HHsearch alignment for GI: 254780866 and conserved domain: MTH00066
>MTH00066 ND5 NADH dehydrogenase subunit 5; Provisional.
Probab=100.00 E-value=0 Score=556.24 Aligned_cols=399 Identities=20% Similarity=0.334 Sum_probs=347.8
Q ss_pred EEEEECCC---CCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHHCCCEEEEECCCCCHHH
Q ss_conf 98631348---540546652258899999999999999975201121--0023567899986302430265404331112
Q gi|254780866|r 65 IEYYHWID---YFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ--ENFREYMIAFLVLESMVIGAFLSLDMLLFYI 139 (499)
Q Consensus 65 ~~~~~~~~---~~~~~~l~iD~ls~~f~~l~~~i~~l~~~ys~~~~~--~~~~~f~~llll~~~~~~~~~~s~dl~~l~v 139 (499)
T Consensus 61 ~~~~~w~~~~~~~~~~~f~~D~~S~~f~~vv~~Is~~V~~yS~~YM~~d~~~~rF~~~l~lF~~sMl~lv~s~Nl~~lfi 140 (598)
T MTH00066 61 TTNFHWMSINNFNINSSFKFDQYSILFLPIALFVTWSILEFAIWYMHSDPKINRFFKYLLIFLIAMMILVTANNLFQLFI 140 (598)
T ss_pred EEEEECCEECCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 77525402477361777532862899999999999999999789707899814899999999999999999805999999
Q ss_pred HHHHCCCCCEEEEEECC-CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHCC
Q ss_conf 34310343123553123-43323210001135544556776665544321000100344321013303789999854103
Q gi|254780866|r 140 FFEASLIPMFVIIGVWG-GSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCS 218 (499)
Q Consensus 140 ~~El~~l~~~~Li~~~~-~~~~~~aa~ky~i~~~~~s~~lL~g~~~l~~~~gs~~~~~~~~~~~~~~~~~~~~~~ll~~g 218 (499)
T Consensus 141 gWEgvgl~SylLI~~~~~~~~a~~aa~~a~l~nriGd~~lll~i~~l~~~~gs~~~~~~~~~~~~----~~~~~l~lila 216 (598)
T MTH00066 141 GWEGVGIMSFLLIGWWHARSDANTAALQAVLYNRVGDIGLILSMAWLAMNTNSWELQQIFLLYDN----STLPLLGLILA 216 (598)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCH----HHHHHHHHHHH
T ss_conf 99999999999998874976789999999999977599999999999998398109999874640----69999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCHHCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCEEC
Q ss_conf 44455400023201010002222344333-32322333211100001112233100000000012222212211100002
Q gi|254780866|r 219 FAIKIPMFPFHTWLPNAHVQAPTAGSVFL-AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQT 297 (499)
Q Consensus 219 ~~~K~~~~PfH~WlP~~y~~ap~~~sall-s~~~~k~g~~~l~r~~~~l~~~~~~~~~~~l~~l~~~t~~~g~l~al~q~ 297 (499)
T Consensus 217 a~~KSAQfP~h~WLP~A-MeaPTPVSALlHSsTmV~AGVylLiR~~-~~~~~-~~~~~~~~l~lG~lT~l~a~~~Al~Q~ 293 (598)
T MTH00066 217 ATGKSAQFGLHPWLPAA-MEGPTPVSALLHSSTMVVAGIFLLIRFH-PLLEN-NQTALTICLCLGALTTLFTAACALTQN 293 (598)
T ss_pred HHHHHCCCCCCHHHHHH-HCCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 98743318670422666-1489960233312589885088989988-78741-699999999999999999999998632
Q ss_pred CCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHH-HCCCCCCHHHHHHHHHHCCCCCH
Q ss_conf 44322332100135402333104875422102345554210233303567777642-00111100235565420233201
Q gi|254780866|r 298 DIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDR-LHTRDIFAYGGLVHNMPRYAVVM 376 (499)
Q Consensus 298 d~KrllAySsi~~~G~i~~~l~~~~~~~~~~~~~~~~~h~~~k~~lFl~~g~i~~~-~g~~~l~~l~Gl~~~~P~~~~~~ 376 (499)
T Consensus 294 DiKkilAyST~SQLG~M~~~iglg~~---~lA~fHl~~HA~FKAlLFL~aG~iIh~~~~~qDir~mGgl~~~mP~T~~~~ 370 (598)
T MTH00066 294 DIKKIVAFSTSSQLGLMMVTIGLNQP---QLAFFHICTHAFFKAMLFLCSGSIIHSLNDEQDIRKMGGLQNMLPMTTSCL 370 (598)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHH
T ss_conf 18899998999899999999872519---899999999999999999830489863577135988089887766999999
Q ss_pred HHHHHHHCCCHHHHHHCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 345555301024443112289999999865--999999999999999999999999972889876555687889126899
Q gi|254780866|r 377 MVFTMANMGLPGTSGFIGEFLVIMSVFQNS--NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCM 454 (499)
Q Consensus 377 ~i~~lsl~G~Pp~~GF~~k~~i~~~~~~~~--~~~~~~~~~~~~ls~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 454 (499)
T Consensus 371 ~ig~laL~G~PflsGF~SKD~Ile~~~~~~~n~~~~~~~~~~~~lT~~Ys~Rl~~~~~~~~~~~~~~~~~~E~~~~m~~p 450 (598)
T MTH00066 371 TIGSLALTGTPFLAGFFSKDAIIEAMNTSNLNSWALILTLIATSFTAVYSFRIIYFSSMKFPRSLPLSPINENNKLIINP 450 (598)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 99999996440432887589999998857458999999999999999999999999964899888777878896789999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999977248899
Q gi|254780866|r 455 VYPIAVLTVFFGIYPVPIR 473 (499)
Q Consensus 455 ~~~l~~~~i~lGi~p~~~~ 473 (499)
T Consensus 451 l~~La~gsI~~G~~~~~~~ 469 (598)
T MTH00066 451 IKRLAWGSIIAGLLIINNI 469 (598)
T ss_pred HHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999987