HHsearch alignment for GI: 254780866 and conserved domain: COG4078
>COG4078 Predicted membrane protein [Function unknown].
Probab=98.13 E-value=3.7e-06 Score=50.99 Aligned_cols=159 Identities=16% Similarity=0.144 Sum_probs=115.6
Q ss_pred CCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCC---C---------------CHHHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 54054665225889999999999999997520112---1---------------00235678999863024302654043
Q gi|254780866|r 73 YFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSI---Q---------------ENFREYMIAFLVLESMVIGAFLSLDM 134 (499)
Q Consensus 73 ~~~~~~l~iD~ls~~f~~l~~~i~~l~~~ys~~~~---~---------------~~~~~f~~llll~~~~~~~~~~s~dl 134 (499)
T Consensus 14 PfGDIV~yls~fn~i~fa~~lift~l~~ls~te~qvE~~~~~~~~k~~~V~~~E~kIrr~l--AiVcglAtaGam~TgDl 91 (221)
T COG4078 14 PFGDIVPYLSTFNMIIFAVLLIFTALPILSNTEVQVEIDHRRPRIKAKIVSPREDKIRRAL--AIVCGLATAGAMTTGDL 91 (221)
T ss_pred ECCCEEECCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCEEEECCHHHHHHHHH--HHHHHHHHCCCEEECCH
T ss_conf 1555453225488999999999999987468624787403675542278560699999999--99976640464443305
Q ss_pred CCHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 31112343103431235531234332321000113554455677666554432100010034432101330378999985
Q gi|254780866|r 135 LLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIA 214 (499)
Q Consensus 135 ~~l~v~~El~~l~~~~Li~~~~~~~~~~aa~ky~i~~~~~s~~lL~g~~~l~~~~gs~~~~~~~~~~~~~~~~~~~~~~l 214 (499)
T Consensus 92 FnftLFlsL~GI~NiGivsaV~~e~vL~aafqYGLiamiAsLPLFGgAaliLastGTLSv~EL~km~~~~--~l~f~k~l 169 (221)
T COG4078 92 FNFTLFLSLLGISNIGIVSAVEDEFVLEAAFQYGLIAMIASLPLFGGAALILASTGTLSVHELMKMPKGA--TLTFGKAL 169 (221)
T ss_pred HHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCEEHHHHHCCCCCC--EEHHHHHH
T ss_conf 7799999997622011000256899999898774899996065567513677437723688862699997--74498999
Q ss_pred HHCCCCCCCCCCCCCCCCCCC
Q ss_conf 410344455400023201010
Q gi|254780866|r 215 FFCSFAIKIPMFPFHTWLPNA 235 (499)
Q Consensus 215 l~~g~~~K~~~~PfH~WlP~~ 235 (499)
T Consensus 170 l~aGv~GEtGvaPFYA~Kaem 190 (221)
T COG4078 170 LTAGVIGETGVAPFYAVKAEM 190 (221)
T ss_pred HHCCCCCCCCCCHHHHHHHHH
T ss_conf 871212446656057777998