RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780865|ref|YP_003065278.1| NADH dehydrogenase subunit L
[Candidatus Liberibacter asiaticus str. psy62]
(666 letters)
>gnl|CDD|177253 MTH00210, ND5, NADH dehydrogenase subunit 5; Provisional.
Length = 616
Score = 573 bits (1478), Expect = e-164
Identities = 287/655 (43%), Positives = 400/655 (61%), Gaps = 58/655 (8%)
Query: 4 IYEVIVFLPLIGAVFSGFFGRLMGKQFADIFTSLLMVIGAFLSWYVFYEIGFGHDVQVVK 63
+Y +++FLPL+ A+ SG FGR +G + A I TS +VI A +S +FYE +K
Sbjct: 1 MYILVLFLPLLSAIISGLFGRKIGTKGAGILTSSCIVISAIVSCCIFYETTLNGSATYIK 60
Query: 64 REIFPWIIFDGLDIPWGLRIDTLSSVMFVVVNSISAVVHIYSIGYMHDDPHRPRFFSYLS 123
++ W + L +GL+ D+L+S M +V+ S+SA+VHIYS GYM DPH PRF SYLS
Sbjct: 61 --LWRWFDSELLTTYFGLQFDSLTSTMLIVITSVSALVHIYSTGYMSGDPHIPRFMSYLS 118
Query: 124 FFTFAMLVLVSSDNLLQMFFGWEGVGLASYLLIGFWSFKESAIKASMKAFVVNRIGDLGL 183
FTF M+VLV+SDN +Q+F GWEGVGL SYLLI FW + A KA++KA ++NR+GD+GL
Sbjct: 119 LFTFLMIVLVTSDNYVQLFIGWEGVGLCSYLLINFWLTRIKANKAAIKAMLINRVGDIGL 178
Query: 184 ILAISAIIYLFHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSIAIIC 243
+LA+ I+ F +++F + +S+ ++ +S+ IIC
Sbjct: 179 VLAMIMILKEFGTLEFSTI-----------SSLLVTNINK-------------ESLTIIC 214
Query: 244 LLFFLGAMGKSAQLLLHVWLPDAMEGPTPVSALIHAATMVTAGVFLVARMSPLFELSPFV 303
LL F+GA+GKSAQL LH WLPDAMEGPTPVSALIHAATMVTAGVFL+ R PLFE SP
Sbjct: 215 LLLFIGAVGKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLIIRSGPLFEGSPLA 274
Query: 304 LDCITVLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVALGCRAYGASIFHLFTHA 363
L +T+LG +TAFFAATVG+VQ+D+K+VIAYSTCSQLGYM + G Y S+FHL HA
Sbjct: 275 LTIVTILGALTAFFAATVGVVQNDLKKVIAYSTCSQLGYMVMVCGISNYSTSLFHLMNHA 334
Query: 364 FFKALLFLGSGSVIHAVAGEQDMRRMGGLYPHLPRTCWMMIVGTLALTGFGIPETSIGFS 423
FFKALLFL +GSVIHAV+ EQDMR+MGGL +P T M+++G+L+L GF +
Sbjct: 335 FFKALLFLSAGSVIHAVSDEQDMRKMGGLIKSIPFTYVMILIGSLSLMGFPY------LT 388
Query: 424 GFFSKDIILEVAYTSSHFTFVFFLLLFAAFLTSFYSWRLMFLTFFGKMRVDKDISHKIHE 483
GF+SKD+ILE+ Y + F ++L F+A LT+FYS RL++LTF K++ +HE
Sbjct: 389 GFYSKDLILELTYDKYYIAFAYWLGSFSALLTAFYSIRLIYLTFITNTNSKKEVFIGVHE 448
Query: 484 SPLVMQIPLFILAIGSIFFGFIFHDVFFGSAYSSFWKGALFASSSNNVLERYHEVPLWVE 543
S + PL +LA GSIF G++ +V + VP ++
Sbjct: 449 SSWNITFPLLLLAFGSIFVGYLGKEVVLSNVIPPI-------------------VPNSIK 489
Query: 544 YSSFIAFFVGFFSAFLMY-----IICPSLPKFLSEKCRFFYCFLQNAWYFDRIYDCLLVR 598
+ +G AF++Y +I S Y FL +AW F+ + + +V+
Sbjct: 490 MIPLLFSLLGALLAFVIYNSMVFLIKISRRGVSIRLYHVIYTFLNSAWQFNYVINHFIVK 549
Query: 599 PIVRLA-TILWKRVDLSIDKY-GPGGIVACVRYLSSYSSRLQTGYLDHYAFSMLI 651
I + I ++ +D + + GP GI + L+ S LQ+G + +YA M+I
Sbjct: 550 NIWKFGHLITYRIIDRGLLEIIGPRGISKVLIKLTQKISNLQSGMVFNYALIMII 604
>gnl|CDD|164593 MTH00020, ND5, NADH dehydrogenase subunit 5; Reviewed.
Length = 610
Score = 546 bits (1408), Expect = e-156
Identities = 295/660 (44%), Positives = 404/660 (61%), Gaps = 59/660 (8%)
Query: 4 IYEVIVFLPLIGAVFSGFFGRLMGKQFADIFTSLLMVIGAFLSWYVFYEIGFGHDVQVVK 63
+Y +++FLPL+GA+ SG FGR +G++ A I TS ++I S+ +FYEI F +K
Sbjct: 1 MYLLVLFLPLLGALLSGLFGRKIGEKGAGILTSSCLIISLSWSFLIFYEILFNSSTTYIK 60
Query: 64 REIFPWIIFDGLDIPWGLRIDTLSSVMFVVVNSISAVVHIYSIGYMHDDPHRPRFFSYLS 123
++ W+ D L + +GL+ D L ++M +VV ++S +VHI+S YM DPH PRF SYLS
Sbjct: 61 --LWRWLDSDLLTVYFGLQFDGLVAIMLLVVTTVSTLVHIFSTAYMRGDPHIPRFMSYLS 118
Query: 124 FFTFAMLVLVSSDNLLQMFFGWEGVGLASYLLIGFWSFKESAIKASMKAFVVNRIGDLGL 183
FTF M+VLV+SDN LQ+F GWEGVGL SYLLI FW + A KA++KA +VNR+GD+GL
Sbjct: 119 LFTFLMVVLVTSDNYLQLFIGWEGVGLCSYLLINFWLTRIEANKAAIKAMLVNRVGDIGL 178
Query: 184 ILAISAIIYLFHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSIAIIC 243
+LA+ + F S+DF +VF N V S P I +IC
Sbjct: 179 LLAMFLLWDRFGSLDFSSVF----------NMVVSA---------------PSSDITLIC 213
Query: 244 LLFFLGAMGKSAQLLLHVWLPDAMEGPTPVSALIHAATMVTAGVFLVARMSPLFELSPFV 303
L F+GA+GKSAQL LH WLPDAMEGPTPVSALIHAATMVTAGVFL+ R SPLFE +P
Sbjct: 214 LFLFIGAVGKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLLIRSSPLFEQAPLA 273
Query: 304 LDCITVLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVALGCRAYGASIFHLFTHA 363
L +T++G +T FFAATVGLVQ+D+K+VIAYSTCSQLGYM VA G Y S+FHL HA
Sbjct: 274 LIIVTIVGSLTVFFAATVGLVQNDLKKVIAYSTCSQLGYMVVACGLSHYSISLFHLMNHA 333
Query: 364 FFKALLFLGSGSVIHAVAGEQDMRRMGGLYPHLPRTCWMMIVGTLALTGFGIPETSIGFS 423
FFKALLFL +GSVIHA++ EQDMR+MGGL LP T ++G+L+L GF +
Sbjct: 334 FFKALLFLSAGSVIHALSDEQDMRKMGGLISFLPLTYIFFLIGSLSLMGFPY------LT 387
Query: 424 GFFSKDIILEVAYTSSHFTFVFFLLLFAAFLTSFYSWRLMFLTFFGKMRVDKDISHKIHE 483
GF+SKD+ILE+A+ + F ++L F+A LT+FYS RL++LTF + K + +HE
Sbjct: 388 GFYSKDLILELAFGQYYLIFAYWLGCFSALLTAFYSIRLIYLTFLSNTNLKKAVFFHLHE 447
Query: 484 SPLVMQIPLFILAIGSIFFGFIFHDVFFGSAYSSFWKGALFASSSNNVLERYHEVPLWVE 543
+ +PL ILA+GSIF G++ ++ + F + + VPL ++
Sbjct: 448 GDWNLLLPLGILALGSIFVGYLAKEMIWS-----------FQITLPPI------VPLSIK 490
Query: 544 YSSFIAFFVGFFSAFLMYI-ICPSLPKFLSEKCRFFYCFLQNAWYFDRIYDCLLVRPIVR 602
G ++Y + S R Y FL +AW F+ I + L++ I +
Sbjct: 491 LLPVFLSLGGIGLVIILYFYSSKTFRVPFSFIGRNSYTFLGSAWQFNYILNYFLIKKIWK 550
Query: 603 LATILWKRVDLSIDK-----YGPGGIVACVRYLSSYSSRLQTGYLDHYAFSMLIGISILV 657
++ R IDK GP GI + L+ S LQ+G + +YA +LIG++I +
Sbjct: 551 GGHLISYRT---IDKGVLELVGPKGISNFLIILTQGLSSLQSGLVFNYALVILIGVAIFI 607
>gnl|CDD|31213 COG1009, NuoL, NADH:ubiquinone oxidoreductase subunit 5 (chain
L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy
production and conversion / Inorganic ion transport and
metabolism].
Length = 606
Score = 458 bits (1181), Expect = e-129
Identities = 272/657 (41%), Positives = 369/657 (56%), Gaps = 59/657 (8%)
Query: 8 IVFLPLIGAVFSGFFGRLMGKQFADIFTSLLMVIGAFLSWYVFYEIGFGHDVQVVKREIF 67
I+ LPLIGA+ + GR G++ A L ++ LS + + + G + + +
Sbjct: 4 IILLPLIGALIALLLGRT-GRRLAAWLALLAPLVSLLLSALILFIVLAGPVLVTL----Y 58
Query: 68 PWIIFDGLDIPWGLRIDTLSSVMFVVVNSISAVVHIYSIGYMHDDPHRPRFFSYLSFFTF 127
W+ GL+ +GLRID LS +M ++V + ++H+YSIGYM DP RFF+YL FT
Sbjct: 59 TWLPSGGLN--FGLRIDGLSLLMALLVTGVGFLIHLYSIGYMSHDPGLGRFFAYLLLFTG 116
Query: 128 AMLVLVSSDNLLQMFFGWEGVGLASYLLIGFWSFKESAIKASMKAFVVNRIGDLGLILAI 187
+ML LV SDNLL +F WE GLASYLLIGFW + SA +A+ KAF+V R+GDLGL+L I
Sbjct: 117 SMLGLVLSDNLLLLFVFWELTGLASYLLIGFWYSRPSARRAARKAFLVTRVGDLGLLLGI 176
Query: 188 SAIIYLFHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSIAIICLLFF 247
+ L + A+ + I + + +I LL
Sbjct: 177 ILLYLLTGTTLLSEELFAAALFADISPPL----------------------LTLILLLLL 214
Query: 248 LGAMGKSAQLLLHVWLPDAMEGPTPVSALIHAATMVTAGVFLVARMSPLFELSPFVLDCI 307
LGA GKSAQ H WLPDAMEGPTPVSAL+HAATMV AGV+L+AR+SPLF LSP L +
Sbjct: 215 LGAFGKSAQFPFHTWLPDAMEGPTPVSALLHAATMVKAGVYLLARLSPLFALSPEALWLV 274
Query: 308 TVLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVA--LGCRAYGASIFHLFTHAFF 365
++G +TA AA + LVQ+DIKR++AYST SQLGYMFVA LG AY A+IFHL THAFF
Sbjct: 275 ILVGAVTALLAALIALVQNDIKRILAYSTISQLGYMFVALGLGSLAYEAAIFHLVTHAFF 334
Query: 366 KALLFLGSGSVIHAVAGEQDMRRMGGLYPHLPRTCWMMIVGTLALTGFGIPETSIGFSGF 425
KALLFL +GSVIHA G +D+R++GGL +P T ++G LAL G F+GF
Sbjct: 335 KALLFLSAGSVIHA-TGTRDIRKLGGLRKKMPITFVAFLIGALALAGVPP------FAGF 387
Query: 426 FSKDIILEVAYTSSH--FTFVFFLLLFAAFLTSFYSWRLMFLTFFGKMRVDKDISHKIHE 483
FSKD+ILE A +SH + L L A LT+FYS+RL+FL FFGK R +++ H HE
Sbjct: 388 FSKDMILEAALAASHLSGGLLLLLALIGALLTAFYSFRLIFLVFFGKPREPEELPH-AHE 446
Query: 484 SPLVMQIPLFILAIGSIFFGFIFHDVFFGSAYSSFWKGALFASSSNNVLERYHEVPLWVE 543
+P VM +PL +LAI S+ G + F A + + LW
Sbjct: 447 APWVMLLPLVVLAILSLILGLLILAPFLFPAVF--------------AADELLHLALWHG 492
Query: 544 YS-SFIAFFVGFFSAFLMYIICPSLPKFLSEKCRFFYCFLQNAWYFDRIYDCLLVRPIVR 602
+ + VG L+Y+ Y L N +Y D++Y + V+ +
Sbjct: 493 LNLPLLLSIVGIVLGILLYLKPILKK--SILGLFGLYTLLYNDYYLDKLYTLVFVKTVAL 550
Query: 603 LATILWKRVDLSIDKYGPGGIVACVRYLSSYSSRLQTGYLDHYAFSMLIGISILVIV 659
LA LW DL+ G + + + R QTGYL YA S+++G +L+I+
Sbjct: 551 LAGRLWDYFDLTFID-GIVNLGRVTLFSGNGLRRSQTGYLQLYALSLVVGALLLLIL 606
>gnl|CDD|164604 MTH00032, ND5, NADH dehydrogenase subunit 5; Provisional.
