HHsearch alignment for GI: 254780866 and conserved domain: MTH00041

>MTH00041 ND2 NADH dehydrogenase subunit 2; Validated.
Probab=100.00  E-value=0  Score=408.43  Aligned_cols=302  Identities=18%  Similarity=0.301  Sum_probs=261.4

Q ss_pred             HHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             23567899986302430265404331112343103431235531234332321000113554455677666554432100
Q gi|254780866|r  111 FREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK  190 (499)
Q Consensus       111 ~~~f~~llll~~~~~~~~~~s~dl~~l~v~~El~~l~~~~Li~~~~~~~~~~aa~ky~i~~~~~s~~lL~g~~~l~~~~g  190 (499)
T Consensus         1 r~~~~~ll~~~~~G~~~~~sS~~~~~~wvglEi~sls~~~Li~~~~~~~s~EAa~KYFl~qa~aS~llL~g~~l~~~~~g   80 (350)
T MTH00041          1 RNVLLFLITNVILGTIIVVSSHHWFLIWVGLELNTLSIIPILCSNFTPRNVEATIKYFLVQAFSAAILLNGALIQAWLSG   80 (350)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             92999999999999999999999999999999999999999981899428999999999999999999999999999986


Q ss_pred             CCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CHHCCCCCCC
Q ss_conf             010034432101330378999985410344455400023201010002222344333323223332111-0000111223
Q gi|254780866|r  191 TSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGC-IRFLLPLFPL  269 (499)
Q Consensus       191 s~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~K~~~~PfH~WlP~~y~~ap~~~salls~~~~k~g~~~l-~r~~~~l~~~  269 (499)
T Consensus        81 s~~i~~~~---------~~~~~~li~~al~~Klgl~PfH~W~Pdv~~g~~~~~~~~ls-t~~Kiap~~ll~~~~~-----  145 (350)
T MTH00041         81 SWSINGPL---------NSLSSIIITIALGLKLGLFPCHFWFPDVIQGLNFLQGLILS-TWQKIAPLIILIYIIN-----  145 (350)
T ss_pred             HHHHHHHH---------HHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHH-HHHHHHHHHHHHHHHC-----
T ss_conf             23765477---------79999999999998538415988887685667289999999-9999999999999960-----


Q ss_pred             CCCCCCCHHHCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHH
Q ss_conf             31000000000122222122111000024432233210013540233310487542210234555421023330356777
Q gi|254780866|r  270 ASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGV  349 (499)
Q Consensus       270 ~~~~~~~~l~~l~~~t~~~g~l~al~q~d~KrllAySsi~~~G~i~~~l~~~~~~~~~~~~~~~~~h~~~k~~lFl~~g~  349 (499)
T Consensus       146 --~~~~~il~~l~~lS~liG~~~al~Q~~lkrlLAYSSIsh~G~ml~~~~~~~----~~~~~~~~~Y~~~~~~lf~~~--  217 (350)
T MTH00041        146 --NLNSNILITLGILSVLIGGWGGLNQTQTRKILAFSSIAHMGWIIITSAYSL----NAGIIMFLIYIIINTSIFLIF--  217 (350)
T ss_pred             --CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH--
T ss_conf             --001889999999879999999998877879999989989999999999869----999999999999999999999--


Q ss_pred             HHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q ss_conf             76420011110023556542023320134555530102444311228999999986599-99999999999999999999
Q gi|254780866|r  350 IYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNT-VAVLASFGVVLSALYSLWLY  428 (499)
Q Consensus       350 i~~~~g~~~l~~l~Gl~~~~P~~~~~~~i~~lsl~G~Pp~~GF~~k~~i~~~~~~~~~~-~~~~~~~~~~ls~~~~l~~~  428 (499)
T Consensus       218 --~~~~~~~i~~l~gl~~~~p~~~~~~~i~lLSLaGlPPl~GF~~K~lil~~li~~~~~~la~i~il~Slisl~yYLRl~  295 (350)
T MTH00041        218 --NEFNISTLSHLNRLSYLNPISAATLILVILSLGGLPPLTGFLNKFISLNCLIQNNSILLSIILIIGSLLSLFFYLRIS  295 (350)
T ss_pred             --HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             --883106099998499986999999999999987051576699999999999980839999999999999999999999


Q ss_pred             HHHHCCCCC
Q ss_conf             999728898
Q gi|254780866|r  429 RKVVFGVSK  437 (499)
Q Consensus       429 ~~~~~g~~~  437 (499)
T Consensus       296 y~~~l~~~p  304 (350)
T MTH00041        296 FNSSLILFP  304 (350)
T ss_pred             HHHHHHCCC
T ss_conf             999986899