HHsearch alignment for GI: 254780866 and conserved domain: MTH00163
>MTH00163 ND4 NADH dehydrogenase subunit 4; Provisional.
Probab=100.00 E-value=0 Score=530.57 Aligned_cols=394 Identities=32% Similarity=0.542 Sum_probs=357.6
Q ss_pred EEEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCCEEEE
Q ss_conf 0546652258899999999999999975201121--00235678999863024302654043311123431034312355
Q gi|254780866|r 75 CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ--ENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVII 152 (499)
Q Consensus 75 ~~~~l~iD~ls~~f~~l~~~i~~l~~~ys~~~~~--~~~~~f~~llll~~~~~~~~~~s~dl~~l~v~~El~~l~~~~Li 152 (499)
T Consensus 48 ~s~~f~~D~lS~~li~Ls~~I~~l~~l~S~~~~~~~~~~~~f~~l~l~l~~~l~~~F~s~nl~~FyiffE~~lip~~~LI 127 (446)
T MTH00163 48 ISYFFGVDLLSFGLILLSLWICLLMILSSESVYKYNNYSNLFLFLVLLLLLFLFLTFSSMNLLLFYIFFESSLIPTLILI 127 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 74998207868999999999999999996688742640689999999999999999999689999999999999999999
Q ss_pred EECC-CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 3123-433232100011355445567766655443210001003443210133037899998541034445540002320
Q gi|254780866|r 153 GVWG-GSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTW 231 (499)
Q Consensus 153 ~~~~-~~~~~~aa~ky~i~~~~~s~~lL~g~~~l~~~~gs~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~K~~~~PfH~W 231 (499)
T Consensus 128 ~~wG~~~er~~A~~y~~~yt~~~Sl~lL~~i~~l~~~~gs~~~~~~~~~----~~~~~~~~~~~~laF~vK~p~fp~H~W 203 (446)
T MTH00163 128 LGWGYQPERLQAGIYLLFYTLFASLPLLVGIFYLYNSLGSLSFYLLNSF----GFNSFLLYLSMILAFLVKMPMFLVHLW 203 (446)
T ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH----HHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 9838977889999999999999999999999999997272379999875----779999999999999996480446340
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCC
Q ss_conf 10100022223443333232233321110000111223310000000001222221221110000244322332100135
Q gi|254780866|r 232 LPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM 311 (499)
Q Consensus 232 lP~~y~~ap~~~salls~~~~k~g~~~l~r~~~~l~~~~~~~~~~~l~~l~~~t~~~g~l~al~q~d~KrllAySsi~~~ 311 (499)
T Consensus 204 LP~AhveAP~~gSmiLAgvllKlG~YGliR~~-~~~~~~~~~~~~~l~~l~l~~~~~~sl~al~Q~DlK~LiAYSSVsHM 282 (446)
T MTH00163 204 LPKAHVEAPVSGSMILAGVLLKLGGYGLLRVM-PLFSSLGLKFSYIWISISLVGGVLVSLICLRQTDLKSLIAYSSVAHM 282 (446)
T ss_pred CCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 50655238814689999999988887789999-87000578999999999999999999999987637899999889999
Q ss_pred CHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHH
Q ss_conf 40233310487542210234555421023330356777764200111100235565420233201345555301024443
Q gi|254780866|r 312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSG 391 (499)
Q Consensus 312 G~i~~~l~~~~~~~~~~~~~~~~~h~~~k~~lFl~~g~i~~~~g~~~l~~l~Gl~~~~P~~~~~~~i~~lsl~G~Pp~~G 391 (499)
T Consensus 283 G~v~~gi~~~~~~g~~gal~~mi~Hgl~ss~LF~~~g~~y~~~~sR~i~~~~Gl~~~~P~l~~~~~l~~~~n~g~Pp~~~ 362 (446)
T MTH00163 283 GLVLGGLMTFSYWGLNGSLLMMIAHGLCSSGLFCLANIVYERLGSRSLLINKGLLNFMPSMSLWWFLLSSSNMAAPPSLN 362 (446)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 99999999825999999999999999999999999999999707622998499476628999999999999844787441
Q ss_pred HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 11228999999986599999999999999999999999997288987655568788912689999999999999772488
Q gi|254780866|r 392 FIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVP 471 (499)
Q Consensus 392 F~~k~~i~~~~~~~~~~~~~~~~~~~~ls~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~lGi~p~~ 471 (499)
T Consensus 363 F~gE~~i~~s~~~~~~~~~~~~~~~~~ls~~Ysl~ly~~~~hG~~~~-~~~~~~~~~~~e~~~l~~H~~Pl~~l~~~~~~ 441 (446)
T MTH00163 363 LLGEISLLNSILSWSWLSMIMLMLLSFFSAAYSLYLYSYSQHGKYYS-GLYSCSSGKVREYLLLFLHWFPLNLLILKSDL 441 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH-HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999699999999999999999999999965699756-32178987189999999999999999983999
Q ss_pred HHH
Q ss_conf 999
Q gi|254780866|r 472 IRD 474 (499)
Q Consensus 472 ~~~ 474 (499)
T Consensus 442 ~~~ 444 (446)
T MTH00163 442 FML 444 (446)
T ss_pred HHH
T ss_conf 883