICLRQTDLKALIAYSSVGHMSLV 299 >gnl|CDD|176954 CHL00011, ndhD, NADH dehydrogenase subunit 4. Length = 498 Score = 38.8 bits (91), Expect = 0.005 Identities = 97/408 (23%), Positives = 170/408 (41%), Gaps = 81/408 (19%) Query: 125 FTFAMLV-------LVSSDNLLQMFFGWEGVGLASYLLIGFWSFKESAIKASMKAFVVNR 177 F F ML L SS +LL F WE + YLL+ W K+ A+ K + Sbjct: 114 FYFLMLAMYSGQIGLFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSAT-KFILYTA 172 Query: 178 IGDLGLILAISAI-IYLFHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPH 236 G + L++ + + +Y + + F+ ++++S+ Sbjct: 173 GGSIFLLIGVLGMGLYGSNEPTLN--FET---------------LANQSYPV-------- 207 Query: 237 DSIAIICLLFFLGAMG-KSAQLLLHVWLPDAMEGPTPVSALIHAAT-MVTAGVFL----- 289 ++ I+ + FL A K + LH WLPD T A H +T M+ AG+ L Sbjct: 208 -ALEILFYIGFLIAYAVKLPIIPLHTWLPD-----THGEA--HYSTCMLLAGILLKMGAY 259 Query: 290 -VARMSPLFELSP----FVLDCITVLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMF 344 + R++ EL P + ++G I +AA+ L Q ++K+ IAYS+ S +G++ Sbjct: 260 GLIRIN--MELLPHAHSIFSPWLVIVGAIQIIYAASTSLGQRNLKKRIAYSSVSHMGFII 317 Query: 345 VALGCRAY----GASIFHLFTHAFFKALLFLGSGSV---IHAVAGEQDMRRMGGLYPHLP 397 + +G GA I + +H F A LF +G+ I V ++ MGG+ +P Sbjct: 318 IGIGSITDTGLNGA-ILQIISHGFIGAALFFLAGTSYDRIRLVYLDE----MGGIAIPMP 372 Query: 398 RTCWMMIVGTLALTGFGIPETSIGFSGFFSKDIILEVAYTSSHFTFVF-----FLLLFAA 452 + M + ++ +P G SGF ++ I+ TS + + F++ Sbjct: 373 KIFTMF--SSFSMASLALP----GMSGFVAELIVFFGIITSQKYLLMPKILITFVMAIGM 426 Query: 453 FLTSFYSWRLMFLTFFGKMRVDKDISHKIHESP--LVMQIPLFILAIG 498 LT Y ++ F+G + S+ P L + I + + IG Sbjct: 427 ILTPIYLLSMLRQMFYGYKLFNVPNSYFFDSGPRELFISICILLPVIG 474 >gnl|CDD|164746 MTH00198, ND2, NADH dehydrogenase subunit 2; Provisional. Length = 607 Score = 38.3 bits (89), Expect = 0.007 Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 9/101 (8%) Query: 253 KSAQLLLHVWLPDAMEG-PTPVSALIHAATMVTAGVFLVARMSPLFELSPFVLDCITVLG 311 K A H+W PD EG PTP +ALI T + L + + ++ +L + ++ Sbjct: 312 KLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYILLTSLV-----ITSKLLLSVAIIS 366 Query: 312 CITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVALGCRAY 352 + F A L Q IKR++AYS +G++ + + Y Sbjct: 367 LVVGAFGA---LNQTRIKRLLAYSGIGHIGFILIGVSAGTY 404 >gnl|CDD|177202 MTH00144, ND2, NADH dehydrogenase subunit 2; Provisional. Length = 328 Score = 37.6 bits (88), Expect = 0.013 Identities = 57/263 (21%), Positives = 104/263 (39%), Gaps = 23/263 (8%) Query: 244 LLFFLGAMGKSAQLLLHVWLPDAMEGPTPVSALIHAATMVTAGVFLVARMSPLFELSPFV 303 L LG K H W+P M G + +S + A +FL+ F ++ Sbjct: 88 SLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLL----SNFLDLYWL 143 Query: 304 LDCITVLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVALGCRAYGASIFHLFTHA 