HHsearch alignment for GI: 254780866 and conserved domain: MTH00014

>MTH00014 ND4 NADH dehydrogenase subunit 4; Validated.
Probab=100.00  E-value=0  Score=595.33  Aligned_cols=446  Identities=30%  Similarity=0.542  Sum_probs=385.7

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCEEEEEEEEHHHHH
Q ss_conf             99999999999998720355303579999999999999999999986308888189998631348540546652258899
Q gi|254780866|r    8 IVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHLGVDGISIL   87 (499)
Q Consensus         8 lii~lPll~~li~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~iD~ls~~   87 (499)
T Consensus         2 l~il~p~i~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~----------~~~~~~~~vD~lS~~   61 (451)
T MTH00014          2 LKLIMPLISLLLLPLFK------KLYAWISILTLILSLLILIF--LY--MPSASI----------SMLTESLSSDMLSFP   61 (451)
T ss_pred             HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHH--HH--CCCCCH----------HHHHHHHHHHHHHHH
T ss_conf             13899999999999998------69999999999999999999--85--654327----------787588834674799


Q ss_pred             HHHHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCCEEEEEECC-CCCCCCCC
Q ss_conf             999999999999975201121--002356789998630243026540433111234310343123553123-43323210
Q gi|254780866|r   88 LVVLTTFLTPFCILSSWKSIQ--ENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-GSERIYAA  164 (499)
Q Consensus        88 f~~l~~~i~~l~~~ys~~~~~--~~~~~f~~llll~~~~~~~~~~s~dl~~l~v~~El~~l~~~~Li~~~~-~~~~~~aa  164 (499)
T Consensus        62 l~~Ls~~i~~l~~l~S~~~~~~~~~~~~f~~l~l~l~~~m~~~f~s~nl~~fyif~E~~lip~~~LI~~~g~~~~r~~A~  141 (451)
T MTH00014         62 LIILTLWITALMILASFKIFQNNKAPKTFMTNILILNLILILCFSASNLLMFYIFFEASLIPTLFLILGWGYQPERLQAG  141 (451)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf             99999999999999969998568637899999999999999999982799999999999999999999608979999999


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             00113554455677666554432100010034432101330378999985410344455400023201010002222344
Q gi|254780866|r  165 YKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS  244 (499)
Q Consensus       165 ~ky~i~~~~~s~~lL~g~~~l~~~~gs~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~K~~~~PfH~WlP~~y~~ap~~~s  244 (499)
T Consensus       142 ~~~~iyt~~gsl~lL~~i~~ly~~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~aF~vK~p~~P~H~WLP~Ah~eAP~~~S  221 (451)
T MTH00014        142 FYLMIYTVTASLPLLMSILLIFYTNNSLNMFMSNTYTPPSIYSMNLWWLITILAFMVKMPLYTVHLWLPKAHVEAPVAGS  221 (451)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCHHHH
T ss_conf             99999999999999999999998649699999998663445899999999999999970687201013431075977999


Q ss_pred             CCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCHHHHHHCCCCCC
Q ss_conf             33332322333211100001112233100000000012222212211100002443223321001354023331048754
Q gi|254780866|r  245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKS  324 (499)
Q Consensus       245 alls~~~~k~g~~~l~r~~~~l~~~~~~~~~~~l~~l~~~t~~~g~l~al~q~d~KrllAySsi~~~G~i~~~l~~~~~~  324 (499)
T Consensus       222 ~lLagvllK~G~YgliR~~-~~~~~~~~~~~~~l~~i~~~~~~~~~l~al~Q~DlKrllAYSSIshmG~i~~gi~~~~~~  300 (451)
T MTH00014        222 MILAGILLKLGGYGLLRMS-SLFMSINKSLSAPLSSISLVGAVITSLICIRQPDLKSLIAYSSVGHMGLMTAGAMSNTSW  300 (451)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999999999-853133699999999999999999999999983668354211798999999999974589


Q ss_pred             CCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHCCHHHHHHHHHH
Q ss_conf             22102345554210233303567777642001111002355654202332013455553010244431122899999998
Q gi|254780866|r  325 GVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQ  404 (499)
Q Consensus       325 ~~~~~~~~~~~h~~~k~~lFl~~g~i~~~~g~~~l~~l~Gl~~~~P~~~~~~~i~~lsl~G~Pp~~GF~~k~~i~~~~~~  404 (499)
T Consensus       301 g~~gal~~mi~Hgl~~s~LF~~~g~i~~~~~tr~i~~~~Gl~~~~P~~~~~~~i~~la~~g~Pp~~gF~sE~~i~~~~~~  380 (451)
T MTH00014        301 GWQGALAMMIAHGLCSSALFALANMTYETTHTRSLFLTKGLLSLFPAMTMWWFLLSAANMAAPPSINLLSEIMLLTSILS  380 (451)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf             99999999999999999999999999987577149985893400279999999999997626533619999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             65999999999999999999999999972889876555687889126899999999999997724889999
Q gi|254780866|r  405 NSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDT  475 (499)
Q Consensus       405 ~~~~~~~~~~~~~~ls~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~lGi~p~~~~~~  475 (499)
T Consensus       381 ~~~~~~~~~~~~~~lsa~Y~l~l~~~~~~G~~~~-~~~~~~~~~~re~~~~~~h~~pl~~l~~~p~~~~~w  450 (451)
T MTH00014        381 SSTSTAILLALTSFLAAAYSLFLYTSTQHGSPPS-FSNPLNLFTPRNHTLMTLHLVPLFILILKPDLITNW  450 (451)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-CCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             8699999999999999999999999987799801-040089984579999999999999999819999714