Length = 669
Score = 423 bits (1088), Expect = e-119
Identities = 277/703 (39%), Positives = 382/703 (54%), Gaps = 76/703 (10%)
Query: 4 IYEVIVFLPLIGAVFSGFFGRLMGKQFADIFTSLLMVIGAFLSWYVFYEIGFGHDVQVVK 63
+Y +++ LP I A GFFGRL+G + I +++ M ++ ++ YE+ VV
Sbjct: 1 MYLLVLLLPFINAFLLGFFGRLIGTIGSGILSTICMGSSTLIALFLAYEVLIND--AVVH 58
Query: 64 REIFPWIIFDGLDIPWGLRIDTLSSVMFVVVNSISAVVHIYSIGYMHDDPHRPRFFSYLS 123
E++ WI + GL DTLS M +V++SIS +VHIYS YM DDPH PRF YLS
Sbjct: 59 IELYKWIESEIFITHIGLLYDTLSVTMLLVISSISTLVHIYSTSYMSDDPHVPRFLCYLS 118
Query: 124 FFTFAMLVLVSSDNLLQMFFGWEGVGLASYLLIGFWSFKESAIKASMKAFVVNRIGDLGL 183
FTF M+VLV+SDN LQ+F GWEGVG+ SYLL+ FW+ + A KA++KA VVNR+GD+G+
Sbjct: 119 LFTFLMMVLVTSDNYLQLFIGWEGVGVCSYLLVAFWTTRIQANKAAIKAIVVNRVGDVGV 178
Query: 184 ILAISAIIYLFHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSIAIIC 243
IL + I S+DF G SV SG++ R + G P AII
Sbjct: 179 ILGMVLIYKTIGSLDFLTFN---------GGSVGSGIMD-RGYYGGGAYESPLAPFAIIG 228
Query: 244 LLFFLGAMGKSAQLLLHVWLPDAMEGPTPVSALIHAATMVTAGVFLVARMSPLFELSPFV 303
+L +G +GKSAQL LH WLPDAMEGPTPVSALIHAATMVTAGVFL+ R PLFE +P
Sbjct: 229 ILLLIGCIGKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLMIRSFPLFEKAPLT 288
Query: 304 LDCITVLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVALGCR-AYGASIFHLFTH 362
L IT+ G +TAFFAATVGLVQ+D+K+VIAYSTCSQLGYM + +G ++ +FHL H
Sbjct: 289 LLIITIFGALTAFFAATVGLVQNDLKKVIAYSTCSQLGYMVLIIGIEGSHNVGLFHLVNH 348
Query: 363 AFFKALLFLGSGSVIHAVA-GEQDMRRMGGLYPHLPRTCWMMIVGTLALTGFGIPETSIG 421
AFFKALLFL +GSVIH+ EQDMR+MGGL +P T MM++G+ ++ G
Sbjct: 349 AFFKALLFLSAGSVIHSTTVDEQDMRKMGGLIHSIPFTYTMMLIGSFSIMGLPY------ 402
Query: 422 FSGFFSKDIILEVAY------------------------------------TSSHFTFVF 445
+GF+SKD+ILE+ Y S F F
Sbjct: 403 LTGFYSKDLILELTYSGRNMGIPFGSSLLKIQGDIGIKKDDRGSIGGPEGYPSRGSAFAF 462
Query: 446 FLLLFAAFLTSFYSWRLMFLTFFGKMRVDKD--ISHKIHESPLVMQIPLFILAIGSIFFG 503
+L AA LT+FYS RL+++TF K+ IS I+ + L +L G+IF G
Sbjct: 463 WLGTVAALLTAFYSIRLVYITFIISPNSPKESLISSHINIVDKRVLTVLSLLCFGAIFVG 522
Query: 504 FIFHDVFFGSAYSSFWKGALFASSSNNVLERYHEVPLWVEYSSFIAFFVGFFSAFLMYII 563
++ D+ G + + L + + + GF +++
Sbjct: 523 YLIQDILIGDIEHPIVPPLIKVMPTLMGLFGMGLCLWAQKGTREGELYWGFDPIGPSFLL 582
Query: 564 CPSLPKFLSEKCRFFYCFLQNAWYFDRIYDCLLVRPIVRLATI-LWKRVDLS-IDKYGPG 621
Y FL AW D + + L+ P+ ++K +D ++ +GP
Sbjct: 583 S-------------IYSFLGGAWQGDHLINKLVAIPLFSFGHWGIYKTLDRGWLELFGPQ 629
Query: 622 GIVACVRYLSSYSSRLQTGYLDHYAFSMLIGISILVIVMLLQG 664
GI +S + S LQ+G + YA L+ +S +I + L G
Sbjct: 630 GISTIALRVSQFISNLQSGVISRYA---LVLLSFTIIFLALWG 669
>gnl|CDD|176967 CHL00025, ndhF, NADH dehydrogenase subunit 5.
Length = 741
Score = 378 bits (974), Expect = e-105
Identities = 203/503 (40%), Positives = 280/503 (55%), Gaps = 47/503 (9%)
Query: 1 MAMIYE---VIVFLPLIGAVFSG---FFGRLMGKQFADI---FTSLLMVIGAFLSWYVFY 51
M Y+ +I FLPL + G K + + LL+ I S +
Sbjct: 1 MEHTYQYAWIIPFLPLPVPMLIGLGLLLFPTATKNLRRMWAFPSILLLSIVMIFSLNLSI 60
Query: 52 EIGFGHDVQVVKREIFPWIIFDGLDIPWGLRIDTLSSVMFVVVNSISAVVHIYSIGYMHD 111
+ G + + ++ W I + + +G ID L+S+M +++ ++ +V IYS YM
Sbjct: 61 QQINGSSIY---QYLWSWTINNDFSLEFGYLIDPLTSIMLILITTVGILVLIYSDNYMSH 117
Query: 112 DPHRPRFFSYLSFFTFAMLVLVSSDNLLQMFFGWEGVGLASYLLIGFWSFKESAIKASMK 171
D RFF+YLSFF +ML LV+S NL+Q++ WE VG+ SYLLIGFW + A A K
Sbjct: 118 DQGYLRFFAYLSFFNTSMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPIAANACQK 177
Query: 172 AFVVNRIGDLGLILAISAIIYLFHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGI 231
AFV NR+GD GL+L I ++ S +F +F+ N + + V+ F
Sbjct: 178 AFVTNRVGDFGLLLGILGFYWITGSFEFRDLFE------IFNNLIYNNEVN----LLFAT 227
Query: 232 DVHPHDSIAIICLLFFLGAMGKSAQLLLHVWLPDAMEGPTPVSALIHAATMVTAGVFLVA 291
+ L FLG + KSAQ LHVWLPDAMEGPTP+SALIHAATMV AG+FLVA
Sbjct: 228 ---------LCAFLLFLGPVAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFLVA 278
Query: 292 RMSPLFELSPFVLDCITVLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVALGCRA 351
R+ PLF + P++++ I+++G ITA AT+ L Q DIKR +AYST SQLGYM +ALG +
Sbjct: 279 RLLPLFIVIPYIMNLISLIGIITALLGATLALAQKDIKRGLAYSTMSQLGYMMLALGIGS 338
Query: 352 YGASIFHLFTHAFFKALLFLGSGSVIH---AVAG-----EQDMRRMGGLYPHLPRTCWMM 403
Y A++FHL THA+ KALLFLGSGSVIH + G Q+M MGGL ++P T
Sbjct: 339 YRAALFHLITHAYSKALLFLGSGSVIHSMEPIVGYSPDKSQNMVLMGGLRKYMPITKTTF 398
Query: 404 IVGTLALTGFGIPETSIGFSGFFSKDIILEVAYTSSHFTFVFFLLLFAAFLTSFYSWRLM 463
++GTL+L GIP + F+SKD IL ++ S + A LT+FY +R+
Sbjct: 399 LLGTLSLC--GIPP----LACFWSKDEILNDSWLYS--PIFAIIAWSTAGLTAFYMFRIY 450
Query: 464 FLTFFGKMRVDKDISHKIHESPL 486
LTF G +RV S
Sbjct: 451 LLTFEGHLRVHFQNYSGKKNSSF 473
Score = 47.6 bits (114), Expect = 1e-05
Identities = 49/204 (24%), Positives = 74/204 (36%), Gaps = 33/204 (16%)
Query: 482 HESPLVMQIPLFILAIGSIFFGFI---FHDVFFGSAYSSFW---KGALFASSSNNVLERY 535
HES M PL +L + ++F GFI F+ S W L +SNN ++ Y
Sbjct: 537 HESDNTMLFPLLVLVLFTLFVGFIGIPFNQEGIDLDILSKWLTPSINLLHQNSNNSVDWY 596
Query: 536 HEVPLWVEYSSFIAFFVGFFSAFLMY---------------IICPSLPKFLSEKCR-FFY 579
E +S IAFF G F A +Y + + +K Y
Sbjct: 597 -EFLTNAIFSVSIAFF-GIFIASFLYGPVYSSLQNLDLINSFVKGGPKRIFLDKIINVIY 654
Query: 580 CFLQNAWYFDRIYDCLLVRPIVRLATILWKRVDLSIDKYGPGGIVACVRYLSSYSSR--- 636
+ N Y D Y ++ I LA + D+ GI V S +
Sbjct: 655 NWSYNRGYIDAFYTISFIKGIRGLAELT-----HFFDRRVIDGITNGVGITSFFVGEGIK 709
Query: 637 -LQTGYLDHYAFSMLIGISILVIV 659
+ G + Y F L +SI +++
Sbjct: 710 YVGGGRISSYLFLYLFYVSIFLLI 733
>gnl|CDD|177100 MTH00004, ND5, NADH dehydrogenase subunit 5; Validated.
Length = 602
Score = 356 bits (917), Expect = 9e-99
Identities = 178/445 (40%), Positives = 247/445 (55%), Gaps = 50/445 (11%)
Query: 67 FPWIIFDGLDIPWGLRIDTLSSVMFV-----VVNSISAVVHIYSIGYMHDDPHRPRFFSY 121
+PWI +IP ++D S +MF+ V SI +S YM DPH +FF Y
Sbjct: 66 WPWIFTTTFNIPISFKLDQYS-LMFLPIALFVTWSILE----FSTWYMASDPHITKFFKY 120
Query: 122 LSFFTFAMLVLVSSDNLLQMFFGWEGVGLASYLLIGFWSFKESAIKASMKAFVVNRIGDL 181
L F AML+L++++N+ Q+F GWEGVG+ S+LLIG+WS + A A+++A + NRIGD+
Sbjct: 121 LLIFLIAMLILITANNMFQLFIGWEGVGIMSFLLIGWWSGRAEANTAALQAIIYNRIGDI 180
Query: 182 GLILAISAIIYLFHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSIAI 241
GLIL+++ + ++ + +F P + +
Sbjct: 181 GLILSMAWLAMTLNTWEIQQLF------------------------------SPTQTPTL 210
Query: 242 ICLLFFLGAMGKSAQLLLHVWLPDAMEGPTPVSALIHAATMVTAGVFLVARMSPLFELSP 301
L L A GKSAQ LH WLP AMEGPTPVSAL+H++TMV AG+FL+ R PL + +
Sbjct: 211 PLLGLILAATGKSAQFGLHPWLPAAMEGPTPVSALLHSSTMVVAGIFLLIRTHPLLQNNQ 270
Query: 302 FVLDCITVLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVALGCRAYGASIFHLFT 361
L LG +T FAAT L Q+DIK++IA+ST SQLG M V +G + H+ T
Sbjct: 271 TALTICLCLGALTTLFAATCALTQNDIKKIIAFSTSSQLGLMMVTIGLNQPQLAFLHIST 330
Query: 362 HAFFKALLFLGSGSVIHAVAGEQDMRRMGGLYPHLPRTCWMMIVGTLALTGFGIPETSIG 421
HAFFKA+LFL SGS+IH + EQD+R+MGGL LP T + +G LAL G P
Sbjct: 331 HAFFKAMLFLCSGSIIHNLNNEQDIRKMGGLQKTLPITSSCLTIGNLALM--GTP----- 383
Query: 422 F-SGFFSKDIILEVAYTSSHFTFVFFLLLFAAFLTSFYSWRLMFLTFFGKMRVDKDISHK 480
F SGF+SKD I+E TS + L L A T+ YS R++ L G R +
Sbjct: 384 FLSGFYSKDTIIETLNTSYLNAWALLLTLLATSFTAAYSLRMILLVQTGFPRT-PPTTPI 442
Query: 481 IHESPLVMQIPLFILAIGSIFFGFI 505
+P ++ P+ LA+GSI G +
Sbjct: 443 NENTPTIIN-PITRLALGSILAGLL 466
>gnl|CDD|177251 MTH00208, ND5, NADH dehydrogenase subunit 5; Provisional.
Length = 628
Score = 351 bits (904), Expect = 2e-97
Identities = 218/636 (34%), Positives = 306/636 (48%), Gaps = 70/636 (11%)
Query: 33 IFTSLLMVIGAFLSWYVFYEIGFGHDVQVVKREIFPWIIFDGLDIPWGLRIDTLSSVMFV 92
SLL + AFLS I + + W+ + D + F
Sbjct: 57 FSISLLKTL-AFLSLINLL-IWILLGCPNINISLSNWLSNTLFNFSLSFIFDFYFILFFS 114
Query: 93 VVNSISAVVHIYSIGYMHDDPHRPRFFSYLSFFTFAMLVLVSSDNLLQMFFGWEGVGLAS 152
V ++ + +S YM +DP++ FF L F ML+L SS+NL +F GWEGVG S
Sbjct: 115 VALFVTWSIIEFSHYYMSNDPNKNAFFRLLIIFLLNMLILTSSNNLFLLFIGWEGVGFLS 174
Query: 153 YLLIGFWSFKESAIKASMKAFVVNRIGDLGLILAISAIIYLFHSVDFDAVFQNASHYWKI 212
+LLI +W+ + A ++++A + NRIGD+G+IL +S + F+S W +
Sbjct: 175 FLLISWWTTRNDANSSALQAVIYNRIGDIGIILFLSLSLINFNS-------------WNL 221
Query: 213 GNSVSSGMVSHRSFSFFGIDVHPHDSIAIICLLFFLGAMGKSAQLLLHVWLPDAMEGPTP 272
N + S S+ + I+ L A GKSAQ LH WLP AMEGPTP
Sbjct: 222 -NEILSLNNSNSFLINILL-------FGIL-----LAAAGKSAQFGLHPWLPAAMEGPTP 268
Query: 273 VSALIHAATMVTAGVFLVARMSPLFELSPFVLDCITVLGCITAFFAATVGLVQHDIKRVI 332
VSAL+H++TMV AGVFL+ R SPL SP+ L +LG +TA FAA+ + QHDIK++I
Sbjct: 269 VSALLHSSTMVVAGVFLLIRTSPLISNSPWFLSLCLILGSLTALFAASTAISQHDIKKII 328
Query: 333 AYSTCSQLGYMFVALGCRAYGASIFHLFTHAFFKALLFLGSGSVIHAVAGEQDMRRMGGL 392
AYST SQLG M VA+G ++FH+ THAFFKA+LFL SGS+IH++ EQD+R+MGGL
Sbjct: 329 AYSTTSQLGLMVVAIGLNQPNLALFHICTHAFFKAMLFLCSGSIIHSLNNEQDLRKMGGL 388
Query: 393 YPHLPRTCWMMIVGTLALTGFGIPETSIGFSGFFSKDIILEVAYTSSHFTFVFFLLLFAA 452
LP T +I+G+LAL G +GF+SKD+ILE S L L A
Sbjct: 389 SFLLPVTSSCIILGSLALMGTPF------LAGFYSKDLILEAGLASISNLLSIILALIAT 442
Query: 453 FLTSFYSWRLMFLTFFGKMRVDKDISHKIHESPLVMQIPLFILAIGSIFFGFIFHDVFFG 512
LT+ YS+R++F F I E + PL LAIG+I G+ F
Sbjct: 443 LLTAVYSFRIIFFCFLNNPSFSP--LSPISEENPNLTNPLLRLAIGTIISGWFF------ 494
Query: 513 SAYSSFWKGALFASSSNNVLERYHEVPLWVEYSSFIAFFVGFFSAFLMYIICPSLPKFLS 572
SN V + S + V A + SL
Sbjct: 495 ---------------SNFVFNLPPLTLPLILKS--LPLIVTIIGAAFSFSFLLSLSSNPI 537
Query: 573 EKCRFFYCFLQNAWYFDRIYDCLLVRPIVRLATILWKRVDLSIDK-----YGPGGIVACV 627
F+ FL N W+F I +++ + R ++D+ GP GI
Sbjct: 538 NS--NFFSFLSNQWFFVNISHSIIISFSFFTSLFGSTR---TLDRGWSENIGPQGIGNTS 592
Query: 628 RYLSSYSSRLQTGYLDHY-AFSMLIGISILVIVMLL 662
LS QTGY+ Y S L+ + IL + +++
Sbjct: 593 STLSKSYQLTQTGYIKQYLLSSTLLFLLILTLSLII 628
>gnl|CDD|177254 MTH00211, ND5, NADH dehydrogenase subunit 5; Provisional.
