HHsearch alignment for GI: 254780866 and conserved domain: MTH00110
>MTH00110 ND4 NADH dehydrogenase subunit 4; Provisional.
Probab=100.00 E-value=0 Score=569.71 Aligned_cols=398 Identities=34% Similarity=0.593 Sum_probs=361.9
Q ss_pred EEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCCEEE
Q ss_conf 5466522588999999999999999752011210----023567899986302430265404331112343103431235
Q gi|254780866|r 76 SYHLGVDGISILLVVLTTFLTPFCILSSWKSIQE----NFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVI 151 (499)
Q Consensus 76 ~~~l~iD~ls~~f~~l~~~i~~l~~~ys~~~~~~----~~~~f~~llll~~~~~~~~~~s~dl~~l~v~~El~~l~~~~L 151 (499)
T Consensus 53 ~~~~~~D~lS~~li~Ls~~i~~l~~laS~~~~~~~~~~~~~~f~~~~l~l~~~l~~~F~~~dl~~FYiffE~~LIP~~~L 132 (459)
T MTH00110 53 SLLFFSDSLSTPLLILTTWLLPLMLMASQNHLSKEPLTRKKLYITMLILLQLFLIMTFTATELIMFYILFEATLIPTLII 132 (459)
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 15760148689999999999999999968988417512567999999999999999999848999999999999999999
Q ss_pred EEECCC-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHC-CCH-HHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 531234-332321000113554455677666554432100010034432101-330-37899998541034445540002
Q gi|254780866|r 152 IGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSK-FPF-SIQYWMWIAFFCSFAIKIPMFPF 228 (499)
Q Consensus 152 i~~~~~-~~~~~aa~ky~i~~~~~s~~lL~g~~~l~~~~gs~~~~~~~~~~~-~~~-~~~~~~~~ll~~g~~~K~~~~Pf 228 (499)
T Consensus 133 I~~wG~~~er~~A~~~~~~yT~~gSl~lL~~i~~l~~~~gs~~~~~~~~~~~~~~~~~~~~~~~l~~~laF~vK~p~fp~ 212 (459)
T MTH00110 133 ITRWGNQTERLNAGLYFLFYTLVGSLPLLVALLYIQNNLGSLNFLLLQLWAQPLPNSWSNNLLWLACMMAFMVKMPLYGL 212 (459)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99849957999999999999999999999999999997598609999988751450479999999999999997488888
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCEECCCCCCCCCCCC
Q ss_conf 32010100022223443333232233321110000111223310000000001222221221110000244322332100
Q gi|254780866|r 229 HTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308 (499)
Q Consensus 229 H~WlP~~y~~ap~~~salls~~~~k~g~~~l~r~~~~l~~~~~~~~~~~l~~l~~~t~~~g~l~al~q~d~KrllAySsi 308 (499)
T Consensus 213 H~WLP~AhveAP~~gSmiLAgvLlKlG~YGl~R~~~~~~~~~-~~~~~~~i~l~l~g~i~~s~~~l~Q~DlK~LiAYSSV 291 (459)
T MTH00110 213 HLWLPKAHVEAPIAGSMVLAAILLKLGGYGMMRITILLNPLT-EFMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSV 291 (459)
T ss_pred CCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 665725325097599999999999998999999999984789-9999999999999999999999999999999999779
Q ss_pred CCCCHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCHH
Q ss_conf 13540233310487542210234555421023330356777764200111100235565420233201345555301024
Q gi|254780866|r 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPG 388 (499)
Q Consensus 309 ~~~G~i~~~l~~~~~~~~~~~~~~~~~h~~~k~~lFl~~g~i~~~~g~~~l~~l~Gl~~~~P~~~~~~~i~~lsl~G~Pp 388 (499)
T Consensus 292 sHMG~v~~gi~~~~~~g~~Ga~~~miaHgl~ss~LF~lag~~y~r~~tR~l~~~~Gl~~~~P~~~~~~~l~~lan~g~Pp 371 (459)
T MTH00110 292 SHMALVIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQTLLPLMATWWLLASLTNLALPP 371 (459)
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHHHCCHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99999999999755899999999999999999999998879988618606787198045658999999999998717987
Q ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 44311228999999986599999999999999999999999997288987655568788912689999999999999772
Q gi|254780866|r 389 TSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIY 468 (499)
Q Consensus 389 ~~GF~~k~~i~~~~~~~~~~~~~~~~~~~~ls~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~lGi~ 468 (499)
T Consensus 372 ~~~F~gE~~il~~~~~~~~~~~~~~~~~~~lsa~Ysl~l~~~~~~G~~~~~-~~~~~~~~~re~~~~~~h~~pl~~l~l~ 450 (459)
T MTH00110 372 TINLIGELFVIMSSFSWSNITIILMGLNIVITALYSLYMLITTQRGKLTHH-INNIKPSFTRENTLMALHLLPLLLLSLN 450 (459)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 464899999999999985999999999999999999999999877998021-2478996088999999999999999978
Q ss_pred HHHHHHH
Q ss_conf 4889999
Q gi|254780866|r 469 PVPIRDT 475 (499)
Q Consensus 469 p~~~~~~ 475 (499)
T Consensus 451 P~~ilg~ 457 (459)
T MTH00110 451 PKIILGP 457 (459)
T ss_pred HHHHHCC
T ss_conf 7987189