363 + V+ ++A + GL Q ++ ++AYS+ S G+M VA+ + + Sbjct: 144 AYLLCVISVLSALVGSIGGLNQTQVRALLAYSSISHTGWMLVAILH-GSWLMWMYFLIYI 202 Query: 364 FFKALLFLGSGSVIHAVAGEQDMRRMGGLYPHLPRTCWMMIVGTLALTGFGIPETSIGFS 423 LF S D M L P + + +L L+ G+P F Sbjct: 203 VSSGFLFFSLWS--------GDSGSMKDLGSLKPSYKTGLSIISLLLSLGGLPP----FL 250 Query: 424 GFFSKDIILEVAYTSSHFTFVFFLLLFAAFLTSFYSWRLMFLTFFGKMRVDKDISHKIHE 483 GF SK ++L ++ S + LLL + ++ F+ + F +F + K S K+ Sbjct: 251 GFCSKLLVL-ISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFLSSSKSKKSNSSKVLN 309 Query: 484 SPLVMQIPLFILAIGSIFFGFIF 506 S ++ + +G + F ++ Sbjct: 310 SSIIS-----LNLLGGLLFLLLY 327 >gnl|CDD|177140 MTH00068, ND4, NADH dehydrogenase subunit 4; Provisional. Length = 458 Score = 37.2 bits (87), Expect = 0.017 Identities = 40/116 (34%), Positives = 57/116 (49%), Gaps = 26/116 (22%) Query: 243 CLLFFLGAMGKSAQLLLHVWLPDAMEGPTPVSALIHAATMVTAGVFL------VARMSPL 296 CLL F M K LH+WLP A V A I A +M+ A V L + R+S L Sbjct: 199 CLLAF---MVKMPLYGLHLWLPKAH-----VEAPI-AGSMILAAVLLKLGGYGILRISIL 249 Query: 297 F-----ELS-PFVLDCITVLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVA 346 ELS PF++ + + G + + + L Q D+K +IAYS+ S +G + A Sbjct: 250 LTPLSKELSYPFII--LALWGVL---MTSLICLRQTDLKSLIAYSSVSHMGLVIAA 300 >gnl|CDD|177250 MTH00206, ND4, NADH dehydrogenase subunit 4; Provisional. Length = 450 Score = 36.8 bits (86), Expect = 0.021 Identities = 50/238 (21%), Positives = 90/238 (37%), Gaps = 42/238 (17%) Query: 118 FFSYLSFFTFAMLVLVSSDNLLQMFFGWEGVGLASYLLIGFWSFKESAIKASMKAFVVNR 177 + + L +++ SS NLL + +E + + LLI W ++ + A Sbjct: 94 YITLLIVLQLFLILFFSSSNLLLFYILFEASLIPTLLLITRWGNQKERLNAGYYFLFYTL 153 Query: 178 IGDLGLILAISAIIYLFHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHD 237 IG L L++A+ + S G +S F + Sbjct: 154 IGSLPLLIAL------------------------LFLQNSLGSLSLYILYFSKLTTW--- 186 Query: 238 SIAIICLLFFLGAMGKSAQLLLHVWLPDA-MEGPTPVSALIHAATMVTAGVFL------V 290 + + L L + K +H+WLP A +E P A +MV AGV L + Sbjct: 187 NNNLWWLACILAFLVKLPLYGVHLWLPKAHVEAPV-------AGSMVLAGVLLKLGGYGM 239 Query: 291 ARMSPLF-ELSPFVLDCITVLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVAL 347 R+ + + +LG + +++ L Q D+K +IAYS+ S + + + Sbjct: 240 MRIILILGPSTKLSSYFFIILGLWGSIMTSSICLRQTDLKSLIAYSSVSHMSLVTAGI 297 >gnl|CDD|177249 MTH00205, ND4, NADH dehydrogenase subunit 4; Provisional. Length = 448 Score = 35.0 bits (81), Expect = 0.079 Identities = 67/339 (19%), Positives = 122/339 (35%), Gaps = 59/339 (17%) Query: 17 VFSGFFGRLMGKQFADIFTSLLMVIGAFLSWYVFYEIGFGHDVQVVKREIFPWIIFDGLD 76 VFS + K F S L++IG F S + F +I Sbjct: 6 VFSLLIILFVLKFKDWSFFSNLLLIGLFFSSFFFSNSFLM----------TSFISS---- 51 Query: 77 