Length = 597
Score = 348 bits (895), Expect = 3e-96
Identities = 202/644 (31%), Positives = 306/644 (47%), Gaps = 66/644 (10%)
Query: 21 FFGRLMGKQFADIFTSLLMVIGAFLSWYVFYEIGFGHDVQVVKREIFPWIIFDGLDIPWG 80
L+ + + + + F+S ++ + WI +
Sbjct: 17 LLPLLLPLNNSKLHIKKAVKLSFFISLIPLLIFLDQGLETILTN--WSWINLGLFSLNLS 74
Query: 81 LRIDTLSSVMFVVVNSISAVVHIYSIGYMHDDPHRPRFFSYLSFFTFAMLVLVSSDNLLQ 140
+ D S V ++ + +S+ YM +P+ RFF YL F ML+LVS++NL Q
Sbjct: 75 FKFDFYSIFFTSVALYVTWSILEFSLWYMSSEPNINRFFKYLLLFLIFMLILVSANNLFQ 134
Query: 141 MFFGWEGVGLASYLLIGFWSFKESAIKASMKAFVVNRIGDLGLILAISAIIYLFHSVDFD 200
+F GWEGVG+ S+LLI +W + A A+++A + NRIGD+GL+L++ ++ +S +
Sbjct: 135 LFIGWEGVGIMSFLLISWWYGRSDANTAALQAVIYNRIGDIGLLLSMVWLLLNLNSWEIS 194
Query: 201 AVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSIAIICLLFFLGAMGKSAQLLLH 260
+F + L L AMGKSAQ H
Sbjct: 195 QLFILNLDLT------------------------------LFLLGLLLAAMGKSAQFGFH 224
Query: 261 VWLPDAMEGPTPVSALIHAATMVTAGVFLVARMSPLFELSPFVLDCITVLGCITAFFAAT 320
WLP AMEGPTPVSAL+H++TMV AGVFL+ R+SPLF+ + +L + +LG +T F A
Sbjct: 225 PWLPSAMEGPTPVSALLHSSTMVVAGVFLLIRLSPLFQNNQLILGAVLLLGALTMLFGAL 284
Query: 321 VGLVQHDIKRVIAYSTCSQLGYMFVALGCRAYGASIFHLFTHAFFKALLFLGSGSVIHAV 380
L Q+DIK+++A+ST SQLG M V LG + H+ THAFFKA+LF+ SGS+IH +
Sbjct: 285 CALTQNDIKKIVAFSTTSQLGLMMVTLGLNQPQLAFLHICTHAFFKAMLFMCSGSIIHGL 344
Query: 381 AGEQDMRRMGGLYPHLPRTCWMMIVGTLALTGFGIPETSIGFSGFFSKDIILEVAYTSSH 440
EQD+R+MGGL +LP T + +G+LAL GF SGFFSKD+ILE S
Sbjct: 345 NNEQDIRKMGGLSKNLPFTSSCLFLGSLALMGFPF------LSGFFSKDLILESMNGSYL 398
Query: 441 FTFVFFLLLFAAFLTSFYSWRLMFLTFFGKMRVDKDISHKIHESPLVMQIPLFILAIGSI 500
+ L L A LT+ YS+RL+FL+ G R I+E+ +++ PL LA+GSI
Sbjct: 399 NAWALLLTLLATSLTAAYSFRLIFLSLGGYPRFLSLS--PINENYKLLKNPLKRLALGSI 456
Query: 501 FFGFIFHDVFFGSAYSSFWKGALFASSSNNVLERYHEVPLWVEYSSFIAFFVGFFSAFLM 560
GFI +P ++ + VG +
Sbjct: 457 LAGFIITSNLPPEKPEILS------------------LPFLLKLMPLLVTIVGLLLGLEL 498
Query: 561 YIICPSLPKFLSEKCRFFYCFLQNAWYFDRIYDCLLVRPIVRLA-TILWKRVDLS-IDKY 618
K F Y+ I LL + ++ T+ +DL +K
Sbjct: 499 -----VNLTHKQLKTSTLS-FSNMLGYYPPIIHRLLPKLSLKWGQTLSTHLMDLGWYEKL 552
Query: 619 GPGGIVACVRYLSSYSSRLQTGYLDHYAFSMLIGISILVIVMLL 662
GP G+ + L + Q G + Y +L+ + +++++ LL
Sbjct: 553 GPKGLGVNQKKLIKLVTSPQQGLIKSYLALLLLSLLLILLLFLL 596
>gnl|CDD|177138 MTH00066, ND5, NADH dehydrogenase subunit 5; Provisional.
Length = 598
Score = 329 bits (845), Expect = 2e-90
Identities = 170/439 (38%), Positives = 248/439 (56%), Gaps = 38/439 (8%)
Query: 67 FPWIIFDGLDIPWGLRIDTLSSVMFVVVNSISAVVHIYSIGYMHDDPHRPRFFSYLSFFT 126
F W+ +I + D S + + ++ + ++I YMH DP RFF YL F
Sbjct: 64 FHWMNIFNFNINSSFKFDQYSIIFLPIALFVTWSILEFAIWYMHSDPKINRFFKYLLIFL 123
Query: 127 FAMLVLVSSDNLLQMFFGWEGVGLASYLLIGFWSFKESAIKASMKAFVVNRIGDLGLILA 186
AM++LV+++NL Q+F GWEGVG+ S+LLIG+W + A A+++A + NR+GD+GLIL+
Sbjct: 124 IAMMILVTANNLFQLFIGWEGVGIMSFLLIGWWHARADANTAALQAVLYNRVGDIGLILS 183
Query: 187 ISAIIYLFHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSIAIICLLF 246
++ + +S + +F +++ S + L
Sbjct: 184 MAWLAMNTNSWELQQIF----------------LLNDNST--------------LPLLGL 213
Query: 247 FLGAMGKSAQLLLHVWLPDAMEGPTPVSALIHAATMVTAGVFLVARMSPLFELSPFVLDC 306
L A GKSAQ LH WLP AMEGPTPVSAL+H++TMV AG+FL+ R PL E + L
Sbjct: 214 ILAAAGKSAQFGLHPWLPAAMEGPTPVSALLHSSTMVVAGIFLLIRFHPLLENNQTALTI 273
Query: 307 ITVLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVALGCRAYGASIFHLFTHAFFK 366
LG +T F A L Q+DIK+++A+ST SQLG M V +G + FH+ THAFFK
Sbjct: 274 CLCLGALTTLFTAACALTQNDIKKIVAFSTSSQLGLMMVTIGLNQPQLAFFHICTHAFFK 333
Query: 367 ALLFLGSGSVIHAVAGEQDMRRMGGLYPHLPRTCWMMIVGTLALTGFGIPETSIGFSGFF 426
A+LFL SGS+IH++ EQD+R+MGGL LP T + +G+LALT G P +GFF
Sbjct: 334 AMLFLCSGSIIHSLNDEQDIRKMGGLQKALPITTSCLTIGSLALT--GTPF----LAGFF 387
Query: 427 SKDIILEVAYTSSHFTFVFFLLLFAAFLTSFYSWRLMFLTFFGKMRVDKDISHKIHESPL 486
SKD I+E TS+ ++ L L A T+ YS+R+++ + R I+E+
Sbjct: 388 SKDAIIEAMNTSNLNSWALILTLIATSFTAVYSFRIIYFSSMKFPRSLPLSP--INENNP 445
Query: 487 VMQIPLFILAIGSIFFGFI 505
++ P+ LA GSI G +
Sbjct: 446 LIINPIKRLAWGSIIAGLL 464
>gnl|CDD|177170 MTH00108, ND5, NADH dehydrogenase subunit 5; Provisional.
Length = 602
Score = 324 bits (834), Expect = 4e-89
Identities = 174/404 (43%), Positives = 245/404 (60%), Gaps = 41/404 (10%)
Query: 104 YSIGYMHDDPHRPRFFSYLSFFTFAMLVLVSSDNLLQMFFGWEGVGLASYLLIGFWSFKE 163
+S+ YMH DP+ RFF YL F ML+LV+++NL Q+F GWEGVG+ S+LLIG+W +
Sbjct: 103 FSMWYMHSDPNINRFFKYLLLFLITMLILVTANNLFQLFIGWEGVGIMSFLLIGWWYGRT 162
Query: 164 SAIKASMKAFVVNRIGDLGLILAISAIIYLFHSVDFDAVFQNASHYWKIGNSVSSGMVSH 223
A A+++A + NRIGD+G ILA++ + +S D +F
Sbjct: 163 DANTAALQAILYNRIGDIGFILAMAWFLLNLNSWDLQQIF-------------------- 202
Query: 224 RSFSFFGIDVHPHDSIAIICLLFFLGAMGKSAQLLLHVWLPDAMEGPTPVSALIHAATMV 283
+ + ++ ++ LL L A GKSAQ LH WLP AMEGPTPVSAL+H++TMV
Sbjct: 203 -------MLNPNNSNLPLMGLL--LAATGKSAQFGLHPWLPSAMEGPTPVSALLHSSTMV 253
Query: 284 TAGVFLVARMSPLFELSPFVLDCITVLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYM 343
AGVFL+ R PL E + + LG IT F A L Q+DIK+++A+ST SQLG M
Sbjct: 254 VAGVFLLIRFHPLMENNKTIQTLTLCLGAITTLFTAICALTQNDIKKIVAFSTSSQLGLM 313
Query: 344 FVALGCRAYGASIFHLFTHAFFKALLFLGSGSVIHAVAGEQDMRRMGGLYPHLPRTCWMM 403
V +G + H+ THAFFKA+LF+ SGS+IH + EQD+R+MGGL+ LP T +
Sbjct: 314 MVTIGINQPHLAFLHICTHAFFKAMLFMCSGSIIHNLNDEQDIRKMGGLFKTLPFTSTAL 373
Query: 404 IVGTLALTGFGIPETSIGF-SGFFSKDIILEVAYTSSHFTFVFFLLLFAAFLTSFYSWRL 462
I+G+LALT G+P F +GF+SKD+I+E A TS + + L A LT+ YS R+
Sbjct: 374 IIGSLALT--GMP-----FLTGFYSKDLIIEAANTSYTNAWALLITLIATSLTAAYSTRI 426
Query: 463 MFLTFFGKMRVDKDISHKIHE-SPLVMQIPLFILAIGSIFFGFI 505
+F G+ R I+ I+E +PL++ P+ L +GSIF GF+
Sbjct: 427 IFFALLGQPRFPPLIT--INENNPLLIN-PIKRLLLGSIFAGFL 467
>gnl|CDD|177195 MTH00137, ND5, NADH dehydrogenase subunit 5; Provisional.
Length = 611
Score = 310 bits (798), Expect = 5e-85
Identities = 170/401 (42%), Positives = 241/401 (60%), Gaps = 42/401 (10%)
Query: 108 YMHDDPHRPRFFSYLSFFTFAMLVLVSSDNLLQMFFGWEGVGLASYLLIGFWSFKESAIK 167
YMH DP+ RFF YL F AM++LV+++N+ Q+F GWEGVG+ S+LLIG+W + A
Sbjct: 111 YMHADPNMNRFFKYLLIFLIAMIILVTANNMFQLFIGWEGVGIMSFLLIGWWYGRADANT 170
Query: 168 ASMKAFVVNRIGDLGLILAISAIIYLFHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFS 227
A+++A + NR+GD+GLILA++ + +S + +F ++S
Sbjct: 171 AALQAVIYNRVGDIGLILAMAWMATNLNSWEIQQIF-----------ALSKDF------- 212
Query: 228 FFGIDVHPHDSIAIICLLFFLGAMGKSAQLLLHVWLPDAMEGPTPVSALIHAATMVTAGV 287
D+ ++ ++ L+ L A GKSAQ LH WLP AMEGPTPVSAL+H++TMV AG+
Sbjct: 213 ----DL----TLPLLGLI--LAATGKSAQFGLHPWLPSAMEGPTPVSALLHSSTMVVAGI 262
Query: 288 FLVARMSPLFELSPFVLDCITVLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVAL 347
FL+ R+SPL E + L LG +T F AT L Q+DIK+++A+ST SQLG M V +
Sbjct: 263 FLLIRLSPLMENNQTALTTCLCLGALTTLFTATCALTQNDIKKIVAFSTSSQLGLMMVTI 322
Query: 348 GCRAYGASIFHLFTHAFFKALLFLGSGSVIHAVAGEQDMRRMGGLYPHLPRTCWMMIVGT 407
G + H+ THAFFKA+LFL SGS+IH++ EQD+R+MGGL+ P T + +G+
Sbjct: 323 GLNQPQLAFLHICTHAFFKAMLFLCSGSIIHSLNDEQDIRKMGGLHHLTPFTSSCLTIGS 382
Query: 408 LALTG--FGIPETSIGFSGFFSKDIILEVAYTSSHFTFVFFLLLFAAFLTSFYSWRLMFL 465
LALTG F +GFFSKD I+E TS + L L A T+ YS R++F
Sbjct: 383 LALTGTPF--------LAGFFSKDAIIEALNTSHLNAWALTLTLIATSFTAVYSLRVVFF 434
Query: 466 TFFGKMRVDKDISHKIHE-SPLVMQIPLFILAIGSIFFGFI 505
G R + +S I+E +P V+ P+ LA GSI G +
Sbjct: 435 VSMGHPRFNP-LSP-INENNPAVIN-PIKRLAWGSIIAGLL 472
>gnl|CDD|177220 MTH00165, ND5, NADH dehydrogenase subunit 5; Provisional.
Length = 573
Score = 254 bits (651), Expect = 7e-68
Identities = 175/579 (30%), Positives = 276/579 (47%), Gaps = 68/579 (11%)
Query: 86 LSSVMFVVVNSISAVVHIYSIGYMHDDPHRPRFFSYLSFFTFAMLVLVSSDNLLQMFFGW 145
+S V+F IS++V YS YM D + RF + F +M++L+ S NL+ + GW
Sbjct: 60 MSFVLF-----ISSMVIYYSKSYMSGDKNINRFIYLVLLFVLSMMLLIISPNLISILLGW 114
Query: 146 EGVGLASYLLIGFWSFKESAIKASMKAFVVNRIGDLGLILAISAIIYLFHSVDFDAVFQN 205
+G+GL SY L+ ++ K+S A M + NRIGD+ ++L+I+
Sbjct: 115 DGLGLVSYCLVIYYQNKKSY-NAGMLTALSNRIGDVAILLSIAW---------------- 157
Query: 206 ASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSIA--IICLLFFLGAMGKSAQLLLHVWL 263
M++ S++F +S +I LL L AM KSAQ+ WL
Sbjct: 158 --------------MMNFGSWNFIFYLDFMKNSFEMLLIGLLIMLAAMTKSAQIPFSSWL 203
Query: 264 PDAMEGPTPVSALIHAATMVTAGVFLVARMSPLFELSPFVLDCITVLGCITAFFAATVGL 323
P AM PTPVSAL+H++T+VTAGV+L+ R + L S F + ++ +T F A
Sbjct: 204 PAAMAAPTPVSALVHSSTLVTAGVYLLIRFNNLL-FSSFFSKFLLLISLLTMFMAGLGAN 262
Query: 324 VQHDIKRVIAYSTCSQLGYMFVALGCRAYGASIFHLFTHAFFKALLFLGSGSVIHAVAGE 383
+ D+K++IA ST SQLG M L + FHL THA FKALLFL +GS+IH ++
Sbjct: 263 FEFDLKKIIALSTLSQLGLMMSILSLGFPKLAFFHLLTHALFKALLFLCAGSIIHNMSNS 322
Query: 384 QDMRRMGGLYPHLPRTCWMMIVGTLALTGFGIPETSIGFSGFFSKDIILEVAYTSSHFTF 443
QD+R MGGL +P T + L+L GF SGF+SKD+ILE+ S+ F
Sbjct: 323 QDIRFMGGLSNFMPLTSSCFNISNLSLCGFPF------LSGFYSKDLILEMVSMSNLNFF 376
Query: 444 VFFLLLFAAFLTSFYSWRLMFLTFFGKMRVDKDISHKIHESPLVMQIPLFILAIGSIFFG 503
+FFL F+ LT YS+RL++ + G + + + + M + +L SIF G
Sbjct: 377 IFFLFFFSTGLTVSYSFRLIYYSMSGDF--NLKSLNNLSDESKFMLKSMILLLFMSIFGG 434
Query: 504 FIFHDVFFGSAYSSFWKGALFASSSNNVLERYHEVPLWVEYSSFIAFFVGFFSAFLMYII 563
+ + F Y +P +++ + +G + + + ++
Sbjct: 435 SMLSWLIFPEPYMIC-------------------LPFYLKLLTLFVILLGGWLGYELSLM 475
Query: 564 CPSLPKFLSEKCRFFYCFLQNAWYFDRIYDCLLVRPIVRLATILWKRVDLS-IDKYGPGG 622
S S K FL + W+ + + + L ++ K D + +G G
Sbjct: 476 SLS-YNLKSLKNYKLSSFLGSMWFMPFLSTYGISYYPLNLGSLSLKSFDQGWSEYFGGQG 534
Query: 623 IVACVRYLSSYSSRLQTGYLDHYAFSMLIGISILVIVML 661
+ ++ LS LQ L Y S L+ + IL+++ L
Sbjct: 535 LYNFLKKLSKLIQWLQNNNLKIYLLSFLLWMIILLLLFL 573
>gnl|CDD|177208 MTH00151, ND5, NADH dehydrogenase subunit 5; Provisional.
