HHsearch alignment for GI: 254780866 and conserved domain: MTH00165
>MTH00165 ND5 NADH dehydrogenase subunit 5; Provisional.
Probab=100.00 E-value=0 Score=510.25 Aligned_cols=407 Identities=22% Similarity=0.300 Sum_probs=349.0
Q ss_pred CCCCCEEEEEEEEECCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHHCCCEEEEECC
Q ss_conf 088881899986313485405466522588999999999999999752011210--023567899986302430265404
Q gi|254780866|r 56 DKGRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQE--NFREYMIAFLVLESMVIGAFLSLD 133 (499)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~l~iD~ls~~f~~l~~~i~~l~~~ys~~~~~~--~~~~f~~llll~~~~~~~~~~s~d 133 (499)
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~D~~S~~f~~~v~~Is~~V~~yS~~YM~~d~~~~rF~~~l~lFv~sM~~lv~s~n 104 (571)
T MTH00165 25 LNDYSLFIEWELFSLNSSSIVMTFLFDWMSLLFMSFVLFISSMVIYYSKSYMSGDKNINRFIYLVLLFVLSMMLLIISPN 104 (571)
T ss_pred HCCCEEEEEEEEEEECCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 75815689644201267063887734852899999999999999999889837999842899999999999999999804
Q ss_pred CCCHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHH
Q ss_conf 33111234310343123553123433232100011355445567766655443210001003443210133037899998
Q gi|254780866|r 134 MLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWI 213 (499)
Q Consensus 134 l~~l~v~~El~~l~~~~Li~~~~~~~~~~aa~ky~i~~~~~s~~lL~g~~~l~~~~gs~~~~~~~~~~~~~~~~~~~~~~ 213 (499)
T Consensus 105 l~~l~lgWEglGl~SylLI~fy~~~~s~~a~~~t~l~nRiGD~~ll~~i~~~~-~~gs~~~~~~~~~~~~~-~~~~~~~~ 182 (571)
T MTH00165 105 LISILLGWDGLGLVSYCLVIYYQNVKSYNAGMLTALSNRIGDVAILLSIAWML-NFGSWNFIFYLDSMSNS-FEMLLIGF 182 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCHHHHHHHHHCCC-HHHHHHHH
T ss_conf 99999999999999999981368868999999999999876999999999999-95772699998763033-08999999
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCHHCCCCCCCCCCCCCCHHHCCCCCCCCCCCCC
Q ss_conf 5410344455400023201010002222344333-323223332111000011122331000000000122222122111
Q gi|254780866|r 214 AFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL-AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLV 292 (499)
Q Consensus 214 ll~~g~~~K~~~~PfH~WlP~~y~~ap~~~sall-s~~~~k~g~~~l~r~~~~l~~~~~~~~~~~l~~l~~~t~~~g~l~ 292 (499)
T Consensus 183 ll~laa~~KSAQ~Pfh~WLP~AM-~aPTPVSALvHssTlVtAGvylliR~~-~~~~~--~~~~~~l~~ig~~T~l~a~~~ 258 (571)
T MTH00165 183 LIILAAMTKSAQIPFSAWLPAAM-AAPTPVSALVHSSTLVTAGVYLLIRFN-PLLSG--SFFSKLLLLISSLTMFMAGLG 258 (571)
T ss_pred HHHHHHHHHHCCCCCCHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHCC--HHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999988732177622116764-589728999987689988899999988-98521--689999999999999999999
Q ss_pred CCEECCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHH-HCCCCCCHHHHHHHHHHC
Q ss_conf 0000244322332100135402333104875422102345554210233303567777642-001111002355654202
Q gi|254780866|r 293 SMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDR-LHTRDIFAYGGLVHNMPR 371 (499)
Q Consensus 293 al~q~d~KrllAySsi~~~G~i~~~l~~~~~~~~~~~~~~~~~h~~~k~~lFl~~g~i~~~-~g~~~l~~l~Gl~~~~P~ 371 (499)
T Consensus 259 Al~q~DiKkiiAyST~SQlG~M~~~~glg~~---~la~fHl~~HA~fKAlLFl~aG~vIh~~~~~qDir~mggl~~~~P~ 335 (571)
T MTH00165 259 ANFEFDLKKIIALSTLSQLGLMMSILSLGFY---KLAFFHLLTHALFKALLFMCAGVIIHSMGGSQDIRFMGGLSKSMPL 335 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCHH
T ss_conf 9976407789898789899999999980559---9999999999999999998332999972797308886696542469
Q ss_pred CCCCHHHHHHHHCCCHHHHHHCCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 3320134555530102444311228999999986--59999999999999999999999999728898765556878891
Q gi|254780866|r 372 YAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQN--SNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSL 449 (499)
Q Consensus 372 ~~~~~~i~~lsl~G~Pp~~GF~~k~~i~~~~~~~--~~~~~~~~~~~~~ls~~~~l~~~~~~~~g~~~~~~~~~~~~~~~ 449 (499)
T Consensus 336 t~~~~~i~~lsL~G~PflsGFySKD~IlE~~~~~~~~~~~~~~~~~~~~lT~~YS~Rl~~~~~~~~~~~~~~~~~~~~~~ 415 (571)
T MTH00165 336 TSSCFNVSNLALCGFPFLAGFYSKDLILEMVFMSNLNMFSFLLFIFSTGLTVSYSFRLMYYSMTGDFNLSSLNNLSDESY 415 (571)
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCH
T ss_conf 99999999999853505418988899999998744559999999999997899999999999818998987861888989
Q ss_pred CHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2689999999999999772488
Q gi|254780866|r 450 RERCMVYPIAVLTVFFGIYPVP 471 (499)
Q Consensus 450 ~~~~~~~~l~~~~i~lGi~p~~ 471 (499)
T Consensus 416 ~m~~pl~~L~~~si~~G~~~~~ 437 (571)
T MTH00165 416 IMLKSMILLLFMSIFGGSFLSW 437 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8999999999999999999999