HHsearch alignment for GI: 254780866 and conserved domain: MTH00105
>MTH00105 ND2 NADH dehydrogenase subunit 2; Provisional.
Probab=100.00 E-value=0 Score=400.76 Aligned_cols=337 Identities=17% Similarity=0.273 Sum_probs=266.5
Q ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 23567899986302430265404331112343103431235531234332321000113554455677666554432100
Q gi|254780866|r 111 FREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190 (499)
Q Consensus 111 ~~~f~~llll~~~~~~~~~~s~dl~~l~v~~El~~l~~~~Li~~~~~~~~~~aa~ky~i~~~~~s~~lL~g~~~l~~~~g 190 (499)
T Consensus 3 ~~~~ll~l~~~~~G~l~~~sS~n~~~l~v~lEl~~ls~~~l~~~~~~~~s~eaa~KYfli~~~~S~i~L~gi~~~~~~~g 82 (345)
T MTH00105 3 PLILIIILSTLILGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMYSG 82 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 69999999999999999999988999999999999999999982899428999999999999999999999999999983
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCC
Q ss_conf 01003443210133037899998541034445540002320101000222234433332322333211100001112233
Q gi|254780866|r 191 TSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLA 270 (499)
Q Consensus 191 s~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~K~~~~PfH~WlP~~y~~ap~~~salls~~~~k~g~~~l~r~~~~l~~~~ 270 (499)
T Consensus 83 ~~~~~~~~~~---------~~~~li~~~l~~Klg~~PfH~WlPdv~~~~~~~~~~~l~-t~~Kia~l~il~~~---~~~- 148 (345)
T MTH00105 83 QWTITKITNP---------LASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGLILL-TWQKLAPLSILYQI---SPS- 148 (345)
T ss_pred CHHHHHHHHH---------HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH---HHH-
T ss_conf 7578898779---------999999999999980341487798999714799999999-99999999999999---987-
Q ss_pred CCCCCCHHHCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 10000000001222221221110000244322332100135402333104875422102345554210233303567777
Q gi|254780866|r 271 SQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVI 350 (499)
Q Consensus 271 ~~~~~~~l~~l~~~t~~~g~l~al~q~d~KrllAySsi~~~G~i~~~l~~~~~~~~~~~~~~~~~h~~~k~~lFl~~g~i 350 (499)
T Consensus 149 --~~~~il~~~~~lS~i~G~~~al~Q~~lKrlLAYSSIsh~G~ml~~l~~~~----~~~~~y~~~Y~~~~~~lf~~~--- 219 (345)
T MTH00105 149 --INPNLLLTMAILSILVGGWGGLNQTQLRKILAYSSIAHMGWMTAILTYNP----TLTLLNLTIYIIMTLTMFMLL--- 219 (345)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH---
T ss_conf --30999999999999999999986601318999999988999999999849----999999999999999999999---
Q ss_pred HHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 642001111002355654202332013455553010244431122899999998659-9999999999999999999999
Q gi|254780866|r 351 YDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-TVAVLASFGVVLSALYSLWLYR 429 (499)
Q Consensus 351 ~~~~g~~~l~~l~Gl~~~~P~~~~~~~i~~lsl~G~Pp~~GF~~k~~i~~~~~~~~~-~~~~~~~~~~~ls~~~~l~~~~ 429 (499)
T Consensus 220 -~~~~~~~i~~l~gl~~~~p~~~~~~~i~llSLaGiPP~~GF~~K~~ii~~~i~~~~~~l~~ilil~S~isl~yYlRii~ 298 (345)
T MTH00105 220 -MLNSSTTTLSLSHTWNKTPLMTSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIIMPTLMAITALLNLYFYMRLIY 298 (345)
T ss_pred -HHHCCCCHHHHHCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf -9957662998857553139999999999999853226568999999999999818499999999999999999999999
Q ss_pred HHHCCCCCCCC--CCCCCCCCCCHHHHHHHHHH-HHHHHHHHHHH
Q ss_conf 99728898765--55687889126899999999-99999772488
Q gi|254780866|r 430 KVVFGVSKCEK--VQQLKDLSLRERCMVYPIAV-LTVFFGIYPVP 471 (499)
Q Consensus 430 ~~~~g~~~~~~--~~~~~~~~~~~~~~~~~l~~-~~i~lGi~p~~ 471 (499)
T Consensus 299 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~ 343 (345)
T MTH00105 299 STSLTMFPSTNNMKMKWQFENTKPTTLLPTLIILSTMLLPLTPML 343 (345)
T ss_pred HHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999967999997646117468984189999999999998772663