Length = 565
Score = 246 bits (631), Expect = 1e-65
Identities = 145/427 (33%), Positives = 220/427 (51%), Gaps = 44/427 (10%)
Query: 88 SVMFV-VVNSISAVVHIYSIGYMHDDPHRPRFFSYLSFFTFAMLVLVSSDNLLQMFFGWE 146
S+ F VV IS V ++S YM +DP RF + F +M +L+ +L + GW+
Sbjct: 56 SLSFSGVVCLISGCVFLFSSSYMSEDPFLKRFMWLVMLFVLSMNLLIFIPSLPSLLLGWD 115
Query: 147 GVGLASYLLIGFWSFKESAIKASMKAFVVNRIGDLGLILAISAIIYLFHSVDFDAVFQNA 206
G+G+ S+ L+ ++ K+S + A M + NRIGD+ ++L+I
Sbjct: 116 GLGIVSFALVIYYQNKKS-LSAGMLTALTNRIGDVLILLSI------------------- 155
Query: 207 SHYWKIGNSVSSGMVSHRSFSFFGI-DVHPHDSIAIICLLFFLGAMGKSAQLLLHVWLPD 265
+ +V +S + D + LL L AM KSAQ+ WLP
Sbjct: 156 -----------ALLVLLGHWSILSMWDFKL---SGWLGLLLVLAAMTKSAQIPFSSWLPA 201
Query: 266 AMEGPTPVSALIHAATMVTAGVFLVARMSPLFELSPFVLDCITVLGCITAFFAATVGLVQ 325
AM PTPVSAL+H++T+VTAGVFL+ R P S + + +T A +
Sbjct: 202 AMAAPTPVSALVHSSTLVTAGVFLLIRFFPFLSSSSGFSSFLLFISLLTLLMAGISACYE 261
Query: 326 HDIKRVIAYSTCSQLGYMFVALGCRAYGASIFHLFTHAFFKALLFLGSGSVIHAVAGEQD 385
+D+K++IA ST SQLG M +LG ++FHL+THA FKALLFL +GS+IH+ +G QD
Sbjct: 262 NDLKKIIALSTLSQLGVMMFSLGLGMPSLALFHLYTHALFKALLFLCAGSIIHSSSGTQD 321
Query: 386 MRRMGGLYPHLPRTCWMMIVGTLALTGFGIPETSIGFSGFFSKDIILEVAYTSSHFTFVF 445
+R +G L+ LP T + + +L+L G SGF+SKD+ILE + S +
Sbjct: 322 IRLLGSLFLSLPLTSGCLNISSLSLCGAP------FLSGFYSKDLILESSLMSPTSLLMV 375
Query: 446 FLLLFAAFLTSFYSWRLMFLTFFGKMRVDKDISHKIHESPLVMQIPLFILAIGSIFFGFI 505
L+ LT+ YS RL F +G M+ S K E V +P+ +L++G++ G +
Sbjct: 376 LLMFVGVGLTALYSARLSFCLVWGSMKSSSLSS-KSDEDFYVS-LPMLLLSLGALIGGKL 433
Query: 506 FHDVFFG 512
+F G
Sbjct: 434 LQSLFEG 440
>gnl|CDD|177252 MTH00209, ND5, NADH dehydrogenase subunit 5; Provisional.
Length = 564
Score = 242 bits (620), Expect = 2e-64
Identities = 150/477 (31%), Positives = 243/477 (50%), Gaps = 43/477 (9%)
Query: 37 LLMVIGAFLSWYVFYEIGFGHDVQVVKREIFPWIIFDGLDIPWGLRIDTLSSVMFVVVNS 96
+++ S+ +F + + +++ E+ + + I + L ID +S + VV
Sbjct: 7 FSLMLLFLFSFLMFVIFMWFQKIVILEWELLSL---NSMSISFPLIIDKMSLLFSSVVLL 63
Query: 97 ISAVVHIYSIGYMHDDPHRPRFFSYLSFFTFAMLVLVSSDNLLQMFFGWEGVGLASYLLI 156
IS V +S YM + + RF + F +M L+ NL+ + GW+G+GL SYLL+
Sbjct: 64 ISGSVMWFSTSYMAGEKFKKRFILLVLLFILSMNFLIFVPNLITLLLGWDGLGLVSYLLV 123
Query: 157 GFWSFKESAIKASMKAFVVNRIGDLGLILAISAIIYLFHSVDFDAVFQNASHYWKIGNSV 216
++ +S + A M + NR+GD LIL+I+
Sbjct: 124 IYYQNSKS-LSAGMLTALTNRVGDALLILSIA---------------------------- 154
Query: 217 SSGMVSHRSFSFFGIDVHPHDSIAIICLLFFLGAMGKSAQLLLHVWLPDAMEGPTPVSAL 276
M+ H +++ F ++ + + ++I +L L AM KSAQ+ WLP AM PTPVSAL
Sbjct: 155 --WMLMHGNWNIFYLNFN-SNLGSVISVLIVLAAMTKSAQIPFSAWLPAAMAAPTPVSAL 211
Query: 277 IHAATMVTAGVFLVARMSPLFELSPFVLDCITVLGCITAFFAATVGLVQHDIKRVIAYST 336
+H++T+VTAGV+L+ R P SPF + +LG +T A+ V+ D+K++IA ST
Sbjct: 212 VHSSTLVTAGVYLLIRFFPSLFSSPFFSMSLLLLGSLTTLMASMSANVESDLKKIIALST 271
Query: 337 CSQLGYMFVALGCRAYGASIFHLFTHAFFKALLFLGSGSVIHAVAGEQDMRRMGGLYPHL 396
SQLG M +LG + FHL THA FKALLF+ +G++IH+ QD+R +G L+ +
Sbjct: 272 LSQLGLMMCSLGLNQPELAFFHLITHALFKALLFICAGNIIHSHGHSQDIRMVGNLWYQM 331
Query: 397 PRTCWMMIVGTLALTGFGIPETSIGFSGFFSKDIILEVAYTSSHFTFVFFLLLFAAFLTS 456
P T + + L+L G +GF+SKD+ILE S+ L+ + LT+
Sbjct: 332 PITSICLNIANLSLCGIPF------LAGFYSKDLILESMLESNMPIMTLILMFLSTSLTA 385
Query: 457 FYSWRLMFLTFFGKMRVDKDISHKIHESPLVMQIPLFILAIGSIFFGFIFHDVFFGS 513
YS RL + + +G K ++ ++ L P+ +L +GSI G + V S
Sbjct: 386 AYSMRLSYFSLWGPNSS-KSLNSSFDQNKL-NLKPMLVLTLGSITGGSVMSWVMVPS 440
>gnl|CDD|164753 MTH00207, ND5, NADH dehydrogenase subunit 5; Provisional.
Length = 572
Score = 206 bits (526), Expect = 2e-53
Identities = 138/419 (32%), Positives = 216/419 (51%), Gaps = 50/419 (11%)
Query: 87 SSVMFVVVNSISAVVHIYSIGYMHDDPHRPRFFSYLSFFTFAMLVLVSSDNLLQMFFGWE 146
S+V+F ISA V +++ YM +D RF S + F +M +L+ +L+ + GW+
Sbjct: 64 STVLF-----ISANVLLFAKTYMQEDKFLSRFISLVLLFVLSMNMLIFFPHLMILLLGWD 118
Query: 147 GVGLASYLLIGFWSFKESAIKASMKAFVVNRIGDLGLILAISAIIYLFHSVDFDAVFQNA 206
G+GL S++L+ ++ +S + A M + NRIGD+ L+L+I + N
Sbjct: 119 GLGLVSFILVIYYQNPKS-LGAGMITALTNRIGDVMLLLSIGWTL-------------NQ 164
Query: 207 SHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSIAIICLLFFLGAMGKSAQLLLHVWLPDA 266
H W I + + D++ + +++I+ + AM KSAQ+ WLP A
Sbjct: 165 GH-WSI-------------TNMWQTDMNNYIALSIM-----IAAMTKSAQMPFSSWLPAA 205
Query: 267 MEGPTPVSALIHAATMVTAGVFLVARMSPLFELSPFVLDCITVL--GCITAFFAATVGLV 324
M PTPVSAL+H++T+VTAGVFL+ R P LS +L +T A +
Sbjct: 206 MAAPTPVSALVHSSTLVTAGVFLLIRFYPF--LSSTYWFNPALLLTASLTMLMAGLSAMT 263
Query: 325 QHDIKRVIAYSTCSQLGYMFVALGCRAYGASIFHLFTHAFFKALLFLGSGSVIHAVAGEQ 384
+ D+K++IA ST SQLG M +LG ++FHL THA FKALLF+ +GS+IH+ Q
Sbjct: 264 ECDMKKIIALSTLSQLGVMMASLGLGMPKLALFHLITHALFKALLFVCAGSLIHSHHHSQ 323
Query: 385 DMRRMGGLYPHLPRTCWMMIVGTLALTGFGIPETSIGFSGFFSKDIILEVAYTSSHFTFV 444
D+R MG L +P T +++ LAL G SGF+SKD+ILE + H + +
Sbjct: 324 DLRTMGNLTNQMPLTTSCLLIANLALCGSPF------LSGFYSKDLILESSLFYPHNSLM 377
Query: 445 FFLLLFAAFLTSFYSWRLMFLTFFGKMRVDKDISHKIHESPLVMQIPLFILAIGSIFFG 503
++ A LT+ YS R + H + + + P+ +L +G+I G
Sbjct: 378 ILMIFLATALTAAYSTRFTLAVLWSP--NSSSPYHHLEDEDKSLTTPMLLLTLGAITSG 434
>gnl|CDD|109421 pfam00361, Oxidored_q1, NADH-Ubiquinone/plastoquinone (complex I),
various chains. This family is part of complex I which
catalyses the transfer of two electrons from NADH to
ubiquinone in a reaction that is associated with proton
translocation across the membrane.
Length = 270
Score = 198 bits (506), Expect = 3e-51
Identities = 107/304 (35%), Positives = 160/304 (52%), Gaps = 37/304 (12%)
Query: 135 SDNLLQMFFGWEGVGLASYLLIGFWSFKESAIKASMKAFVVNRIGDLGLILAISAIIYLF 194
S+NLL + GWE +GL SYLLIGFW + +++AS+K F+ +G L L+ I I L
Sbjct: 1 SNNLLLFYLGWELLGLPSYLLIGFWGYSPRSLEASLKYFLYTALGSLFLLFGILYIYGLT 60
Query: 195 HSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSIAIICLLFFLGAMGKS 254
S+ F +F + + ++ LL + + KS
Sbjct: 61 GSLSFTLLFLFGLNSN---------------------------GLLLLSLLLLVAFLVKS 93
Query: 255 AQLLLHVWLPDAMEGPTPVSALIHAATMVTAGVFLVARMSPLFELSPFVLDCITVLGCIT 314
Q H WLPDA EGP PVS+LI A T+ AG++L+ R+S LF S + + +LG ++
Sbjct: 94 PQFPFHFWLPDAHEGPPPVSSLILATTLKKAGLYLLLRLSNLFSSSNLISYILLILGILS 153
Query: 315 AFFAATVGLVQHDIKRVIAYSTCSQLGY-MFVALGCRAYG--ASIFHLFTHAFFKALLFL 371
+ L Q D+K++IAYS+ S +G+ M L +YG +I HL +H FF ALLFL
Sbjct: 154 MLLGSLGALNQTDLKKLIAYSSISHMGFVMMGILSLGSYGIIGAIIHLISHGFFSALLFL 213
Query: 372 GSGSVIHAVAGEQDMRRMGGLYPHLPRTCWMMIVGTLALTGFGIPETSIGFSGFFSKDII 431
+G +IH G +D+R GGL+ +P ++++ L+L G+P GF SK +I
Sbjct: 214 LAGLIIHRS-GTRDLRNYGGLFNSMPILALLLLLLLLSLM--GLP----PLLGFISKFLI 266
Query: 432 LEVA 435
LE
Sbjct: 267 LESL 270
>gnl|CDD|39867 KOG4668, KOG4668, KOG4668, NADH dehydrogenase subunits 2, 5, and
related proteins [Energy production and conversion].
Length = 355
Score = 183 bits (465), Expect = 1e-46
Identities = 142/398 (35%), Positives = 201/398 (50%), Gaps = 50/398 (12%)
Query: 113 PHRPRFFSYLSFFTFAMLVLVSSDNLLQMFFGWEGVGLASYLLIGFWSFKESAIKASMKA 172
+ F Y+ T ML+LV+S+NL+ MF GWEGVGL SYLL+GF + +A+MK
Sbjct: 1 MNINEFIFYILIPTAGMLILVTSNNLITMFVGWEGVGLCSYLLLGFKK-NPRSTEAAMKY 59
Query: 173 FVVNRIGDLGLILAISAIIYLFHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGID 232
F+ NR G L+ IS + + +IGN+ S
Sbjct: 60 FLTNRAGSFILLFGISGLY-----------LSSGLFGNEIGNNEYS-------------- 94
Query: 233 VHPHDSIAIICLLFFLGAMGKSAQLLLHVWLPDAMEGPTPVSALIHAA-TMVTAGVFLVA 291
SI +I LL G GKSAQ H WLPDAMEGPTPVSA + ++ T+V AG+ L
Sbjct: 95 -----SITLIILLIASG--GKSAQAPFHFWLPDAMEGPTPVSATLSSSKTLVIAGLALAV 147
Query: 292 RMSPLFELSPFVLDCITVLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVALGCRA 351
R PL SP + +LG ++ F A L Q DIK+++A+S+ QLGYM +L
Sbjct: 148 RSIPLLCSSPLIQQLKLILGILSMLFGALCALTQTDIKKILAFSSIGQLGYMMFSLKVGM 207
Query: 352 YGASIFHLFTHAFFKALLFLGSGSVIHAVAGEQDMRRMGGLYPHLPRTCWMMIVGTLALT 411
+I HL THA FKALLF+ GS+IH + EQD+R M GL P + +G L+L
Sbjct: 208 SNNAILHLATHALFKALLFMCYGSIIHYLNLEQDIRLMSGLLNLPPLLKLSLFIGLLSLG 267
Query: 412 GFGIPETSIGFSGFFSKDIILEVAYTSSHFTFVFFLLLFAAFLTSFYSWRLMFLTFFGKM 471
G +GF+SKD I+E A+ ++ + +LL + LT +YS+R + F+
Sbjct: 268 GL------PFLAGFYSKDYIIETAFQNNLYALAPTILLTSVLLTLYYSFRTGRMFFYTSN 321
Query: 472 RVDKDISHKIHESPLV----MQIPLFILAIGSIFFGFI 505
SPL + + + +I S+ F+
Sbjct: 322 NW------INKMSPLRLMNNLSLMMTFFSISSLIPNFL 353
>gnl|CDD|30996 COG0651, HyfB, Formate hydrogenlyase subunit 3/Multisubunit Na+/H+
antiporter, MnhD subunit [Energy production and
conversion / Inorganic ion transport and metabolism].