IPWGLRIDTLSSVMFVVVNSISAVVHIYSIGYMHDDPHRPRFFSYLSFFTFAMLVLVSSD 136 D+LS + ++ IS ++ + S + + F + +++ S D Sbjct: 52 ---SFSFDSLSLPLIMLSFWISLLMVLASYKVFKSNKNSKLFTVSVIMLLLILILSFSVD 108 Query: 137 NLLQMFFGWEGVGLASYLLIGFWSFKESAIKASMKAFVVNRIGDLGLILAISAIIYLFHS 196 NLL + +E + + +LI W ++ ++ASM + L L++ + +L Sbjct: 109 NLLLFYITFEASLIPTLILILGWGYQPERLQASMYMMMYTLCASLPLLI---GLFFLNS- 164 Query: 197 VDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSIAIICLLFFLGAMGKSAQ 256 + S M + F + + L + K Sbjct: 165 -----------------LNFSLSMFFNFPL-NFSDFYL-----FLYWIFLMLAFLVKLPM 201 Query: 257 LLLHVWLPDA-MEGPTPVSALIHAATMVTAGVFL------VAR-MSPLFELSPFVLDCIT 308 +H+WLP A +E P + +M+ AGV L + R S L++L+ + Sbjct: 202 YFVHLWLPKAHVEAPV-------SGSMILAGVLLKLGGYGLIRITSMLYKLNSNFSELFF 254 Query: 309 VLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVAL 347 + + L Q D+K +IAYS+ +G M V + Sbjct: 255 SISLWGGVMTGMICLRQVDLKSLIAYSSVGHMGLMVVGV 293 >gnl|CDD|177174 MTH00112, ND2, NADH dehydrogenase subunit 2; Provisional. Length = 346 Score = 34.4 bits (80), Expect = 0.11 Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 5/105 (4%) Query: 243 CLLFFLGAMGKSAQLLLHVWLPDAMEGPTPVSALIHAATMVTAGVFLVARMSPLFELSPF 302 C L L K H WLP+ ++G T +ALI + A + L+ S L+P Sbjct: 95 CTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNS--LNPT 152 Query: 303 VLDCITVLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVAL 347 +L L ++ GL Q +++++A+S+ + LG+M + Sbjct: 153 LL---LTLAILSTLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAII 194 >gnl|CDD|164587 MTH00011, ND2, NADH dehydrogenase subunit 2; Validated. Length = 330 Score = 34.0 bits (78), Expect = 0.12 Identities = 47/255 (18%), Positives = 95/255 (37%), Gaps = 19/255 (7%) Query: 244 LLFFLGAMGKSAQLLLHVWLPDAMEGPTPVSALIHAATMVTAGVFLVARMSPLFELSPFV 303 L+ + M K H W P M + LI + A + ++ + L Sbjct: 92 LMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILP--- 148 Query: 304 LDCITVLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVALGCRAYGASIFHLFTHA 363 +T + ++A G+ Q ++ ++AYS+ +G+M + + +I + T+ Sbjct: 149 --MMTSMAAMSALAGGLGGMNQTQLRPLLAYSSIGHMGWMTMIS-VFSPSMAILYFMTYI 205 Query: 364 FFKALLFLGSGSVIHAVAGEQDMRRMGGLYPHLPRTCWMMIVGTLALTGFGIPETSIGFS 423 L L + A + + T + + L+L G+P F+ Sbjct: 206 IITTPLML-----LFAYLNAFSTKFNSKISSMSQTTSMSLFIMLLSLG--GLPP----FT 254 Query: 424 GFFSKDIILEVAYTSSHFTFVFFLLLFAAFLTSFYSWRLMFLTFFGKMRVDKDISHKIHE 483 GF K + +E TS+ + +L+ + + FY L+F F + +E Sbjct: 255 GFMPKLMAIE-TLTSNSMILILLVLIVGSLMNLFYYLNLIF-NFMYLSPTFSSLKSAPYE 312 Query: 484 SPLVMQIPLFILAIG 498 + I + L++G Sbjct: 313 PKTKILISMCTLSLG 327 >gnl|CDD|177186 MTH00127, ND4, NADH dehydrogenase subunit 4; Provisional. Length = 459 