HHsearch alignment for GI: 254780866 and conserved domain: MTH00063

>MTH00063 ND5 NADH dehydrogenase subunit 5; Provisional.
Probab=100.00  E-value=0  Score=429.75  Aligned_cols=356  Identities=19%  Similarity=0.260  Sum_probs=301.0

Q ss_pred             CCCEEEEEEEEECCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf             888189998631348540546652258899999999999999975201121--002356789998630243026540433
Q gi|254780866|r   58 GRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ--ENFREYMIAFLVLESMVIGAFLSLDML  135 (499)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~l~iD~ls~~f~~l~~~i~~l~~~ys~~~~~--~~~~~f~~llll~~~~~~~~~~s~dl~  135 (499)
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~f~fD~~Sl~f~~~V~~Is~~V~~YS~~YM~~d~~~~rF~~ll~lFv~sM~~LV~S~nll   96 (519)
T MTH00063         17 DVSFSVSLSFLSFGGCYWLINFDFDYVTFGVLLMLLICFYYALYYTFHYFGGSYASFLLNKIIVLFVLVMGILVLTGDFL   96 (519)
T ss_pred             CCEEEEEEEEEEECCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             75578998988973764899986396399999999999999999988875899984289999999999999999983599


Q ss_pred             CHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf             11123431034312355312343323210001135544556776665544321000100344321013303789999854
Q gi|254780866|r  136 LFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAF  215 (499)
Q Consensus       136 ~l~v~~El~~l~~~~Li~~~~~~~~~~aa~ky~i~~~~~s~~lL~g~~~l~~~~gs~~~~~~~~~~~~~~~~~~~~~~ll  215 (499)
T Consensus        97 ~l~lgWEglGl~SylLI~fy~~~~s~~aa~~t~l~nRiGDv~l~~~i~~~~~~~~~~----------------~~~~l~~  160 (519)
T MTH00063         97 STLIFWEYLGVVSFFLILFYDNFLSLRASVVTLVSSRFGDVCLFLLIGLSCWGGSSS----------------FLCGLFF  160 (519)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHH
T ss_conf             999999999999999983757899999999999999999999999999999862389----------------9999999


Q ss_pred             HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCHHCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCC
Q ss_conf             103444554000232010100022223443333-2322333211100001112233100000000012222212211100
Q gi|254780866|r  216 FCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA-GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSM  294 (499)
Q Consensus       216 ~~g~~~K~~~~PfH~WlP~~y~~ap~~~salls-~~~~k~g~~~l~r~~~~l~~~~~~~~~~~l~~l~~~t~~~g~l~al  294 (499)
T Consensus       161 ~l~a~tKSAQ~PF~~WLp~A-M~aPTPVSALvHSsTlVtAGVyLliR~~-~~~~--~~~~~~~l~~ig~lT~~~a~~~Al  236 (519)
T MTH00063        161 FLVVFTKSASFPFISWLLEA-MRAPTPVSSLVHSSTLVAAGVWFVMRYD-YLLG--FSWLVYFFSVCLLLTIFITGVSSL  236 (519)
T ss_pred             HHHHHHHHCCCCCHHHHHHH-HCCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHC--CHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999872407445656787-3799918899988999999999999988-9860--679999999999999999999999


Q ss_pred             EECCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHH-HHCCCCCCHHHHHHHHHHCCC
Q ss_conf             0024432233210013540233310487542210234555421023330356777764-200111100235565420233
Q gi|254780866|r  295 VQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYD-RLHTRDIFAYGGLVHNMPRYA  373 (499)
Q Consensus       295 ~q~d~KrllAySsi~~~G~i~~~l~~~~~~~~~~~~~~~~~h~~~k~~lFl~~g~i~~-~~g~~~l~~l~Gl~~~~P~~~  373 (499)
T Consensus       237 ~q~DlKKiIA~STlSQLG~M~~~lglG~---~~lA~fHL~~HA~FKAlLFl~aG~vIh~~~~~QDir~mg~~~~~~p~~~  313 (519)
T MTH00063        237 FFNDLKKIVALSTCNNISWCVLYLIYGD---VILSLFQLVSHGVSKCLLFMLVGDVMSGSGGSQASNCVYSSILYGSWNL  313 (519)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCHHHH
T ss_conf             7863889999888879999999998275---9999999999999999999855799973899515677538653125999


Q ss_pred             CCHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             20134555530102444311228999999986599-9999999999999999999999972889
Q gi|254780866|r  374 VVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNT-VAVLASFGVVLSALYSLWLYRKVVFGVS  436 (499)
Q Consensus       374 ~~~~i~~lsl~G~Pp~~GF~~k~~i~~~~~~~~~~-~~~~~~~~~~ls~~~~l~~~~~~~~g~~  436 (499)
T Consensus       314 ~~~~i~~lsL~G~PFlsGFySKDlILe~~~~~~n~~~~~l~~~~~~lT~~YS~RL~~~~~~~~~  377 (519)
T MTH00063        314 FYLFLLVLGLSGVPFIGVFFSKHFLLSSFSSVFNVVVLLLVILCVFLSYLYSFRLCLILFGVKS  377 (519)
T ss_pred             HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             9999999998442164067755999999998479999999999999999999999999984777