Length = 504
Score = 172 bits (437), Expect = 3e-43
Identities = 134/541 (24%), Positives = 225/541 (41%), Gaps = 51/541 (9%)
Query: 1 MAMIYEVIVFLPLIGAVFSGFFGRLMGKQFADIFTSLLMVIGAFLSWYVFYEIGFGHDVQ 60
M + + + LPL+ A F L + L + LS F E+G
Sbjct: 1 MNNLLLLPIILPLLAAALLLLFLGLRRLKAKRFLALLGALGLLLLSILGFLEVG------ 54
Query: 61 VVKREIFPWIIFDGLDIPWGLRIDTLSSVMFVVVNSISAVVHIYSIGYMHDDPHRPRFFS 120
I L D LS++ +++ + + +YSIGYM + R ++
Sbjct: 55 --GPVGGLGGWLAPFGI--VLAADPLSAIFLLIIALVGLLASLYSIGYMRHEKERAYYYF 110
Query: 121 YLSFFTFAMLVLVSSDNLLQMFFGWEGVGLASYLLIGFWSFKESAIKASMKAFVVNRIGD 180
L ML + +L ++ +E + L+SY L+ + + A K ++ IG
Sbjct: 111 LLLLLLAGMLGAFLTGDLFNLYVFFEIMTLSSYFLVAHYGGRRRQASAGFKYLILGHIGT 170
Query: 181 LGLILAISAIIYLFHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSIA 240
L L++ + + +++F + S G
Sbjct: 171 LLLLIGVGLLYAATGTLNFADIALKLSSELDPG------------------------LGI 206
Query: 241 IICLLFFLGAMGKSAQLLLHVWLPDAM-EGPTPVSALIHAATMVTAGVFLVAR----MSP 295
LL +G K+ LH WLPDA E P+PVSAL+ +V GV+ + R + P
Sbjct: 207 AAFLLLLIGFGVKAGLFPLHFWLPDAHSEAPSPVSALLS-GVLVKVGVYGILRILYLVFP 265
Query: 296 LFELSPFVLDCITVLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVALGC---RAY 352
L + + + LG +T F L+Q DIKR++AYST SQ+GY+ + LG
Sbjct: 266 LLGGAYLWGNLLIALGILTILFGVLYALLQKDIKRLLAYSTVSQMGYILLGLGIGTPLGL 325
Query: 353 GASIFHLFTHAFFKALLFLGSGSVIHAVAGEQDMRRMGGLYPHLPRTCWMMIVGTLALTG 412
+IFHL HA KALLFLG+G+V++ G +D+ ++GGL +P T ++G L+L G
Sbjct: 326 AGAIFHLLNHALVKALLFLGAGAVLYR-TGTRDLEKLGGLAKRMPLTAVAFLIGALSLAG 384
Query: 413 FGIPETSIGFSGFFSKDIILEVAYTSSHFTFVFFLLLFAAFLTSFYSWRLMFLTFFGKM- 471
F+GF SK ++++ + ++ + +L L S ++ + F
Sbjct: 385 LPP------FNGFISKFLLIQALFKANALLAILIILAALILLASLATFISLARIFMLLFF 438
Query: 472 RVDKDISHKIHESPLVMQIPLFILAIGSIFFGFIFHDVFFGSAYSSFWKGALFASSSNNV 531
I + E PL+M P+ ILAI + G + ++ + +
Sbjct: 439 GQGAPIERDVPEVPLLMLAPMVILAILCLVLGLAPDPLLPKILQAAAAILLVPGLYIALI 498
Query: 532 L 532
L
Sbjct: 499 L 499
>gnl|CDD|177158 MTH00095, ND5, NADH dehydrogenase subunit 5; Provisional.
Length = 527
Score = 159 bits (405), Expect = 2e-39
Identities = 123/420 (29%), Positives = 203/420 (48%), Gaps = 53/420 (12%)
Query: 86 LSSVMF-VVVNSISAVVHIYSIGYMHDDPHRPRFFSYLSFFTFAMLVLVSSDNLLQMFFG 144
+S++F +++ ++ V ++S YM+ + + F+ L F +M +L S+++ M
Sbjct: 45 FNSLLFSLILLLVTLSVLVFSSYYMNGELNFNYFYFVLLIFVGSMFMLNFSNSVFTMLLS 104
Query: 145 WEGVGLASYLLIGFWSFKESAIKASMKAFVVNRIGDLGLILAISAIIYLFHSVDFDAVFQ 204
W+ +G++S+ L+ F++ +S +M + NRIGD + L S I+
Sbjct: 105 WDLLGISSFFLVLFYNNWDS-NSGAMNTALTNRIGDFFIFLFFSGFIF------------ 151
Query: 205 NASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSIAIICLLFFLGAMGKSAQLLLHVWLP 264
S S FS I L+ L + KSAQ WLP
Sbjct: 152 -----------SSYYFFSFSFFSSSMI------------LMLLLTSFTKSAQFPFSSWLP 188
Query: 265 DAMEGPTPVSALIHAATMVTAGVFLVARMSPLFELSPFVLDCITVLGCITAFFAATVGLV 324
AM PTPVS+L+H++T+VTAG+ L+ S L L+ V+ + ++G T FF++ LV
Sbjct: 189 KAMSAPTPVSSLVHSSTLVTAGLILLMNFSYLI-LNMNVMKIMLLIGLFTMFFSSLSALV 247
Query: 325 QHDIKRVIAYSTCSQLGYMFVALGCRAYGASIFHLFTHAFFKALLFLGSGSVIHAVAGEQ 384
+ D+K+V+A ST SQ+G+ + G S HL +HA FK+ LF+ G +IH+ G+Q
Sbjct: 248 EEDMKKVVALSTLSQMGFSMLTFGSGLSFVSFIHLLSHALFKSCLFMQVGYLIHSNFGQQ 307
Query: 385 DMRRMG--GLYPHLPRTCWMMIVGTLALTGFGIPETSIGFSGFFSKDIILEVAYTSSHFT 442
D R G P + ++V L G + SG SK++ILE+ + +++
Sbjct: 308 DGRNYSNNGNLPMFIQL--QLLVTLFCLCGL------MFTSGMVSKELILELFFFNNYMI 359
Query: 443 FVFFLLLFAAFLTSFYSWRLMFLTFFGKMRVDKDISHKIHESPLVMQIPLFILAIGSIFF 502
F + F+ FLT YS+RL F +V S S ++M +L S+FF
Sbjct: 360 FFSLMFFFSVFLTFGYSYRLWKSFFLSFSKVVNVYS-----SSVLMNFLSLMLVFFSVFF 414
>gnl|CDD|31212 COG1008, NuoM, NADH:ubiquinone oxidoreductase subunit 4 (chain M)
[Energy production and conversion].
Length = 497
Score = 127 bits (320), Expect = 1e-29
Identities = 126/510 (24%), Positives = 220/510 (43%), Gaps = 51/510 (10%)
Query: 1 MAMIYEVIVFLPLIGAVFSGFFGRLMGKQFADIFTSLLMVIGAFLSWYVFYEIGFGHDVQ 60
+ +++FLPLIGA+ +FA ++ + LS Y+F
Sbjct: 2 SFPLLSLLIFLPLIGALLILLIPD--NGKFARWIALVVSLATLLLSLYLFAGFDISSP-G 58
Query: 61 VVKREIFPWIIFDGLDIPWGLRIDTLSSVMFVVVNSISAVVHIYSIGYMHDDPHRPRFFS 120
E +PWI L + + L +D +S ++ V++ ++ ++ I + + RP+ F
Sbjct: 59 FQFVESYPWI--PQLGLSYHLGVDGIS-LLLVLLTALLTLLAILA--SWREIEKRPKLFY 113
Query: 121 YLSFFTFAMLVLV-SSDNLLQMFFGWEGVGLASYLLIGFWSFKESAIKASMKAFVVNRIG 179
L ++ V ++ +LL + WE + + Y LIG W K I A+ K F+ +G
Sbjct: 114 ALFLLLEGGVIGVFAALDLLLFYVFWELMLIPMYFLIGIWGGKRR-IYAATKFFLYTLLG 172
Query: 180 DLGLILAISAIIYLFHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSI 239
L ++LA + +L S FD + A ++ G+ ++ F G
Sbjct: 173 SLFMLLAFLYLYFLTGSPTFDILELLA-------LNLPLGV---QTLLFLG--------- 213
Query: 240 AIICLLFFLGAMGKSAQLLLHVWLPDA-MEGPTPVSALIHAATMVTAGVFLVARMSPLF- 297
F + K LH WLPDA +E PT S ++ + G L+ PLF
Sbjct: 214 ------FLIAFAVKMPLFPLHTWLPDAHVEAPTAGSVILAGILLKMGGYGLLRFSLPLFP 267
Query: 298 ELSPFVLDCITVLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYM---FVALGCRAYGA 354
+ S + + LG I+ + A V Q DIKR+IAYS+ S +G++ +
Sbjct: 268 DASAYFAPLLVALGVISIIYGALVAFAQTDIKRLIAYSSISHMGFVTLGIFSFNELGVSG 327
Query: 355 SIFHLFTHAFFKALLFLGSGSVIHAVAGEQDMRRMGGLYPHLPRTCWMMIVGTLALTGFG 414
++F + +H A LFL G V++ +D+ +GGL +P+ + ++ +A G
Sbjct: 328 AVFQMLSHGLISAALFLLVG-VLYERTHTRDIADLGGLANKMPKLAALFMLFAMA--SLG 384
Query: 415 IPETSIGFSGFFSKDIILEVAYTSSHFTFVFFLLLFAAFLTSFYSWRLMFLTFFGKMRVD 474
+P G SGF + +IL ++ F +V FL F LT+ Y + FFG +
Sbjct: 385 LP----GTSGFVGEFLILLGSF--QVFPWVAFLAAFGLILTAVYMLWMYQRVFFG--PLK 436
Query: 475 KDISHKIHESPLVMQIPLFILAIGSIFFGF 504
+ ++ + L L + +F G
Sbjct: 437 EGSLAELPDLNGREVFILAPLVVLILFLGV 466
>gnl|CDD|31211 COG1007, NuoN, NADH:ubiquinone oxidoreductase subunit 2 (chain N)
[Energy production and conversion].
Length = 475
Score = 109 bits (274), Expect = 2e-24
Identities = 94/445 (21%), Positives = 183/445 (41%), Gaps = 44/445 (9%)
Query: 81 LRIDTLSSVMFVVVNSISAVVHIYSIGYMHD-DPHRPRFFSYLSFFTFAMLVLVSSDNLL 139
+D L+ +M +VV S I S+ Y+ + F++ L F T M+V+ S++NLL
Sbjct: 64 FIVDALALLMKIVVLLASLAALILSLPYLERAGTFKGEFYALLLFATLGMIVMASANNLL 123
Query: 140 QMFFGWEGVGLASYLLIGFWSFKESAIKASMKAFVVNRIGDLGLILAISAIIYLFHSVDF 199
+F G E + LA Y+L + + +A++K FV+ + L+ I+ + S+
Sbjct: 124 LLFIGLELLSLALYVLAALRRDSKRSSEAALKYFVLGALSSAFLLYGIALVYGATGSLSL 183
Query: 200 DAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSIAIICLLFFLGAMG-KSAQLL 258
+ ++ ++ L+F + +G K + +
Sbjct: 184 SGIAAY-------------------------LNGGGEPLGLLLGLVFIIAGLGFKLSAVP 218
Query: 259 LHVWLPDAMEG-PTPVSALIHAATMVTAGVFLVARMSPLFE-LSPFVLDCITVLGCITAF 316
H+W PD EG PTPV+A + A + A L+ F +P ++ +
Sbjct: 219 FHMWTPDVYEGAPTPVTAFLSTAPKIAAFAVLLRIFVTAFGPDAPDWYLIFAIIAVASML 278
Query: 317 FAATVGLVQHDIKRVIAYSTCSQLGYM---FVALGCRAYGASIFHLFTHAFFKALLFLGS 373
L Q ++KR++AYS+ + +GY+ A+ Y A +F+L +AF F
Sbjct: 279 VGNFAALSQTNVKRLLAYSSIAHMGYLLVGLAAVTVGGYAAVLFYLLAYAFMSLGAFGVV 338
Query: 374 GSVIHAVAGEQDMRRMGGLYPHLPRTCWMMIVGTLALTGFGIPETSIGFSGFFSKDIILE 433
+ G + + + GL P ++ + L+L GIP +GF+ K +
Sbjct: 339 ALLSSKEGGAESISDLAGLSKRHPLLAALLTILMLSLA--GIPPL----AGFWGKFYVFL 392
Query: 434 VAYTSSHFTFVFFLLLFAAFLTSFYSWRLMFLTFFGKMRVDKDISHKIHESPLVMQIPLF 493
A + + +L +A ++++Y R++ +F + + + + ++ L
Sbjct: 393 AAVQAGLWWLAVIAVLNSA-ISAYYYLRVVKAMYFE----EPEGAFRDAPQYTALKAVLL 447
Query: 494 ILAIGSIFFGFIFHDVFFGSAYSSF 518
+ AI + G I A +
Sbjct: 448 VAAILVLVLG-ILPQPVIDLAAQAA 471
>gnl|CDD|177135 MTH00063, ND5, NADH dehydrogenase subunit 5; Provisional.
Length = 522
Score = 96.5 bits (241), Expect = 2e-20
Identities = 116/490 (23%), Positives = 193/490 (39%), Gaps = 76/490 (15%)
Query: 84 DTLSSVMFVVVNSISAVVHIYSIGYMHDDPHRPRFFSYLSFFTFAMLVLVSSDNLLQMFF 143
D ++ + +++ +Y+ Y + F M +LV + + L
Sbjct: 44 DYVTFGVLLMLLICFYYSLLYTFHYFGGSYASFLLNKLIVLFVLVMGILVLTGDFLSTLI 103
Query: 144 GWEGVGLASYLLIGFWSFKESAIKASMKAFVVNRIGDLGLILAISAIIYLFHSVDFDAVF 203
WE +G+ S+ LI F+ S +AS+ V +R GD+ L L I
Sbjct: 104 FWEYLGVVSFFLILFYDNFLSL-RASVVTLVSSRFGDVCLFLLIG--------------- 147
Query: 204 QNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSIAIICLLFFLGAMGKSAQLLLHVWL 263
G+ + CL FFL KSA WL
Sbjct: 148 ----LSCWGGSGSF-----------------------LCCLFFFLIVFTKSASFPFISWL 180
Query: 264 PDAMEGPTPVSALIHAATMVTAGVFLVARMSPLFELSPFVLDCITVLGCITAFFAATVGL 323
+AM PTPVS+L+H++T+V AGV+ V R L S + +VL +T F L
Sbjct: 181 LEAMRAPTPVSSLVHSSTLVAAGVWFVMRYDYLLGFSWLSI-FFSVLLLLTIFITGVSSL 239
Query: 324 VQHDIKRVIAYSTCSQLGYMFVALGCRAYGASIFHLFTHAFFKALLFLGSGSVIHAVAGE 383
D+K+++A STC+ + + + L S+F L +H K LLF+ G V+ G
Sbjct: 240 FFSDLKKIVALSTCNNISWCVLYLIYGDVILSLFQLVSHGVSKCLLFMLVGDVMSGSGGS 299
Query: 384 QDMRRMGGLYPHLPRTCWMMIVGTLALTGF-GIPETSIGFSG-FFSKDIILEVAYTSSHF 441
Q +Y + W + L + G G+P F G FFSK +L +
Sbjct: 300 QS---SNCVYSSILYGSWNLFYLFLLVLGLSGVP-----FIGVFFSKHFLLSSFSSVVFN 351
Query: 442 TFVFFLLLFAAFLTSFYSWRLMFLTFFGKMRVDKDISHKIHESPLVMQIPLFI------- 494
+ +++ FL+ YS+RL + F K + + S L++ + LFI
Sbjct: 352 VSLLLVVILCVFLSYLYSFRLCLILFGVKSSLSSGVRFLFFNSGLMVFLWLFINYYVFLL 411
Query: 495 -------------LAIGSIFFGFIFHDVFFGSAYSSFWKGALFASSSNNVLERYHEVPLW 541
+ + G + +F+ S S W +LF +N++E ++E+
Sbjct: 412 LDEVVYLGVFISLVLLLVQLLGLLVGVLFYDSNLFSNWSSSLFG--CDNLVELFYELFYS 469
Query: 542 VEYSSFIAFF 551
+ + FF
Sbjct: 470 ILDLVSLFFF 479
>gnl|CDD|109709 pfam00662, Oxidored_q1_N, NADH-Ubiquinone oxidoreductase (complex
I), chain 5 N-terminus. This sub-family represents an
amino terminal extension of pfam00361. Only
NADH-Ubiquinone chain 5 and eubacterial chain L are in
this family. This sub-family is part of complex I which
catalyses the transfer of two electrons from NADH to
ubiquinone in a reaction that is associated with proton
translocation across the membrane.