Score = 34.2 bits (78), Expect = 0.12 Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 4/100 (4%) Query: 243 CLLFFLGAMGKSAQLLLHVWLPDAMEGPTPVSALIHAATMVTAGVFLVARMSPLFE-LSP 301 CLL FL M +H+WLP A +++ AA ++ G + + RM + + L+ Sbjct: 200 CLLAFLVKMPLYG---VHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRMMVMLDPLTK 256 Query: 302 FVLDCITVLGCITAFFAATVGLVQHDIKRVIAYSTCSQLG 341 + +L ++ L Q D+K +IAYS+ S +G Sbjct: 257 ELSYPFIILALWGIIMTGSICLRQTDLKSLIAYSSVSHMG 296 >gnl|CDD|177244 MTH00197, ND2, NADH dehydrogenase subunit 2; Provisional. Length = 323 Score = 33.5 bits (77), Expect = 0.19 Identities = 43/225 (19%), Positives = 91/225 (40%), Gaps = 20/225 (8%) Query: 243 CLLFFLGAMGKSAQLLLHVWLPDAMEGPTPVSALIHAATMVTAGVFLVARMSPLFELSPF 302 +L LG + K H W+P ME + + + A A + ++A S F Sbjct: 82 VVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSSSFMG--- 138 Query: 303 VLDCITVLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVALGCRAYGASIFHLFTH 362 + + +++ G+ Q +I++++AYS+ G+M ++L +++L Sbjct: 139 ----LLICSVLSSLIGGIGGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYF 194 Query: 363 AFFKALLFLGSGSVIHAVAGEQDMRRMGGLYPHLPRTCWMMIVGTLALTGFGIPETSIGF 422 L S + + ++ + ++ +G L+ G+P Sbjct: 195 VIMFMLFLFLSKNNLSSLNQQYSNPESMSSN--------LVFLGLSFLSLGGLPP----L 242 Query: 423 SGFFSKDIILEVAYTSSHFTFVFFLLLFAAFLTSFYSWRLMFLTF 467 SGFF K +IL SS+ + + F+L+ + + +Y L + + Sbjct: 243 SGFFLKWLILTSL-LSSNISLITFMLILSTCFSLYYYLSLAYKSL 286 >gnl|CDD|177246 MTH00200, ND2, NADH dehydrogenase subunit 2; Provisional. Length = 347 Score = 33.0 bits (76), Expect = 0.27 Identities = 65/340 (19%), Positives = 130/340 (38%), Gaps = 59/340 (17%) Query: 129 MLVLVSSDNLLQMFFGWEGVGLASYLLIGFWSFKES--AIKASMKAFVVNRIGDLGLILA 186 +L SS F W G+ + + +I + ++A+ K F +I A Sbjct: 18 LLTFSSSH----WFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYF---------IIQA 64 Query: 187 ISAIIYLFHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSIAIICLLF 246 ++ + LF + + S W I + S I ++ L Sbjct: 65 TASALLLFGGL----LNAWTSGQWGISEMLGP-------LSETLI---------LLALAL 104 Query: 247 FLGAMGKSAQLLLHVWLPDAMEGPTPVSALIHAATMVTAGVFLVARMSPLFELSPFVLDC 306 LG H W+PD ++G + + LI + A L+ +++P + Sbjct: 105 KLGLAP------GHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSN-----I 153 Query: 307 ITVLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVALGCRAYGASIFHLFTHAFFK 366 + +LG ++ GL Q +++++AYS+ + LG++ L Y ++ L+ + Sbjct: 154 LLLLGLLSVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGL---VYSPNLALLYLLLYVI 210 Query: 367 ALLFLGSGSVIHAVAGEQDMRRMGGLYPHLPRTCWMMIVGTLALTGFGIPETSIGFSGFF 426 L + ++ + + + P ++ + L+L G+P +GFF Sbjct: 211 ITLTV---FLLLNLLNSTKINSLSSSKTKNPILSMLLGLTLLSLG--GLP----PLTGFF 