HHsearch alignment for GI: 254780866 and conserved domain: MTH00144
>MTH00144 ND2 NADH dehydrogenase subunit 2; Provisional.
Probab=100.00 E-value=0 Score=390.16 Aligned_cols=297 Identities=20% Similarity=0.323 Sum_probs=255.4
Q ss_pred HHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 02356789998630243026540433111234310343123553123433232100011355445567766655443210
Q gi|254780866|r 110 NFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEK 189 (499)
Q Consensus 110 ~~~~f~~llll~~~~~~~~~~s~dl~~l~v~~El~~l~~~~Li~~~~~~~~~~aa~ky~i~~~~~s~~lL~g~~~l~~~~ 189 (499)
T Consensus 4 ~~p~~~~f~~l~~~g~~~~~ss~~~~~l~v~lEl~sl~~~~Li~~~~~~~s~eaa~KYfl~~~~~S~~~L~gi~l~y~~~ 83 (329)
T MTH00144 4 MSPSNLLFLFVMLMGTLLSLSSSHWLGVWVGLELNLIGFLPLLNIKGKSSEKESSMKYFIIQSLGSSLLIMGSVIMYNMS 83 (329)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 88799999999999999999998999999999999999999997599963899999999999999999999999999988
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCC
Q ss_conf 00100344321013303789999854103444554000232010100022223443333232233321110000111223
Q gi|254780866|r 190 KTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPL 269 (499)
Q Consensus 190 gs~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~K~~~~PfH~WlP~~y~~ap~~~salls~~~~k~g~~~l~r~~~~l~~~ 269 (499)
T Consensus 84 g~~~~----------------~~~li~~gl~~Klg~~PfH~Wlpdv~~~~~~~~~~~l~t~-~Ki~~~~~l~~~~~---- 142 (329)
T MTH00144 84 FSSSF----------------FSLLLLSGLVLKLGGFPFHFWVPSVTKGLSWLSLFLMLTW-QKVAPLFLLSLILD---- 142 (329)
T ss_pred HCHHH----------------HHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHH-HHHHHHHHHHHHHH----
T ss_conf 56699----------------9999999999987544176407889814879999999999-99999999999961----
Q ss_pred CCCCCCCHHHCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 31000000000122222122111000024432233210013540233310487542210234555421023330356777
Q gi|254780866|r 270 ASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGV 349 (499)
Q Consensus 270 ~~~~~~~~l~~l~~~t~~~g~l~al~q~d~KrllAySsi~~~G~i~~~l~~~~~~~~~~~~~~~~~h~~~k~~lFl~~g~ 349 (499)
T Consensus 143 -~~~~~~~l~~l~~lS~iiG~l~al~q~~iKrlLAYSSI~~~G~ml~~i~~~~----~~~~~y~~~y~~~~~~l~~~~-- 215 (329)
T MTH00144 143 -LNLLLMSLMVISVLSAIVGSIGGLNQTSVRLMLAYSSISHLGWMLSGILIGS----SLMWGYFLIYSLSLGFLFYSL-- 215 (329)
T ss_pred -CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH--
T ss_conf -2107999999999999999999874421327889868988999999999869----999999999999999999999--
Q ss_pred HHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7642001111002355654202332013455553010244431122899999998659-999999999999999999999
Q gi|254780866|r 350 IYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-TVAVLASFGVVLSALYSLWLY 428 (499)
Q Consensus 350 i~~~~g~~~l~~l~Gl~~~~P~~~~~~~i~~lsl~G~Pp~~GF~~k~~i~~~~~~~~~-~~~~~~~~~~~ls~~~~l~~~ 428 (499)
T Consensus 216 -----~~~~~~~~~~~~~~~~~~~~~~~i~~lSlaGiPP~~GF~~K~~il~~~~~~~~~~l~~i~ll~S~is~~yYlri~ 290 (329)
T MTH00144 216 -----SGGDCLSMKSLTSLNPSNNLSISLLLLSLGGLPPFLGFLSKLLVLLSSMEMNMILLIVALILGSLISLYFYLNFF 290 (329)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf -----987999998798871999999999999998654787799999999999985859999999999999999999999
Q ss_pred HHHHCCCCCCC
Q ss_conf 99972889876
Q gi|254780866|r 429 RKVVFGVSKCE 439 (499)
Q Consensus 429 ~~~~~g~~~~~ 439 (499)
T Consensus 291 ~~~~~~~~~~~ 301 (329)
T MTH00144 291 YSLVIKSYFLS 301 (329)
T ss_pred HHHHHHCCCCC
T ss_conf 99998679999