Length = 62
Score = 68.0 bits (167), Expect = 8e-12
Identities = 27/59 (45%), Positives = 37/59 (62%)
Query: 66 IFPWIIFDGLDIPWGLRIDTLSSVMFVVVNSISAVVHIYSIGYMHDDPHRPRFFSYLSF 124
++ WI +I WG D+LS + VV ++S +VH+YSI YM DP+ RFFSYLS
Sbjct: 4 LWNWINSGSFNINWGFLFDSLSLIFLSVVLTVSWLVHLYSIWYMSHDPNINRFFSYLSL 62
>gnl|CDD|40042 KOG4845, KOG4845, KOG4845, NADH dehydrogenase, subunit 4 [Energy
production and conversion].
Length = 452
Score = 65.7 bits (160), Expect = 4e-11
Identities = 86/401 (21%), Positives = 152/401 (37%), Gaps = 44/401 (10%)
Query: 76 DIPWGLRIDTLSSVMFVVVNSISAVVHIYSIGYMHDDPHRPRFFSYLSFFTFAMLVLVSS 135
I L ID LS + ++ I + I ++ ++ F F +++ SS
Sbjct: 51 WISLFLGIDGLSFGLLILTTFIIPL--IILASEKGNNNYKKLFLILSLILVFLLIITFSS 108
Query: 136 DNLLQMFFGWEGVGLASYLLIGFWSFKESAIKASMKAFVVNRIGDLGLILAISAIIYLFH 195
+LL + +E + + +LI W + + A+ +G L L++ I I
Sbjct: 109 SDLLMFYIFFELSLIPTLVLILGWGSQPERLNAAYYFLFYTLLGSLPLLIGILYINNYGG 168
Query: 196 SVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSIAIICLLFFLGAMGKSA 255
S++F + N S V L K
Sbjct: 169 SLNF-----------LLLNLTSYPFVISILMYI----------------ALLLAFAVKMP 201
Query: 256 QLLLHVWLPDA-MEGPTPVSALIHAATMVTAGVFLVARMSPLFELSPFVLD-CITVLGCI 313
LH+WLP A +E PT S L+ A ++ G + R++ + + V V+ I
Sbjct: 202 IYPLHLWLPKAHVEAPTSGSMLL-AGILLKLGTYGFLRINMILPSATLVHSPVWLVISLI 260
Query: 314 TAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVALGCRAY---GASIFHLFTHAFFKALLF 370
+ ++ L Q D+K++IAYS+ S +G++ + + SI + H + LF
Sbjct: 261 GIIYTSSTCLRQTDLKKLIAYSSVSHMGFVLIGILSITMWGLIGSILLMIAHGLTSSALF 320
Query: 371 LGSGSVIHAVAGEQDMRRMGGLYPHLPRTCWMMIVGTLALTGFGIPETSIGFSGFFSKDI 430
+G G + M MGGL+ +P + +LA S F +
Sbjct: 321 CLAGVSYDRS-GSRMMYFMGGLFSSMPIMGTWFFLLSLANLA------LPPTSSFLGEFS 373
Query: 431 ILEVAYTSSHFTFVFFLLLFAAFLTSFYSWRLMFLTFFGKM 471
+L ++ S +F L+ LT+ YS L + GK+
Sbjct: 374 VLVGIFSWS--KIMFVLIAIGMILTAAYSLYLYTSSQMGKL 412
>gnl|CDD|164750 MTH00204, ND4, NADH dehydrogenase subunit 4; Provisional.
Length = 485
Score = 51.6 bits (124), Expect = 8e-07
Identities = 111/521 (21%), Positives = 197/521 (37%), Gaps = 63/521 (12%)
Query: 3 MIYEVIVFLPLIGAVFSGFFGRLMGKQFADI--FTSLLMVIGAFLSWYVFYEIGFGHDVQ 60
+I + +G + R + SL ++ + W F G Q
Sbjct: 1 NGLSLIFLILFMGIINVMGVPRENSVKLKKRALEWSLAILFSTLVLWGAFDGEG-----Q 55
Query: 61 VVKREIFPWIIFDGLDIPWG---LRIDTLSSVMFVV---VNSISAVVHIYSIGYMHDDPH 114
+ WII L+ WG +D +S ++ + I ++ SI ++ +
Sbjct: 56 FQFINLIEWIISPTLNFQWGPLVFAVDGVSLFFILLTTLLIPICILISWKSIKFLFKE-- 113
Query: 115 RPRFFSYLSFFTFAMLVLV-SSDNLLQMFFGWEGVGLASYLLIGFWSFKESAIKASMKAF 173
F F +L+ V S +LL + +EG+ + +LLIG W +E ++AS F
Sbjct: 114 ----FLLCLLFLEVLLIGVFSVLDLLLFYILFEGILIPMFLLIGIWGSREEKVRASYYFF 169
Query: 174 VVNRIGDLGLILAISAIIYLFHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDV 233
G + ++L I + + + D+ I +
Sbjct: 170 FYTFAGSVFMLLGIFQLYSITGTTDY--------------------------QILLNIKL 203
Query: 234 HPHDSIAIICLLFFLGAMGKSAQLLLHVWLPDA-MEGPTPVSALIHAATMVTAGVFLVAR 292
P + + FFL K Q+ H+WLP A +E P S ++ A ++ G + R
Sbjct: 204 -PLSIQKWLLVGFFLSLAVKIPQIPFHIWLPQAHVEAPVAGSVIL-AGILLKLGGYGFLR 261
Query: 293 MS-PLF-ELSPFVLDCITVLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVALGCR 350
S PLF S + I +L I + + Q D KR+IAYS+ + +G + + L
Sbjct: 262 FSWPLFPAASEYFAPLIVMLSVIAVIYGSLTTCRQVDFKRLIAYSSVAHMGLVPLGLFTH 321
Query: 351 AYG---ASIFHLFTHAFFKALLFLGSGSVIHAVAGEQDMRRMGGLYPHLPRTCWMMIVGT 407
A++F + H F + LF+ + ++ + ++ GL +P +M+V
Sbjct: 322 TIEGLVAAVFLMLAHGFVSSALFIAV-TFLYERHHTRLIKYYRGLTLTMPLFVIIMLV-- 378
Query: 408 LALTGFGIPETSIGFSGFFSKDIILEVAYTSSHFTFVFFLLLFAAFLTSFYSWRLMFLTF 467
L+L G P + FFS ++ Y+ + L+ ++ YS L
Sbjct: 379 LSLANMGFPLSCNFVGEFFS--LLAAFEYS----LGLGVLVTSGMVWSAAYSLYLYNRIS 432
Query: 468 FGKMRVDKDISHKIHESPLVMQIPLFILAIGSIFFGFIFHD 508
FG S ++ L+ +PL I FI D
Sbjct: 433 FGGGSNYLLFSRDLNRRELLAILPLIIAIFLLGIVPFIIID 473
>gnl|CDD|176990 CHL00049, ndhB, NADH dehydrogenase subunit 2.
Length = 494
Score = 51.2 bits (123), Expect = 9e-07
Identities = 87/407 (21%), Positives = 166/407 (40%), Gaps = 57/407 (14%)
Query: 118 FFSYLSFFTFAMLVLVSSDNLLQMFFGWEGVGLASYLLIGFWSFKESAIKASMKAFVVNR 177
F ++ T + L +++L+ +F E + L SYLL G+ + +A+MK
Sbjct: 113 FLLFVLTATLGGMFLCGANDLITIFVALECLSLCSYLLSGYTKKDVRSNEATMKYL---- 168
Query: 178 IGDLGLILAISAIIYLFHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHD 237
L+ S+ I ++ + +I N G+++ + ++ GI
Sbjct: 169 -----LMGGASSSILVYGFSWLYGLSGGEIELQEIVN----GLINTQMYNSPGI------ 213
Query: 238 SIAIICLLFFLGAMGKSAQLLLHVWLPDAMEG-PTPVSALIHAATMVTAGVFLVARMSPL 296
SIA+I + +G K + H W PD EG PTPV A + + V A L R+ +
Sbjct: 214 SIALIFITVGIGF--KLSLAPFHQWTPDVYEGSPTPVVAFLSVTSKV-AASALATRIFDI 270
Query: 297 FELSPFVLD----CITVLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVALGCRAY 352
F + + +L ++ + + Q +KR++AYS+ Q+GY+ + +
Sbjct: 271 --PFYFSSNEWHLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDS 328
Query: 353 GASIFHLFTHAFFKALLFLGSGSVIHAV---AGEQDMRRMGGLYPHLPRTCWMMIVGTLA 409
+ T+ F + LG+ + I G ++R GLY P + + L+
Sbjct: 329 NDGYASMITYMLFYIFMNLGTFACIVLFGLRTGTDNIRDYAGLYTKDPFLALSLALCLLS 388
Query: 410 LTGFGIPETSIGFSGFFSKDIILEVAYTSSHFTFVFFLLLFAAFLTS----FYSWRLMFL 465
L GIP +GFF K + + + + L+ LTS +Y +++ L
Sbjct: 389 LG--GIPP----LAGFFGKLYLFWCGWQAG-----LYFLVSIGLLTSVISIYYYLKIIKL 437
Query: 466 TFFGKMRVDKDISHKIHE-------SPLVMQIPLFILAIGSIFFGFI 505
G+ +++I+ + S +++ + + I S G
Sbjct: 438 LMTGR---NQEITPYVRNYRRSPLRSNNSIELSMIVCVIASTIPGIS 481
>gnl|CDD|177243 MTH00196, ND2, NADH dehydrogenase subunit 2; Provisional.
Length = 365
Score = 50.8 bits (122), Expect = 1e-06
Identities = 92/405 (22%), Positives = 164/405 (40%), Gaps = 61/405 (15%)
Query: 124 FFTFAMLVLVSSDNLLQMFFGWEGVGLASYLLIGFWSFKESAIKASMKAFVVNRIGDLGL 183
+L L+SS N L ++ E L+ ++LI + +A +K FV+ + GL
Sbjct: 1 MVALGILCLISSSNWLSVYLAIELQTLSLFILIAQNRGSGYSAEAGLKYFVLGALSS-GL 59
Query: 184 ILAISAIIY-LFHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSIAII 242
L A++ + + +V + SF + V + I+
Sbjct: 60 FLFGCALLCGTTGGLHLSYI----------------NLVLNSGQSFSSVSVPIGYLLIIV 103
Query: 243 CLLFFLGAMGKSAQLLLHVWLPDAMEG-PTPVSALIHAATMVTAGVFLVARMSPLFELSP 301
LLF L H+W PD EG PT +AL+ A + G+F S L +
Sbjct: 104 ALLFKLSVAP------FHMWAPDVYEGAPTKTTALL--AIVPKLGIF-----SILVSIGL 150
Query: 302 FVLDCITVLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVALGCRAY---GASIFH 358
++ + + G + F A L Q IKR++AYS +G++ + ++ AS+ +
Sbjct: 151 -NVNILLIGGLFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIGSFESIQASLVY 209
Query: 359 LFTHAFFKALLFLGSGSVIHAVAGEQDMR-RMGGLYPHLPRTCWMMIVGTLALTGF---G 414
LF + +F S+I A+ +++ GL LP ++ TLALT G
Sbjct: 210 LFIYIIMSICVF----SIILALNVYKNLIIEFSGLSRRLP-----ILAITLALTFLSIAG 260
Query: 415 IPETSIGFSGFFSKDIILEVAYTSSHFTFVFFLLLFAAFLTSFYSWRLMFLTFFGKMRVD 474
IP GF K +IL ++ +F L +F + + Y R++ + FF
Sbjct: 261 IPP----LVGFLGKWLILLSGVVYQYY-LIFLLAVFCSVIAGVYYVRIVKILFFQA---- 311
Query: 475 KDISHKIHESPLVMQIPLFILAIGSIFFGFIFHDVFFGSAYSSFW 519
+ + S +++ I ++ GF + + F +F+
Sbjct: 312 ---NSFLLISTKILKKENKINLRKALLIGFSLYLILFTILSPNFF 353
>gnl|CDD|177262 MTH00226, ND4, NADH dehydrogenase subunit 4; Provisional.
Length = 505
Score = 49.2 bits (117), Expect = 3e-06
Identities = 55/250 (22%), Positives = 100/250 (40%), Gaps = 30/250 (12%)
Query: 127 FAMLVLVSSDNLLQMFFGWEGVGLASYLLIGFWSFKESAIKASMKAFVVNRIGDLGLILA 186
F + + S ++ + +EGV + YL++G W +E ++A+ F IG + ++L
Sbjct: 142 FLLYAVFSVLDIFMFYILFEGVLIPMYLILGIWGSREEKMQAAYYFFFYTLIGSVLMLLC 201
Query: 187 ISAIIYLFHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSIAIICLLF 246
+ ++ + + D+ + + V S F L
Sbjct: 202 LFSLYNIHGTTDYLTLASC--------SHVVSEQTQKWIF-----------------LGI 236
Query: 247 FLGAMGKSAQLLLHVWLPDA-MEGPTPVSALIHAATMVTAGVFLVARMSPLFELSPFVL- 304
FL K H+WLP A +E P S L+ + G LV P+ L L
Sbjct: 237 FLAMAVKIPIFPFHIWLPKAHVEAPVAGSVLLAGILLKLGGYGLVRLSWPILPLGAQNLA 296
Query: 305 DCITVLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVALGCR---AYGASIFHLFT 361
+ +G + + + Q D+KR++AYS+ + +G + + L SIF +
Sbjct: 297 PAVIAMGIVGIVYGSFATCRQIDVKRLVAYSSVAHMGLVSITLVTHDIIGLTGSIFIMLA 356
Query: 362 HAFFKALLFL 371
H +LLF+
Sbjct: 357 HGIVSSLLFI 366
>gnl|CDD|164589 MTH00014, ND4, NADH dehydrogenase subunit 4; Validated.
Length = 452
Score = 44.7 bits (106), Expect = 9e-05
Identities = 61/272 (22%), Positives = 111/272 (40%), Gaps = 50/272 (18%)
Query: 84 DTLSSVMFVVVNSISAVVHIYSIGYMHDDPHRPRFFSYLSFFTFAMLVLVSSDNLLQMFF 143
D LS+ + + I+A++ + S ++ F + + +L+ S+ NLL +
Sbjct: 58 DMLSAPLITLTLWITALMILASFKIFQNNKAPKTFMTNILILNLILLLTFSASNLLMFYI 117
Query: 144 GWEGVGLASYLLIGFWSFKESAIKASMKAFVVNRIGDLGLILAISAIIYLFHSVDFDAVF 203
+E + + LI W ++ ++AS + L L+++I I Y +S+
Sbjct: 118 FFEASLIPTLFLILGWGYQPERLQASFYLMIYTVTASLPLLMSILLIFYTNNSLSM---- 173
Query: 204 QNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSIAIICLLFFLGAMGKSAQLLLHVWL 263
+ S M + + + L+ L M K +H+WL
Sbjct: 174 ------------LMSSMEPPSIYL-----------MNLWWLITILAFMVKMPLYTVHLWL 210
Query: 264 PDA-MEGPTPVSALIHAATMVTAGVFL------VARMSPLF-----ELSPFVLDCITVLG 311
P A +E P A +M+ AG+ L + RMS LF LS I+++G
Sbjct: 211 PKAHVEAPV-------AGSMILAGILLKLGGYGLLRMSSLFMHINKSLSAPFS-SISLVG 262
Query: 312 CITAFFAATVGLVQHDIKRVIAYSTCSQLGYM 343
A + + + Q D+K +IAYS+ +G M
Sbjct: 263 ---AVITSLICIRQPDLKSLIAYSSVGHMGLM 291
>gnl|CDD|164762 MTH00217, ND4, NADH dehydrogenase subunit 4; Provisional.
