HHsearch alignment for GI: 254780866 and conserved domain: COG1007
>COG1007 NuoN NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion].
Probab=100.00 E-value=0 Score=531.05 Aligned_cols=403 Identities=21% Similarity=0.346 Sum_probs=355.7
Q ss_pred EEEEHHHHHHHHHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCCEEEEEEC
Q ss_conf 65225889999999999999997520112---100235678999863024302654043311123431034312355312
Q gi|254780866|r 79 LGVDGISILLVVLTTFLTPFCILSSWKSI---QENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVW 155 (499)
Q Consensus 79 l~iD~ls~~f~~l~~~i~~l~~~ys~~~~---~~~~~~f~~llll~~~~~~~~~~s~dl~~l~v~~El~~l~~~~Li~~~ 155 (499)
T Consensus 64 ~~~d~~a~~~~~~~l~~s~~~l~~s~~~~~~~~~~~~Efy~L~l~a~lG~~~~~sa~~l~~lfiglEl~Sl~~Y~L~a~~ 143 (475)
T COG1007 64 FIVDALALLMKIVVLLASLAALILSLPYLERAGTFKGEFYALLLFATLGMIVMASANNLLLLFIGLELLSLALYVLAALR 143 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 87746899999999999999999857999966875258999999999999999984109999999999999999999841
Q ss_pred CCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHH--HHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 34332-32100011355445567766655443210001003443210133037--8999985410344455400023201
Q gi|254780866|r 156 GGSER-IYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSI--QYWMWIAFFCSFAIKIPMFPFHTWL 232 (499)
Q Consensus 156 ~~~~~-~~aa~ky~i~~~~~s~~lL~g~~~l~~~~gs~~~~~~~~~~~~~~~~--~~~~~~ll~~g~~~K~~~~PfH~Wl 232 (499)
T Consensus 144 r~~~~s~EaalKYfvlGalsS~~~l~G~al~Y~~tGsl~l~~i~~~~~~~~~~~~l~~g~vfii~gl~FKlsavPFH~W~ 223 (475)
T COG1007 144 RDSKRSSEAALKYFVLGALSSAFLLYGIALVYGATGSLSLSGIAAYLNGGGEPLGLLLGLVFIIAGLGFKLSAVPFHMWT 223 (475)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 77641257778999889899999999999999617887617888651267642499999999999999997347620157
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCC
Q ss_conf 01000222234433332322333211100001112233100000000012222212211100002443223321001354
Q gi|254780866|r 233 PNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312 (499)
Q Consensus 233 P~~y~~ap~~~salls~~~~k~g~~~l~r~~~~l~~~~~~~~~~~l~~l~~~t~~~g~l~al~q~d~KrllAySsi~~~G 312 (499)
T Consensus 224 PDVYeGApt~v~afls~a~Kia~f~vl~Ri~~~~~~~~~~~~~~i~~iiAv~SM~~GN~~Al~Q~nvKRlLAYSSIah~G 303 (475)
T COG1007 224 PDVYEGAPTPVTAFLSTAPKIAAFAVLLRIFVTAFGPDAPDWYLIFAIIAVASMLVGNFAALSQTNVKRLLAYSSIAHMG 303 (475)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_conf 40116999307899875278999999999999706764215999999999999999999999851599999984898899
Q ss_pred HHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHC-CCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHH
Q ss_conf 0233310487542210234555421023330356777764200-111100235565420233201345555301024443
Q gi|254780866|r 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLH-TRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSG 391 (499)
Q Consensus 313 ~i~~~l~~~~~~~~~~~~~~~~~h~~~k~~lFl~~g~i~~~~g-~~~l~~l~Gl~~~~P~~~~~~~i~~lsl~G~Pp~~G 391 (499)
T Consensus 304 y~L~gl~a~~~~g~~a~~~y~l~Y~~~~lgaf~~v~~~~~~~~~~~~~~~~~GL~~~~P~~A~~~~i~m~SLaGIPP~~G 383 (475)
T COG1007 304 YLLVGLAAVTVGGYAAVLFYLLAYAFMSLGAFGVVALLSSKEGGAESISDLAGLSKRHPLLAALLTILMLSLAGIPPLAG 383 (475)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCHHH
T ss_conf 99999997030222369999999999998999999998667887532464405033686899999999999758984012
Q ss_pred HCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 112289999999865-9999999999999999999999999728898765556878891268999999999999977248
Q gi|254780866|r 392 FIGEFLVIMSVFQNS-NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPV 470 (499)
Q Consensus 392 F~~k~~i~~~~~~~~-~~~~~~~~~~~~ls~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~lGi~p~ 470 (499)
T Consensus 384 F~gK~~vf~~av~~~~~~Laii~vl~S~isa~YYlRvv~~m~~~~~~~~~~~~~-~-~~~~~~~~~~~~i~~~~lgi~~~ 461 (475)
T COG1007 384 FWGKFYVFLAAVQAGLWWLAVIAVLNSAISAYYYLRVVKAMYFEEPEGAFRDAP-Q-YTALKAVLLVAAILVLVLGILPQ 461 (475)
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC-C-CCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999738699999999997998999999999997078644455544-5-55037999999999999997039
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 8999999999999
Q gi|254780866|r 471 PIRDTFSVPLSSI 483 (499)
Q Consensus 471 ~~~~~~~~~~~~l 483 (499)
T Consensus 462 ~~~~~~~~a~~~~ 474 (475)
T COG1007 462 PVIDLAAQAAAVL 474 (475)
T ss_pred HHHHHHHHHHHHC
T ss_conf 8999999987742