HHsearch alignment for GI: 254780866 and conserved domain: MTH00198
>MTH00198 ND2 NADH dehydrogenase subunit 2; Provisional.
Probab=100.00 E-value=0 Score=417.61 Aligned_cols=362 Identities=17% Similarity=0.279 Sum_probs=289.1
Q ss_pred CCHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCCEEEEEECCCC-------CC--CCCCCHHHHHHHHHHHHH
Q ss_conf 100235678999863024302654043311123431034312355312343-------32--321000113554455677
Q gi|254780866|r 108 QENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-------ER--IYAAYKFFLYTFFGSIFM 178 (499)
Q Consensus 108 ~~~~~~f~~llll~~~~~~~~~~s~dl~~l~v~~El~~l~~~~Li~~~~~~-------~~--~~aa~ky~i~~~~~s~~l 178 (499)
T Consensus 169 ~~~~~~~~~lvliv~l~~lllv~s~nwlsiyla~elqtl~lfil~a~~~~~~~~~~~~~~~~~EAGLKYFVLGAlSSGll 248 (596)
T MTH00198 169 ERGPGSGFALVLIVGLGGLLLIESANWLTIYLALEFQTLALFILAGESSEPRRLPSGASNTPPESGLKYWILGAMSSGFY 248 (596)
T ss_pred CCCCCCCEEHHHHHHHCCHHHEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 76888761000788642424200101899999999888899998750356554566557898552026675757777589
Q ss_pred HHHHHHHHHHHCCCCHHHHH-H-HHCC-CHH--HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 66655443210001003443-2-1013-303--78999985410344455400023201010002222344333323223
Q gi|254780866|r 179 LFAIVVMCWEKKTSSIIDLY-A-MSKF-PFS--IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLK 253 (499)
Q Consensus 179 L~g~~~l~~~~gs~~~~~~~-~-~~~~-~~~--~~~~~~~ll~~g~~~K~~~~PfH~WlP~~y~~ap~~~salls~~~~k 253 (499)
T Consensus 249 LyGcSLiYGfTGst~~~~~i~s~~~~~~~~~l~~~~~G~vFI~vgLlFKlSAaPFHMWaPDVYEGaPT~VTaffA~v-PK 327 (596)
T MTH00198 249 LFGCALYFGFTGNEGMLGTILSATLETTNIELRQGSLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAII-PK 327 (596)
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHH-HH
T ss_conf 98799840277763116678763114444221111166999999999886137522668744489867899999987-99
Q ss_pred CCCCCCC-HHCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCHHHH
Q ss_conf 3321110-000111223310000000001222221221110000244322332100135402333104875422102345
Q gi|254780866|r 254 MGGYGCI-RFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQ 332 (499)
Q Consensus 254 ~g~~~l~-r~~~~l~~~~~~~~~~~l~~l~~~t~~~g~l~al~q~d~KrllAySsi~~~G~i~~~l~~~~~~~~~~~~~~ 332 (499)
T Consensus 328 iA~f~~l~rl~---------~~~~ill~~sIlSmiiGai~Ai~QtnIKRLLAYSSIgHmGfiL~Gla~Gt~EGIqasliY 398 (596)
T MTH00198 328 FTVYILLTSLV---------ITSKLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVSAGTYESLQASWTY 398 (596)
T ss_pred HHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 99999999999---------889999999999999999999878878899987215478999999872546669999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHH---------------------HCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHH
Q ss_conf 554210233303567777642---------------------00111100235565420233201345555301024443
Q gi|254780866|r 333 MLSHGLVSSALFFCVGVIYDR---------------------LHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSG 391 (499)
Q Consensus 333 ~~~h~~~k~~lFl~~g~i~~~---------------------~g~~~l~~l~Gl~~~~P~~~~~~~i~~lsl~G~Pp~~G 391 (499)
T Consensus 399 liIYiiM~Lg~FaiILsL~~~g~~~~~~r~~~~g~~~~~~n~~~ie~IsDLsGLsk~nPiLA~sLaI~LFSLAGIPPLAG 478 (596)
T MTH00198 399 AVTYLVSALASFTVICTLEEFGTRATTSRKDKQGAFGSPGNYNLVRRLVDLTILSRGQPYIAFSLAIVFLSLAGIPPLLG 478 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHH
T ss_conf 99999999899999998874044333323332100101235420001797652441291999999999997468971367
Q ss_pred HCCHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-C-----------------CCCCC
Q ss_conf 112289999999865--------999999999999999999999999972889876-5-----------------55687
Q gi|254780866|r 392 FIGEFLVIMSVFQNS--------NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCE-K-----------------VQQLK 445 (499)
Q Consensus 392 F~~k~~i~~~~~~~~--------~~~~~~~~~~~~ls~~~~l~~~~~~~~g~~~~~-~-----------------~~~~~ 445 (499)
T Consensus 479 FfaKfYIL~aaIk~~~s~~l~~yYllaiiaVl~SVIs~fYYlRIVKImYFd~~~pl~~~~~~~s~il~W~~il~~~~~~~ 558 (596)
T MTH00198 479 FLGKWFILVGSIKIAFSSSLSIYYLVALFAIICTCISAFYYIRIVATIYFNFTRPLIKTKTPLSFILTWESILKGGTSEA 558 (596)
T ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCC
T ss_conf 89999999999753113443306899999999887631013636668786267753334564146676898852565200
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8891268999999999999977248899999999
Q gi|254780866|r 446 DLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVP 479 (499)
Q Consensus 446 ~~~~~~~~~~~~l~~~~i~lGi~p~~~~~~~~~~ 479 (499)
T Consensus 559 ~~~~~ksilig~t~~~IlFl~i~P~~Ll~ith~A 592 (596)
T MTH00198 559 EPGGGKSILISIYMYFILFLIICPQPLLLISYEA 592 (596)
T ss_pred CCCCCCEEEEHHHHHHHHHHHHCCCHHHHHCCCC
T ss_conf 1576633421157899999997687999850224