Length = 482
Score = 41.2 bits (97), Expect = 0.001
Identities = 59/240 (24%), Positives = 100/240 (41%), Gaps = 46/240 (19%)
Query: 145 WEGVGLASYLLIGFWSFKESAIKASMKAFVVNRIGDLGLILAISAIIYLFHSVDFDAV-- 202
+EG+ + +L+IG W +E ++AS F IG + ++L I + + D+ A+
Sbjct: 138 FEGILIPMFLIIGIWGSREEKVQASYYFFFYTFIGSVFMLLGIFTLYSYAGTTDYQALCC 197
Query: 203 --FQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSIAIICLLFFLGAMGKSAQLLLH 260
+ Y+ I L FFL K ++ H
Sbjct: 198 LKIEKELQYF-------------------------------IFLGFFLSLAIKIPKIPFH 226
Query: 261 VWLPDA-MEGPTPVSALIHAATMVTAGVFLVARMS-PLF-ELSPFVLDCITVLGCITAFF 317
+WLP A +E P S ++ A ++ G + R S PL E S + I L + +
Sbjct: 227 IWLPQAHVEAPVAGSVIL-AGVLLKLGGYGFIRFSWPLLPEASEYFSPLIQTLSLLAIIY 285
Query: 318 AATVGLVQHDIKRVIAYSTCSQLGYMFVALGCRAYG-----ASIFHLFTHAFFKALLFLG 372
+ Q D+KR+IAYS+ + +G V LG ++ A+IF + H + LF+
Sbjct: 286 GSLTTCRQVDLKRIIAYSSVAHMG--LVTLGIFSHTIQGLVAAIFLMLAHGLVSSALFIA 343
>gnl|CDD|177119 MTH00044, ND4, NADH dehydrogenase subunit 4; Validated.
Length = 458
Score = 40.7 bits (96), Expect = 0.001
Identities = 58/272 (21%), Positives = 114/272 (41%), Gaps = 30/272 (11%)
Query: 77 IPWGLRIDTLSSVMFVVVNSISAVVHIYSIGYMHDDPHRPR--FFSYLSFFTFAMLVLVS 134
+ L D+LSS + ++ ++ + + SI ++ ++ + F S + A+++ S
Sbjct: 53 LSLSLATDSLSSPLIILSCWLAPLSLLASINHLSNNSPNNQRTFISLIIIILTALIITFS 112
Query: 135 SDNLLQMFFGWEGVGLASYLLIGFWSFKESAIKASMKAFVVNRIGDLGLILAISAIIYLF 194
S L+ + +E + + +LI W ++ I+A + G L L++++ AI
Sbjct: 113 SLELILFYIAFETTLIPTLILITRWGAQKERIQAGLYFLFYTLFGSLPLLISLIAI---- 168
Query: 195 HSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSIAIICLLFFLGAMGKS 254
SS +S + +S +I + L + K
Sbjct: 169 --------------------YSSSSSLSIPLSELNWLTSLSSNSSSIWWIFCILAFLVKM 208
Query: 255 AQLLLHVWLPDA-MEGPTPVSALIHAATMVTAGVFLVARMSPLFEL--SPFVLDCITVLG 311
H+WLP A +E P S +I AA ++ G + + R+ LF L + + + V
Sbjct: 209 PIYGFHLWLPKAHVEAPVAGS-MILAAILLKLGGYGLIRLINLFSLPSANNISFILIVFC 267
Query: 312 CITAFFAATVGLVQHDIKRVIAYSTCSQLGYM 343
C A + + L Q D+K +IAYS+ + +
Sbjct: 268 CWGALITSIICLRQTDLKALIAYSSVGHMSLV 299
>gnl|CDD|176954 CHL00011, ndhD, NADH dehydrogenase subunit 4.
Length = 498
Score = 38.8 bits (91), Expect = 0.005
Identities = 97/408 (23%), Positives = 170/408 (41%), Gaps = 81/408 (19%)
Query: 125 FTFAMLV-------LVSSDNLLQMFFGWEGVGLASYLLIGFWSFKESAIKASMKAFVVNR 177
F F ML L SS +LL F WE + YLL+ W K+ A+ K +
Sbjct: 114 FYFLMLAMYSGQIGLFSSRDLLLFFIMWELELIPVYLLLSMWGGKKRLYSAT-KFILYTA 172
Query: 178 IGDLGLILAISAI-IYLFHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPH 236
G + L++ + + +Y + + F+ ++++S+
Sbjct: 173 GGSIFLLIGVLGMGLYGSNEPTLN--FET---------------LANQSYPV-------- 207
Query: 237 DSIAIICLLFFLGAMG-KSAQLLLHVWLPDAMEGPTPVSALIHAAT-MVTAGVFL----- 289
++ I+ + FL A K + LH WLPD T A H +T M+ AG+ L
Sbjct: 208 -ALEILFYIGFLIAYAVKLPIIPLHTWLPD-----THGEA--HYSTCMLLAGILLKMGAY 259
Query: 290 -VARMSPLFELSP----FVLDCITVLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMF 344
+ R++ EL P + ++G I +AA+ L Q ++K+ IAYS+ S +G++
Sbjct: 260 GLIRIN--MELLPHAHSIFSPWLVIVGAIQIIYAASTSLGQRNLKKRIAYSSVSHMGFII 317
Query: 345 VALGCRAY----GASIFHLFTHAFFKALLFLGSGSV---IHAVAGEQDMRRMGGLYPHLP 397
+ +G GA I + +H F A LF +G+ I V ++ MGG+ +P
Sbjct: 318 IGIGSITDTGLNGA-ILQIISHGFIGAALFFLAGTSYDRIRLVYLDE----MGGIAIPMP 372
Query: 398 RTCWMMIVGTLALTGFGIPETSIGFSGFFSKDIILEVAYTSSHFTFVF-----FLLLFAA 452
+ M + ++ +P G SGF ++ I+ TS + + F++
Sbjct: 373 KIFTMF--SSFSMASLALP----GMSGFVAELIVFFGIITSQKYLLMPKILITFVMAIGM 426
Query: 453 FLTSFYSWRLMFLTFFGKMRVDKDISHKIHESP--LVMQIPLFILAIG 498
LT Y ++ F+G + S+ P L + I + + IG
Sbjct: 427 ILTPIYLLSMLRQMFYGYKLFNVPNSYFFDSGPRELFISICILLPVIG 474
>gnl|CDD|164746 MTH00198, ND2, NADH dehydrogenase subunit 2; Provisional.
Length = 607
Score = 38.3 bits (89), Expect = 0.007
Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 9/101 (8%)
Query: 253 KSAQLLLHVWLPDAMEG-PTPVSALIHAATMVTAGVFLVARMSPLFELSPFVLDCITVLG 311
K A H+W PD EG PTP +ALI T + L + + ++ +L + ++
Sbjct: 312 KLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYILLTSLV-----ITSKLLLSVAIIS 366
Query: 312 CITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVALGCRAY 352
+ F A L Q IKR++AYS +G++ + + Y
Sbjct: 367 LVVGAFGA---LNQTRIKRLLAYSGIGHIGFILIGVSAGTY 404
>gnl|CDD|177202 MTH00144, ND2, NADH dehydrogenase subunit 2; Provisional.
Length = 328
Score = 37.6 bits (88), Expect = 0.013
Identities = 57/263 (21%), Positives = 104/263 (39%), Gaps = 23/263 (8%)
Query: 244 LLFFLGAMGKSAQLLLHVWLPDAMEGPTPVSALIHAATMVTAGVFLVARMSPLFELSPFV 303
L LG K H W+P M G + +S + A +FL+ F ++
Sbjct: 88 SLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLL----SNFLDLYWL 143
Query: 304 LDCITVLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVALGCRAYGASIFHLFTHA 363
+ V+ ++A + GL Q ++ ++AYS+ S G+M VA+ + +
Sbjct: 144 AYLLCVISVLSALVGSIGGLNQTQVRALLAYSSISHTGWMLVAILH-GSWLMWMYFLIYI 202
Query: 364 FFKALLFLGSGSVIHAVAGEQDMRRMGGLYPHLPRTCWMMIVGTLALTGFGIPETSIGFS 423
LF S D M L P + + +L L+ G+P F
Sbjct: 203 VSSGFLFFSLWS--------GDSGSMKDLGSLKPSYKTGLSIISLLLSLGGLPP----FL 250
Query: 424 GFFSKDIILEVAYTSSHFTFVFFLLLFAAFLTSFYSWRLMFLTFFGKMRVDKDISHKIHE 483
GF SK ++L ++ S + LLL + ++ F+ + F +F + K S K+
Sbjct: 251 GFCSKLLVL-ISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFLSSSKSKKSNSSKVLN 309
Query: 484 SPLVMQIPLFILAIGSIFFGFIF 506
S ++ + +G + F ++
Sbjct: 310 SSIIS-----LNLLGGLLFLLLY 327
>gnl|CDD|177140 MTH00068, ND4, NADH dehydrogenase subunit 4; Provisional.
Length = 458
Score = 37.2 bits (87), Expect = 0.017
Identities = 40/116 (34%), Positives = 57/116 (49%), Gaps = 26/116 (22%)
Query: 243 CLLFFLGAMGKSAQLLLHVWLPDAMEGPTPVSALIHAATMVTAGVFL------VARMSPL 296
CLL F M K LH+WLP A V A I A +M+ A V L + R+S L
Sbjct: 199 CLLAF---MVKMPLYGLHLWLPKAH-----VEAPI-AGSMILAAVLLKLGGYGILRISIL 249
Query: 297 F-----ELS-PFVLDCITVLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVA 346
ELS PF++ + + G + + + L Q D+K +IAYS+ S +G + A
Sbjct: 250 LTPLSKELSYPFII--LALWGVL---MTSLICLRQTDLKSLIAYSSVSHMGLVIAA 300
>gnl|CDD|177250 MTH00206, ND4, NADH dehydrogenase subunit 4; Provisional.
Length = 450
Score = 36.8 bits (86), Expect = 0.021
Identities = 50/238 (21%), Positives = 90/238 (37%), Gaps = 42/238 (17%)
Query: 118 FFSYLSFFTFAMLVLVSSDNLLQMFFGWEGVGLASYLLIGFWSFKESAIKASMKAFVVNR 177
+ + L +++ SS NLL + +E + + LLI W ++ + A
Sbjct: 94 YITLLIVLQLFLILFFSSSNLLLFYILFEASLIPTLLLITRWGNQKERLNAGYYFLFYTL 153
Query: 178 IGDLGLILAISAIIYLFHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHD 237
IG L L++A+ + S G +S F +
Sbjct: 154 IGSLPLLIAL------------------------LFLQNSLGSLSLYILYFSKLTTW--- 186
Query: 238 SIAIICLLFFLGAMGKSAQLLLHVWLPDA-MEGPTPVSALIHAATMVTAGVFL------V 290
+ + L L + K +H+WLP A +E P A +MV AGV L +
Sbjct: 187 NNNLWWLACILAFLVKLPLYGVHLWLPKAHVEAPV-------AGSMVLAGVLLKLGGYGM 239
Query: 291 ARMSPLF-ELSPFVLDCITVLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVAL 347
R+ + + +LG + +++ L Q D+K +IAYS+ S + + +
Sbjct: 240 MRIILILGPSTKLSSYFFIILGLWGSIMTSSICLRQTDLKSLIAYSSVSHMSLVTAGI 297
>gnl|CDD|177249 MTH00205, ND4, NADH dehydrogenase subunit 4; Provisional.
Length = 448
Score = 35.0 bits (81), Expect = 0.079
Identities = 67/339 (19%), Positives = 122/339 (35%), Gaps = 59/339 (17%)
Query: 17 VFSGFFGRLMGKQFADIFTSLLMVIGAFLSWYVFYEIGFGHDVQVVKREIFPWIIFDGLD 76
VFS + K F S L++IG F S + F +I
Sbjct: 6 VFSLLIILFVLKFKDWSFFSNLLLIGLFFSSFFFSNSFLM----------TSFISS---- 51
Query: 77 IPWGLRIDTLSSVMFVVVNSISAVVHIYSIGYMHDDPHRPRFFSYLSFFTFAMLVLVSSD 136
D+LS + ++ IS ++ + S + + F + +++ S D
Sbjct: 52 ---SFSFDSLSLPLIMLSFWISLLMVLASYKVFKSNKNSKLFTVSVIMLLLILILSFSVD 108
Query: 137 NLLQMFFGWEGVGLASYLLIGFWSFKESAIKASMKAFVVNRIGDLGLILAISAIIYLFHS 196
NLL + +E + + +LI W ++ ++ASM + L L++ + +L
Sbjct: 109 NLLLFYITFEASLIPTLILILGWGYQPERLQASMYMMMYTLCASLPLLI---GLFFLNS- 164
Query: 197 VDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSIAIICLLFFLGAMGKSAQ 256
+ S M + F + + L + K
Sbjct: 165 -----------------LNFSLSMFFNFPL-NFSDFYL-----FLYWIFLMLAFLVKLPM 201
Query: 257 LLLHVWLPDA-MEGPTPVSALIHAATMVTAGVFL------VAR-MSPLFELSPFVLDCIT 308
+H+WLP A +E P + +M+ AGV L + R S L++L+ +
Sbjct: 202 YFVHLWLPKAHVEAPV-------SGSMILAGVLLKLGGYGLIRITSMLYKLNSNFSELFF 254
Query: 309 VLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVAL 347
+ + L Q D+K +IAYS+ +G M V +
Sbjct: 255 SISLWGGVMTGMICLRQVDLKSLIAYSSVGHMGLMVVGV 293
>gnl|CDD|177174 MTH00112, ND2, NADH dehydrogenase subunit 2; Provisional.
Length = 346
Score = 34.4 bits (80), Expect = 0.11
Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 5/105 (4%)
Query: 243 CLLFFLGAMGKSAQLLLHVWLPDAMEGPTPVSALIHAATMVTAGVFLVARMSPLFELSPF 302
C L L K H WLP+ ++G T +ALI + A + L+ S L+P
Sbjct: 95 CTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNS--LNPT 152
Query: 303 VLDCITVLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVAL 347
+L L ++ GL Q +++++A+S+ + LG+M +
Sbjct: 153 LL---LTLAILSTLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAII 194
>gnl|CDD|164587 MTH00011, ND2, NADH dehydrogenase subunit 2; Validated.
Length = 330
Score = 34.0 bits (78), Expect = 0.12
Identities = 47/255 (18%), Positives = 95/255 (37%), Gaps = 19/255 (7%)
Query: 244 LLFFLGAMGKSAQLLLHVWLPDAMEGPTPVSALIHAATMVTAGVFLVARMSPLFELSPFV 303
L+ + M K H W P M + LI + A + ++ + L
Sbjct: 92 LMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILP--- 148
Query: 304 LDCITVLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVALGCRAYGASIFHLFTHA 363
+T + ++A G+ Q ++ ++AYS+ +G+M + + +I + T+
Sbjct: 149 --MMTSMAAMSALAGGLGGMNQTQLRPLLAYSSIGHMGWMTMIS-VFSPSMAILYFMTYI 205
Query: 364 FFKALLFLGSGSVIHAVAGEQDMRRMGGLYPHLPRTCWMMIVGTLALTGFGIPETSIGFS 423
L L + A + + T + + L+L G+P F+
Sbjct: 206 IITTPLML-----LFAYLNAFSTKFNSKISSMSQTTSMSLFIMLLSLG--GLPP----FT 254
Query: 424 GFFSKDIILEVAYTSSHFTFVFFLLLFAAFLTSFYSWRLMFLTFFGKMRVDKDISHKIHE 483
GF K + +E TS+ + +L+ + + FY L+F F + +E
Sbjct: 255 GFMPKLMAIE-TLTSNSMILILLVLIVGSLMNLFYYLNLIF-NFMYLSPTFSSLKSAPYE 312
Query: 484 SPLVMQIPLFILAIG 498
+ I + L++G
Sbjct: 313 PKTKILISMCTLSLG 327
>gnl|CDD|177186 MTH00127, ND4, NADH dehydrogenase subunit 4; Provisional.