261 Query: 427 SKDIILEVAYTSSHFTFVFFLLLFAAFLTSFYSWRLMFLT 466 K +IL + +LL + L+ F+ RL +LT Sbjct: 262 PKWLIL-QELSKQGLFIYATILLLGSLLSLFFYLRLSYLT 300 >gnl|CDD|144913 pfam01496, V_ATPase_I, V-type ATPase 116kDa subunit family. This family consists of the 116kDa V-type ATPase (vacuolar (H+)-ATPases) subunits, as well as V-type ATP synthase subunit i. The V-type ATPases family are proton pumps that acidify intracellular compartments in eukaryotic cells for example yeast central vacuoles, clathrin-coated and synaptic vesicles. They have important roles in membrane trafficking processes. The 116kDa subunit (subunit a) in the V-type ATPase is part of the V0 functional domain responsible for proton transport. The a subunit is a transmembrane glycoprotein with multiple putative transmembrane helices it has a hydrophilic amino terminal and a hydrophobic carboxy terminal. It has roles in proton transport and assembly of the V-type ATPase complex. This subunit is encoded by two homologous gene in yeast VPH1 and STV1. Length = 707 Score = 33.1 bits (76), Expect = 0.28 Identities = 25/102 (24%), Positives = 42/102 (41%), Gaps = 8/102 (7%) Query: 441 FTFVFFLLLFAAFLTSFYSWRLMFLTFFGKMRVDKDISHKIHESPLVMQIPLFILAIGSI 500 FT + F F LMFL + ++K K+ + + L ++ + SI Sbjct: 357 FTIITFPFFFGMMFGDAGYGLLMFLIALLLVLLEK----KLGKKKFKGRYILLLMGVFSI 412 Query: 501 FFGFIFHDVFFGSA---YSSFWKGALFASSSNNVLERYHEVP 539 + GFI++D FG + + S W + S + HE P Sbjct: 413 YTGFIYND-CFGKSLNIFGSGWLWPVMIKSGETLTLAPHEGP 453 >gnl|CDD|177142 MTH00070, ND2, NADH dehydrogenase subunit 2; Provisional. Length = 346 Score = 33.0 bits (76), Expect = 0.30 Identities = 53/216 (24%), Positives = 100/216 (46%), Gaps = 31/216 (14%) Query: 259 LHVWLPDAMEGPTPVSALIHAATMVTAGVFLVARMSPLFELSPFV-LDCITVLGCITAFF 317 H WLP+ ++G + LI + T +A M+ L ++S + + + ++G ++ Sbjct: 111 FHFWLPEVLQGLDLTTGLI----LSTWQK--LAPMALLIQISHLLNSNLLIIMGLLSTLI 164 Query: 318 AATVGLVQHDIKRVIAYSTCSQLGYMFVALG----CRAYGASIFHLFTHAFFKALLFLGS 373 GL Q +++++AYS+ + LG+M + L I+ + T + F L+ L S Sbjct: 165 GGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNS 224 Query: 374 GSVIHAVAGEQDMRRMGGLYPHLPRTCWMMIVGTLALTGFGIPETSIGFSGFFSKDIILE 433 + + ++ + P MM++ L+L G+P T +GF K +IL+ Sbjct: 225 TN----------INKLSSSWSKNPTLTSMMMLTLLSLG--GLPPT----TGFIPKWLILQ 268 Query: 434 VAYTSSHFTFVFFLLLFAAFLTSFYSWRL---MFLT 466 T + T + L+ +A L+ F+ RL M LT Sbjct: 269 -ELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLT 303 >gnl|CDD|177245 MTH00199, ND2, NADH dehydrogenase subunit 2; Provisional. Length = 460 Score = 31.5 bits (72), Expect = 0.72 Identities = 37/109 (33%), Positives = 53/109 (48%), Gaps = 