HHsearch alignment for GI: 254780866 and conserved domain: MTH00163

>MTH00163 ND4 NADH dehydrogenase subunit 4; Provisional.
Probab=100.00  E-value=0  Score=530.57  Aligned_cols=394  Identities=32%  Similarity=0.542  Sum_probs=357.6

Q ss_pred             EEEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCCEEEE
Q ss_conf             0546652258899999999999999975201121--00235678999863024302654043311123431034312355
Q gi|254780866|r   75 CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQ--ENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVII  152 (499)
Q Consensus        75 ~~~~l~iD~ls~~f~~l~~~i~~l~~~ys~~~~~--~~~~~f~~llll~~~~~~~~~~s~dl~~l~v~~El~~l~~~~Li  152 (499)
T Consensus        48 ~s~~f~~D~lS~~li~Ls~~I~~l~~l~S~~~~~~~~~~~~f~~l~l~l~~~l~~~F~s~nl~~FyiffE~~lip~~~LI  127 (446)
T MTH00163         48 ISYFFGVDLLSFGLILLSLWICLLMILSSESVYKYNNYSNLFLFLVLLLLLFLFLTFSSMNLLLFYIFFESSLIPTLILI  127 (446)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             74998207868999999999999999996688742640689999999999999999999689999999999999999999


Q ss_pred             EECC-CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf             3123-433232100011355445567766655443210001003443210133037899998541034445540002320
Q gi|254780866|r  153 GVWG-GSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTW  231 (499)
Q Consensus       153 ~~~~-~~~~~~aa~ky~i~~~~~s~~lL~g~~~l~~~~gs~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~K~~~~PfH~W  231 (499)
T Consensus       128 ~~wG~~~er~~A~~y~~~yt~~~Sl~lL~~i~~l~~~~gs~~~~~~~~~----~~~~~~~~~~~~laF~vK~p~fp~H~W  203 (446)
T MTH00163        128 LGWGYQPERLQAGIYLLFYTLFASLPLLVGIFYLYNSLGSLSFYLLNSF----GFNSFLLYLSMILAFLVKMPMFLVHLW  203 (446)
T ss_pred             HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH----HHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf             9838977889999999999999999999999999997272379999875----779999999999999996480446340


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCC
Q ss_conf             10100022223443333232233321110000111223310000000001222221221110000244322332100135
Q gi|254780866|r  232 LPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHM  311 (499)
Q Consensus       232 lP~~y~~ap~~~salls~~~~k~g~~~l~r~~~~l~~~~~~~~~~~l~~l~~~t~~~g~l~al~q~d~KrllAySsi~~~  311 (499)
T Consensus       204 LP~AhveAP~~gSmiLAgvllKlG~YGliR~~-~~~~~~~~~~~~~l~~l~l~~~~~~sl~al~Q~DlK~LiAYSSVsHM  282 (446)
T MTH00163        204 LPKAHVEAPVSGSMILAGVLLKLGGYGLLRVM-PLFSSLGLKFSYIWISISLVGGVLVSLICLRQTDLKSLIAYSSVAHM  282 (446)
T ss_pred             CCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             50655238814689999999988887789999-87000578999999999999999999999987637899999889999


Q ss_pred             CHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHH
Q ss_conf             40233310487542210234555421023330356777764200111100235565420233201345555301024443
Q gi|254780866|r  312 GYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSG  391 (499)
Q Consensus       312 G~i~~~l~~~~~~~~~~~~~~~~~h~~~k~~lFl~~g~i~~~~g~~~l~~l~Gl~~~~P~~~~~~~i~~lsl~G~Pp~~G  391 (499)
T Consensus       283 G~v~~gi~~~~~~g~~gal~~mi~Hgl~ss~LF~~~g~~y~~~~sR~i~~~~Gl~~~~P~l~~~~~l~~~~n~g~Pp~~~  362 (446)
T MTH00163        283 GLVLGGLMTFSYWGLNGSLLMMIAHGLCSSGLFCLANIVYERLGSRSLLINKGLLNFMPSMSLWWFLLSSSNMAAPPSLN  362 (446)
T ss_pred             HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             99999999825999999999999999999999999999999707622998499476628999999999999844787441


Q ss_pred             HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             11228999999986599999999999999999999999997288987655568788912689999999999999772488
Q gi|254780866|r  392 FIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVP  471 (499)
Q Consensus       392 F~~k~~i~~~~~~~~~~~~~~~~~~~~ls~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~lGi~p~~  471 (499)
T Consensus       363 F~gE~~i~~s~~~~~~~~~~~~~~~~~ls~~Ysl~ly~~~~hG~~~~-~~~~~~~~~~~e~~~l~~H~~Pl~~l~~~~~~  441 (446)
T MTH00163        363 LLGEISLLNSILSWSWLSMIMLMLLSFFSAAYSLYLYSYSQHGKYYS-GLYSCSSGKVREYLLLFLHWFPLNLLILKSDL  441 (446)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH-HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999699999999999999999999999965699756-32178987189999999999999999983999


Q ss_pred             HHH
Q ss_conf             999
Q gi|254780866|r  472 IRD  474 (499)
Q Consensus       472 ~~~  474 (499)
T Consensus       442 ~~~  444 (446)
T MTH00163        442 FML  444 (446)
T ss_pred             HHH
T ss_conf             883