Length = 459
Score = 34.2 bits (78), Expect = 0.12
Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 4/100 (4%)
Query: 243 CLLFFLGAMGKSAQLLLHVWLPDAMEGPTPVSALIHAATMVTAGVFLVARMSPLFE-LSP 301
CLL FL M +H+WLP A +++ AA ++ G + + RM + + L+
Sbjct: 200 CLLAFLVKMPLYG---VHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRMMVMLDPLTK 256
Query: 302 FVLDCITVLGCITAFFAATVGLVQHDIKRVIAYSTCSQLG 341
+ +L ++ L Q D+K +IAYS+ S +G
Sbjct: 257 ELSYPFIILALWGIIMTGSICLRQTDLKSLIAYSSVSHMG 296
>gnl|CDD|177244 MTH00197, ND2, NADH dehydrogenase subunit 2; Provisional.
Length = 323
Score = 33.5 bits (77), Expect = 0.19
Identities = 43/225 (19%), Positives = 91/225 (40%), Gaps = 20/225 (8%)
Query: 243 CLLFFLGAMGKSAQLLLHVWLPDAMEGPTPVSALIHAATMVTAGVFLVARMSPLFELSPF 302
+L LG + K H W+P ME + + + A A + ++A S F
Sbjct: 82 VVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSSSFMG--- 138
Query: 303 VLDCITVLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVALGCRAYGASIFHLFTH 362
+ + +++ G+ Q +I++++AYS+ G+M ++L +++L
Sbjct: 139 ----LLICSVLSSLIGGIGGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYF 194
Query: 363 AFFKALLFLGSGSVIHAVAGEQDMRRMGGLYPHLPRTCWMMIVGTLALTGFGIPETSIGF 422
L S + + ++ + ++ +G L+ G+P
Sbjct: 195 VIMFMLFLFLSKNNLSSLNQQYSNPESMSSN--------LVFLGLSFLSLGGLPP----L 242
Query: 423 SGFFSKDIILEVAYTSSHFTFVFFLLLFAAFLTSFYSWRLMFLTF 467
SGFF K +IL SS+ + + F+L+ + + +Y L + +
Sbjct: 243 SGFFLKWLILTSL-LSSNISLITFMLILSTCFSLYYYLSLAYKSL 286
>gnl|CDD|177246 MTH00200, ND2, NADH dehydrogenase subunit 2; Provisional.
Length = 347
Score = 33.0 bits (76), Expect = 0.27
Identities = 65/340 (19%), Positives = 130/340 (38%), Gaps = 59/340 (17%)
Query: 129 MLVLVSSDNLLQMFFGWEGVGLASYLLIGFWSFKES--AIKASMKAFVVNRIGDLGLILA 186
+L SS F W G+ + + +I + ++A+ K F +I A
Sbjct: 18 LLTFSSSH----WFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYF---------IIQA 64
Query: 187 ISAIIYLFHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSIAIICLLF 246
++ + LF + + S W I + S I ++ L
Sbjct: 65 TASALLLFGGL----LNAWTSGQWGISEMLGP-------LSETLI---------LLALAL 104
Query: 247 FLGAMGKSAQLLLHVWLPDAMEGPTPVSALIHAATMVTAGVFLVARMSPLFELSPFVLDC 306
LG H W+PD ++G + + LI + A L+ +++P +
Sbjct: 105 KLGLAP------GHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSN-----I 153
Query: 307 ITVLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVALGCRAYGASIFHLFTHAFFK 366
+ +LG ++ GL Q +++++AYS+ + LG++ L Y ++ L+ +
Sbjct: 154 LLLLGLLSVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGL---VYSPNLALLYLLLYVI 210
Query: 367 ALLFLGSGSVIHAVAGEQDMRRMGGLYPHLPRTCWMMIVGTLALTGFGIPETSIGFSGFF 426
L + ++ + + + P ++ + L+L G+P +GFF
Sbjct: 211 ITLTV---FLLLNLLNSTKINSLSSSKTKNPILSMLLGLTLLSLG--GLP----PLTGFF 261
Query: 427 SKDIILEVAYTSSHFTFVFFLLLFAAFLTSFYSWRLMFLT 466
K +IL + +LL + L+ F+ RL +LT
Sbjct: 262 PKWLIL-QELSKQGLFIYATILLLGSLLSLFFYLRLSYLT 300
>gnl|CDD|144913 pfam01496, V_ATPase_I, V-type ATPase 116kDa subunit family. This
family consists of the 116kDa V-type ATPase (vacuolar
(H+)-ATPases) subunits, as well as V-type ATP synthase
subunit i. The V-type ATPases family are proton pumps
that acidify intracellular compartments in eukaryotic
cells for example yeast central vacuoles,
clathrin-coated and synaptic vesicles. They have
important roles in membrane trafficking processes. The
116kDa subunit (subunit a) in the V-type ATPase is part
of the V0 functional domain responsible for proton
transport. The a subunit is a transmembrane glycoprotein
with multiple putative transmembrane helices it has a
hydrophilic amino terminal and a hydrophobic carboxy
terminal. It has roles in proton transport and assembly
of the V-type ATPase complex. This subunit is encoded by
two homologous gene in yeast VPH1 and STV1.
Length = 707
Score = 33.1 bits (76), Expect = 0.28
Identities = 25/102 (24%), Positives = 42/102 (41%), Gaps = 8/102 (7%)
Query: 441 FTFVFFLLLFAAFLTSFYSWRLMFLTFFGKMRVDKDISHKIHESPLVMQIPLFILAIGSI 500
FT + F F LMFL + ++K K+ + + L ++ + SI
Sbjct: 357 FTIITFPFFFGMMFGDAGYGLLMFLIALLLVLLEK----KLGKKKFKGRYILLLMGVFSI 412
Query: 501 FFGFIFHDVFFGSA---YSSFWKGALFASSSNNVLERYHEVP 539
+ GFI++D FG + + S W + S + HE P
Sbjct: 413 YTGFIYND-CFGKSLNIFGSGWLWPVMIKSGETLTLAPHEGP 453
>gnl|CDD|177142 MTH00070, ND2, NADH dehydrogenase subunit 2; Provisional.
Length = 346
Score = 33.0 bits (76), Expect = 0.30
Identities = 53/216 (24%), Positives = 100/216 (46%), Gaps = 31/216 (14%)
Query: 259 LHVWLPDAMEGPTPVSALIHAATMVTAGVFLVARMSPLFELSPFV-LDCITVLGCITAFF 317
H WLP+ ++G + LI + T +A M+ L ++S + + + ++G ++
Sbjct: 111 FHFWLPEVLQGLDLTTGLI----LSTWQK--LAPMALLIQISHLLNSNLLIIMGLLSTLI 164
Query: 318 AATVGLVQHDIKRVIAYSTCSQLGYMFVALG----CRAYGASIFHLFTHAFFKALLFLGS 373
GL Q +++++AYS+ + LG+M + L I+ + T + F L+ L S
Sbjct: 165 GGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNS 224
Query: 374 GSVIHAVAGEQDMRRMGGLYPHLPRTCWMMIVGTLALTGFGIPETSIGFSGFFSKDIILE 433
+ + ++ + P MM++ L+L G+P T +GF K +IL+
Sbjct: 225 TN----------INKLSSSWSKNPTLTSMMMLTLLSLG--GLPPT----TGFIPKWLILQ 268
Query: 434 VAYTSSHFTFVFFLLLFAAFLTSFYSWRL---MFLT 466
T + T + L+ +A L+ F+ RL M LT
Sbjct: 269 -ELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLT 303
>gnl|CDD|177245 MTH00199, ND2, NADH dehydrogenase subunit 2; Provisional.
Length = 460
Score = 31.5 bits (72), Expect = 0.72
Identities = 37/109 (33%), Positives = 53/109 (48%), Gaps = 17/109 (15%)
Query: 241 IICLLFFLGAMGKSAQLLLHVWLPDAMEG-PTPVSALIHAATMVTAGVFLVARMSPLFEL 299
I LLF L A H+W PD EG PT +AL+ AT+ GVF S L ++
Sbjct: 197 TISLLFKLSAAP------FHMWAPDVYEGAPTITTALL--ATVPKIGVF-----SILVQI 243
Query: 300 SPFVLDCITVLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVALG 348
P V + + + ++ + A L Q IKR++AYS +G F+ G
Sbjct: 244 GP-VTNVVLICAVLSIIYGAIGALNQTKIKRLLAYSGIGHMG--FILFG 289
>gnl|CDD|144555 pfam01010, Oxidored_q1_C, NADH-Ubiquinone oxidoreductase (complex
I), chain 5 C-terminus. This sub-family represents a
carboxyl terminal extension of pfam00361. Only
NADH-Ubiquinone chain 5 from chloroplasts are in this
family. This sub-family is part of complex I which
catalyses the transfer of two electrons from NADH to
ubiquinone in a reaction that is associated with proton
translocation across the membrane.
Length = 242
Score = 31.4 bits (72), Expect = 0.82
Identities = 30/105 (28%), Positives = 41/105 (39%), Gaps = 18/105 (17%)
Query: 466 TFFGKMRVDKDISHKIHESPLVMQIPLFILAIGSIFFGFI---FHDVFFGSAYSSFWKGA 522
T FG K HES M PL +L + ++F GFI F+ S W
Sbjct: 81 THFGN----KKTFSYPHESDNTMLFPLLVLVLFTLFVGFIGIPFNQEGIDLDILSKW--- 133
Query: 523 LFASSSNNVLERYHEVPLWVE------YSSFIAFFVGFFSAFLMY 561
S N + + + W E +S IA+F G F A +Y
Sbjct: 134 -LTPSINLLHQNSNNSVDWYEFLKNAIFSVSIAYF-GIFIASFLY 176
>gnl|CDD|177183 MTH00124, ND4, NADH dehydrogenase subunit 4; Provisional.
Length = 457
Score = 31.3 bits (72), Expect = 0.96
Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 13/90 (14%)
Query: 259 LHVWLPDAMEGPTPVSALIHAATMVTAGVFL------VARMSPLF-ELSPFVLDCITVLG 311
LH+WLP A V A I A +MV A + L + R++ L LS + L
Sbjct: 212 LHLWLPKAH-----VEAPI-AGSMVLAAILLKLGGYGIIRITLLLPPLSNTLHYPFLTLA 265
Query: 312 CITAFFAATVGLVQHDIKRVIAYSTCSQLG 341
A + + L Q D+K +IAYS+ S +G
Sbjct: 266 LWGALMTSLICLRQTDLKSLIAYSSVSHMG 295
>gnl|CDD|37379 KOG2168, KOG2168, KOG2168, Cullins [Cell cycle control, cell
division, chromosome partitioning].
Length = 835
Score = 30.3 bits (68), Expect = 1.9
Identities = 18/80 (22%), Positives = 28/80 (35%), Gaps = 11/80 (13%)
Query: 401 WMMIVGTLALTGFGIPETSIGFSGFFSKDIILEVAYTSSHFT------FVFFLLLFAAFL 454
W + T F KDI+ AY S+FT ++F +L L
Sbjct: 426 WFKLSLIRVDDQGSDSPTDELFLLEDQKDIL--EAYGESYFTNNGSQPLLYFQVLL---L 480
Query: 455 TSFYSWRLMFLTFFGKMRVD 474
+ + + FL R+D
Sbjct: 481 SGQFERAIEFLHREEPNRID 500
>gnl|CDD|177172 MTH00110, ND4, NADH dehydrogenase subunit 4; Provisional.
Length = 459
Score = 29.5 bits (67), Expect = 3.4
Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 23/100 (23%)
Query: 259 LHVWLPDAMEGPTPVSALIHAATMVTAGVFL------VARMSPLFELS------PFVLDC 306
LH+WLP A V A I A +MV A + L + R++ + PF++
Sbjct: 212 LHLWLPKAH-----VEAPI-AGSMVLAAILLKLGGYGMMRITIILNPLTEFMAYPFLM-- 263
Query: 307 ITVLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVA 346
+++ G I +++ L Q D+K +IAYS+ S + + VA
Sbjct: 264 LSLWGMI---MTSSICLRQTDLKSLIAYSSVSHMALVIVA 300
>gnl|CDD|177219 MTH00163, ND4, NADH dehydrogenase subunit 4; Provisional.
Length = 445
Score = 29.0 bits (66), Expect = 4.7
Identities = 49/239 (20%), Positives = 86/239 (35%), Gaps = 46/239 (19%)
Query: 118 FFSYLSFFTFAMLVLV-SSDNLLQMFFGWEGVGLASYLLIGFWSFKESAIKASMKAFVVN 176
F +L F L+L SS NLL + +E + + LI W ++ ++A +
Sbjct: 88 LFLFLILFLLIFLLLTFSSMNLLLFYIFFESSLIPTLFLILGWGYQPERLQAGIYLLFYT 147
Query: 177 RIGDLGLILAISAIIYLFHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPH 236
L L++ I + S+ F S++
Sbjct: 148 LFASLPLLVGIFYLYNNSGSLSF--------FLLNFFGSLNFLWY--------------- 184
Query: 237 DSIAIICLLFFLGAMGKSAQLLLHVWLPDA-MEGPTPVSALIHAATMVTAGVFL------ 289
L L + K +H+WLP A +E P + +M+ AGV L
Sbjct: 185 -------LSMILAFLVKMPMFFVHLWLPKAHVEAPV-------SGSMILAGVLLKLGGYG 230
Query: 290 VARMSPLFELSPFVLDCI-TVLGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVAL 347
+ R+ F + I + + + + L Q D+K +IAYS+ + +G + L
Sbjct: 231 LLRVMSFFSKLGLKFNYIWISISLVGGVIVSLICLRQVDLKSLIAYSSVAHMGLVLGGL 289
>gnl|CDD|177193 MTH00135, ND2, NADH dehydrogenase subunit 2; Provisional.
Length = 347
Score = 28.2 bits (64), Expect = 8.4
Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 24/98 (24%)
Query: 259 LHVWLPDAMEGPTPVSALIHAATMVTAGVFLVARMSPLFELSPFVLDC---------ITV 309
LH WLP+ ++G + LI +S +L+PF L +
Sbjct: 111 LHFWLPEVLQGLDLTTGLI---------------LSTWQKLAPFALILQIAPTNPTLLIT 155
Query: 310 LGCITAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVAL 347
LG + GL Q +++++AYS+ + LG+M + L
Sbjct: 156 LGLTSTLVGGWGGLNQTQLRKILAYSSIAHLGWMILVL 193
>gnl|CDD|143864 pfam00083, Sugar_tr, Sugar (and other) transporter.
Length = 449
Score = 28.0 bits (63), Expect = 9.6
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 12 PLIGAVFSGFFGRLMGKQFADIFTSLLMVIGAFLS 46
LIG++F+G G G++ + + ++L VIGA L
Sbjct: 59 CLIGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQ 93
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.334 0.146 0.465
Gapped
Lambda K H
0.267 0.0779 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 8,791,447
Number of extensions: 528205
Number of successful extensions: 3461
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3161
Number of HSP's successfully gapped: 272
Length of query: 666
Length of database: 6,263,737
Length adjustment: 100
Effective length of query: 566
Effective length of database: 4,102,837
Effective search space: 2322205742
Effective search space used: 2322205742
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 61 (27.2 bits)