HHsearch alignment for GI: 254780866 and conserved domain: MTH00063
>MTH00063 ND5 NADH dehydrogenase subunit 5; Provisional.
Probab=100.00 E-value=0 Score=429.75 Aligned_cols=356 Identities=19% Similarity=0.260 Sum_probs=301.0
Q ss_pred CCCEEEEEEEEECCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 888189998631348540546652258899999999999999975201121--002356789998630243026540433
Q gi|254780866|r 58 GRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ--ENFREYMIAFLVLESMVIGAFLSLDML 135 (499)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~l~iD~ls~~f~~l~~~i~~l~~~ys~~~~~--~~~~~f~~llll~~~~~~~~~~s~dl~ 135 (499)
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~f~fD~~Sl~f~~~V~~Is~~V~~YS~~YM~~d~~~~rF~~ll~lFv~sM~~LV~S~nll 96 (519)
T MTH00063 17 DVSFSVSLSFLSFGGCYWLINFDFDYVTFGVLLMLLICFYYALYYTFHYFGGSYASFLLNKIIVLFVLVMGILVLTGDFL 96 (519)
T ss_pred CCEEEEEEEEEEECCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 75578998988973764899986396399999999999999999988875899984289999999999999999983599
Q ss_pred CHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 11123431034312355312343323210001135544556776665544321000100344321013303789999854
Q gi|254780866|r 136 LFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAF 215 (499)
Q Consensus 136 ~l~v~~El~~l~~~~Li~~~~~~~~~~aa~ky~i~~~~~s~~lL~g~~~l~~~~gs~~~~~~~~~~~~~~~~~~~~~~ll 215 (499)
T Consensus 97 ~l~lgWEglGl~SylLI~fy~~~~s~~aa~~t~l~nRiGDv~l~~~i~~~~~~~~~~----------------~~~~l~~ 160 (519)
T MTH00063 97 STLIFWEYLGVVSFFLILFYDNFLSLRASVVTLVSSRFGDVCLFLLIGLSCWGGSSS----------------FLCGLFF 160 (519)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHH
T ss_conf 999999999999999983757899999999999999999999999999999862389----------------9999999
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCHHCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCC
Q ss_conf 103444554000232010100022223443333-2322333211100001112233100000000012222212211100
Q gi|254780866|r 216 FCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA-GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSM 294 (499)
Q Consensus 216 ~~g~~~K~~~~PfH~WlP~~y~~ap~~~salls-~~~~k~g~~~l~r~~~~l~~~~~~~~~~~l~~l~~~t~~~g~l~al 294 (499)
T Consensus 161 ~l~a~tKSAQ~PF~~WLp~A-M~aPTPVSALvHSsTlVtAGVyLliR~~-~~~~--~~~~~~~l~~ig~lT~~~a~~~Al 236 (519)
T MTH00063 161 FLVVFTKSASFPFISWLLEA-MRAPTPVSSLVHSSTLVAAGVWFVMRYD-YLLG--FSWLVYFFSVCLLLTIFITGVSSL 236 (519)
T ss_pred HHHHHHHHCCCCCHHHHHHH-HCCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHC--CHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999872407445656787-3799918899988999999999999988-9860--679999999999999999999999
Q ss_pred EECCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHH-HHCCCCCCHHHHHHHHHHCCC
Q ss_conf 0024432233210013540233310487542210234555421023330356777764-200111100235565420233
Q gi|254780866|r 295 VQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYD-RLHTRDIFAYGGLVHNMPRYA 373 (499)
Q Consensus 295 ~q~d~KrllAySsi~~~G~i~~~l~~~~~~~~~~~~~~~~~h~~~k~~lFl~~g~i~~-~~g~~~l~~l~Gl~~~~P~~~ 373 (499)
T Consensus 237 ~q~DlKKiIA~STlSQLG~M~~~lglG~---~~lA~fHL~~HA~FKAlLFl~aG~vIh~~~~~QDir~mg~~~~~~p~~~ 313 (519)
T MTH00063 237 FFNDLKKIVALSTCNNISWCVLYLIYGD---VILSLFQLVSHGVSKCLLFMLVGDVMSGSGGSQASNCVYSSILYGSWNL 313 (519)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCHHHH
T ss_conf 7863889999888879999999998275---9999999999999999999855799973899515677538653125999
Q ss_pred CCHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 20134555530102444311228999999986599-9999999999999999999999972889
Q gi|254780866|r 374 VVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNT-VAVLASFGVVLSALYSLWLYRKVVFGVS 436 (499)
Q Consensus 374 ~~~~i~~lsl~G~Pp~~GF~~k~~i~~~~~~~~~~-~~~~~~~~~~ls~~~~l~~~~~~~~g~~ 436 (499)
T Consensus 314 ~~~~i~~lsL~G~PFlsGFySKDlILe~~~~~~n~~~~~l~~~~~~lT~~YS~RL~~~~~~~~~ 377 (519)
T MTH00063 314 FYLFLLVLGLSGVPFIGVFFSKHFLLSSFSSVFNVVVLLLVILCVFLSYLYSFRLCLILFGVKS 377 (519)
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 9999999998442164067755999999998479999999999999999999999999984777