17/109 (15%) Query: 241 IICLLFFLGAMGKSAQLLLHVWLPDAMEG-PTPVSALIHAATMVTAGVFLVARMSPLFEL 299 I LLF L A H+W PD EG PT +AL+ AT+ GVF S L ++ Sbjct: 197 TISLLFKLSAAP------FHMWAPDVYEGAPTITTALL--ATVPKIGVF-----SILVQI 243 Query: 300 SPFVLDCITVLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVALG 348 P V + + + ++ + A L Q IKR++AYS +G F+ G Sbjct: 244 GP-VTNVVLICAVLSIIYGAIGALNQTKIKRLLAYSGIGHMG--FILFG 289 >gnl|CDD|144555 pfam01010, Oxidored_q1_C, NADH-Ubiquinone oxidoreductase (complex I), chain 5 C-terminus. This sub-family represents a carboxyl terminal extension of pfam00361. Only NADH-Ubiquinone chain 5 from chloroplasts are in this family. This sub-family is part of complex I which catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane. Length = 242 Score = 31.4 bits (72), Expect = 0.82 Identities = 30/105 (28%), Positives = 41/105 (39%), Gaps = 18/105 (17%) Query: 466 TFFGKMRVDKDISHKIHESPLVMQIPLFILAIGSIFFGFI---FHDVFFGSAYSSFWKGA 522 T FG K HES M PL +L + ++F GFI F+ S W Sbjct: 81 THFGN----KKTFSYPHESDNTMLFPLLVLVLFTLFVGFIGIPFNQEGIDLDILSKW--- 133 Query: 523 LFASSSNNVLERYHEVPLWVE------YSSFIAFFVGFFSAFLMY 561 S N + + + W E +S IA+F G F A +Y Sbjct: 134 -LTPSINLLHQNSNNSVDWYEFLKNAIFSVSIAYF-GIFIASFLY 176 >gnl|CDD|177183 MTH00124, ND4, NADH dehydrogenase subunit 4; Provisional. Length = 457 Score = 31.3 bits (72), Expect = 0.96 Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 13/90 (14%) Query: 259 LHVWLPDAMEGPTPVSALIHAATMVTAGVFL------VARMSPLF-ELSPFVLDCITVLG 311 LH+WLP A V A I A +MV A + L + R++ L LS + L Sbjct: 212 LHLWLPKAH-----VEAPI-AGSMVLAAILLKLGGYGIIRITLLLPPLSNTLHYPFLTLA 265 Query: 312 CITAFFAATVGLVQHDIKRVIAYSTCSQLG 341 A + + L Q D+K +IAYS+ S +G Sbjct: 266 LWGALMTSLICLRQTDLKSLIAYSSVSHMG 295 >gnl|CDD|37379 KOG2168, KOG2168, KOG2168, Cullins [Cell cycle control, cell division, chromosome partitioning]. Length = 835 Score = 30.3 bits (68), Expect = 1.9 Identities = 18/80 (22%), Positives = 28/80 (35%), Gaps = 11/80 (13%) Query: 401 WMMIVGTLALTGFGIPETSIGFSGFFSKDIILEVAYTSSHFT------FVFFLLLFAAFL 454 W + T F KDI+ AY S+FT ++F +L L Sbjct: 426 WFKLSLIRVDDQGSDSPTDELFLLEDQKDIL--EAYGESYFTNNGSQPLLYFQVLL---L 480 Query: 455 TSFYSWRLMFLTFFGKMRVD 474 + + + FL R+D Sbjct: 481 SGQFERAIEFLHREEPNRID 500 >gnl|CDD|177172 MTH00110, ND4, NADH dehydrogenase subunit 4; Provisional. Length = 459 Score = 29.5 bits (67), Expect = 3.4 Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 23/100 (23%) Query: 259 LHVWLPDAMEGPTPVSALIHAATMVTAGVFL------VARMSPLFELS------PFVLDC 306 LH+WLP A V A I A +MV A + L + R++ + PF++ Sbjct: 212 LHLWLPKAH-----VEAPI-AGSMVLAAILLKLGGYGMMRITIILNPLTEFMAYPFLM-- 263 Query: 307 ITVLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVA 346 +++ G I +++ L Q D+K +IAYS+ S + + VA Sbjct: 264 LSLWGMI---MTSSICLRQTDLKSLIAYSSVSHMALVIVA 300 >gnl|CDD|177219 MTH00163, ND4, NADH dehydrogenase subunit 4; Provisional. Length = 445 Score = 29.0 bits (66), Expect = 4.7 Identities = 49/239 (20%), Positives = 86/239 (35%), Gaps = 46/239 (19%) Query: 118 FFSYLSFFTFAMLVLV-SSDNLLQMFFGWEGVGLASYLLIGFWSFKESAIKASMKAFVVN 176 F +L F L+L SS NLL + +E + + LI W ++ ++A + Sbjct: 88 LFLFLILFLLIFLLLTFSSMNLLLFYIFFESSLIPTLFLILGWGYQPERLQAGIYLLFYT 147 Query: 177 RIGDLGLILAISAIIYLFHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPH 236 L L++ I + S+ F S++ Sbjct: 148 LFASLPLLVGIFYLYNNSGSLSF--------FLLNFFGSLNFLWY--------------- 184 Query: 237 DSIAIICLLFFLGAMGKSAQLLLHVWLPDA-MEGPTPVSALIHAATMVTAGVFL------ 289 L L + K +H+WLP A +E P + +M+ AGV L Sbjct: 185 -------LSMILAFLVKMPMFFVHLWLPKAHVEAPV-------SGSMILAGVLLKLGGYG 230 Query: 290 VARMSPLFELSPFVLDCI-TVLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVAL 347 + R+ F + I + + + + L Q D+K +IAYS+ + +G + L Sbjct: 231 LLRVMSFFSKLGLKFNYIWISISLVGGVIVSLICLRQVDLKSLIAYSSVAHMGLVLGGL 289 >gnl|CDD|177193 MTH00135, ND2, NADH dehydrogenase subunit 2; Provisional. Length = 347 Score = 28.2 bits (64), Expect = 8.4 Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 24/98 (24%) Query: 259 LHVWLPDAMEGPTPVSALIHAATMVTAGVFLVARMSPLFELSPFVLDC---------ITV 309 LH WLP+ ++G + LI +S +L+PF L + Sbjct: 111 LHFWLPEVLQGLDLTTGLI---------------LSTWQKLAPFALILQIAPTNPTLLIT 155 Query: 310 LGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVAL 347 LG + GL Q +++++AYS+ + LG+M + L Sbjct: 156 LGLTSTLVGGWGGLNQTQLRKILAYSSIAHLGWMILVL 193 >gnl|CDD|143864 pfam00083, Sugar_tr, Sugar (and other) transporter. Length = 449 Score = 28.0 bits (63), Expect = 9.6 Identities = 13/35 (37%), Positives = 22/35 (62%) Query: 12 PLIGAVFSGFFGRLMGKQFADIFTSLLMVIGAFLS 46 LIG++F+G G G++ + + ++L VIGA L Sbjct: 59 CLIGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQ 93 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.334 0.146 0.465 Gapped Lambda K H 0.267 0.0779 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 8,791,447 Number of extensions: 528205 Number of successful extensions: 3461 Number of sequences better than 10.0: 1 Number of HSP's gapped: 3161 Number of HSP's successfully gapped: 272 Length of query: 666 Length of database: 6,263,737 Length adjustment: 100 Effective length of query: 566 Effective length of database: 4,102,837 Effective search space: 2322205742 Effective search space used: 2322205742 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (21.5 bits) S2: 61 (27.2 bits)