HHsearch alignment for GI: 254780866 and conserved domain: MTH00198

>MTH00198 ND2 NADH dehydrogenase subunit 2; Provisional.
Probab=100.00  E-value=0  Score=417.61  Aligned_cols=362  Identities=17%  Similarity=0.279  Sum_probs=289.1

Q ss_pred             CCHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCCEEEEEECCCC-------CC--CCCCCHHHHHHHHHHHHH
Q ss_conf             100235678999863024302654043311123431034312355312343-------32--321000113554455677
Q gi|254780866|r  108 QENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-------ER--IYAAYKFFLYTFFGSIFM  178 (499)
Q Consensus       108 ~~~~~~f~~llll~~~~~~~~~~s~dl~~l~v~~El~~l~~~~Li~~~~~~-------~~--~~aa~ky~i~~~~~s~~l  178 (499)
T Consensus       169 ~~~~~~~~~lvliv~l~~lllv~s~nwlsiyla~elqtl~lfil~a~~~~~~~~~~~~~~~~~EAGLKYFVLGAlSSGll  248 (596)
T MTH00198        169 ERGPGSGFALVLIVGLGGLLLIESANWLTIYLALEFQTLALFILAGESSEPRRLPSGASNTPPESGLKYWILGAMSSGFY  248 (596)
T ss_pred             CCCCCCCEEHHHHHHHCCHHHEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             76888761000788642424200101899999999888899998750356554566557898552026675757777589


Q ss_pred             HHHHHHHHHHHCCCCHHHHH-H-HHCC-CHH--HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             66655443210001003443-2-1013-303--78999985410344455400023201010002222344333323223
Q gi|254780866|r  179 LFAIVVMCWEKKTSSIIDLY-A-MSKF-PFS--IQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLK  253 (499)
Q Consensus       179 L~g~~~l~~~~gs~~~~~~~-~-~~~~-~~~--~~~~~~~ll~~g~~~K~~~~PfH~WlP~~y~~ap~~~salls~~~~k  253 (499)
T Consensus       249 LyGcSLiYGfTGst~~~~~i~s~~~~~~~~~l~~~~~G~vFI~vgLlFKlSAaPFHMWaPDVYEGaPT~VTaffA~v-PK  327 (596)
T MTH00198        249 LFGCALYFGFTGNEGMLGTILSATLETTNIELRQGSLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAII-PK  327 (596)
T ss_pred             HHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHH-HH
T ss_conf             98799840277763116678763114444221111166999999999886137522668744489867899999987-99


Q ss_pred             CCCCCCC-HHCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCHHHH
Q ss_conf             3321110-000111223310000000001222221221110000244322332100135402333104875422102345
Q gi|254780866|r  254 MGGYGCI-RFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQ  332 (499)
Q Consensus       254 ~g~~~l~-r~~~~l~~~~~~~~~~~l~~l~~~t~~~g~l~al~q~d~KrllAySsi~~~G~i~~~l~~~~~~~~~~~~~~  332 (499)
T Consensus       328 iA~f~~l~rl~---------~~~~ill~~sIlSmiiGai~Ai~QtnIKRLLAYSSIgHmGfiL~Gla~Gt~EGIqasliY  398 (596)
T MTH00198        328 FTVYILLTSLV---------ITSKLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVSAGTYESLQASWTY  398 (596)
T ss_pred             HHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf             99999999999---------889999999999999999999878878899987215478999999872546669999999


Q ss_pred             HHHHHCCCCCCHHHHHHHHHH---------------------HCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHH
Q ss_conf             554210233303567777642---------------------00111100235565420233201345555301024443
Q gi|254780866|r  333 MLSHGLVSSALFFCVGVIYDR---------------------LHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSG  391 (499)
Q Consensus       333 ~~~h~~~k~~lFl~~g~i~~~---------------------~g~~~l~~l~Gl~~~~P~~~~~~~i~~lsl~G~Pp~~G  391 (499)
T Consensus       399 liIYiiM~Lg~FaiILsL~~~g~~~~~~r~~~~g~~~~~~n~~~ie~IsDLsGLsk~nPiLA~sLaI~LFSLAGIPPLAG  478 (596)
T MTH00198        399 AVTYLVSALASFTVICTLEEFGTRATTSRKDKQGAFGSPGNYNLVRRLVDLTILSRGQPYIAFSLAIVFLSLAGIPPLLG  478 (596)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHH
T ss_conf             99999999899999998874044333323332100101235420001797652441291999999999997468971367


Q ss_pred             HCCHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-C-----------------CCCCC
Q ss_conf             112289999999865--------999999999999999999999999972889876-5-----------------55687
Q gi|254780866|r  392 FIGEFLVIMSVFQNS--------NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCE-K-----------------VQQLK  445 (499)
Q Consensus       392 F~~k~~i~~~~~~~~--------~~~~~~~~~~~~ls~~~~l~~~~~~~~g~~~~~-~-----------------~~~~~  445 (499)
T Consensus       479 FfaKfYIL~aaIk~~~s~~l~~yYllaiiaVl~SVIs~fYYlRIVKImYFd~~~pl~~~~~~~s~il~W~~il~~~~~~~  558 (596)
T MTH00198        479 FLGKWFILVGSIKIAFSSSLSIYYLVALFAIICTCISAFYYIRIVATIYFNFTRPLIKTKTPLSFILTWESILKGGTSEA  558 (596)
T ss_pred             HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCC
T ss_conf             89999999999753113443306899999999887631013636668786267753334564146676898852565200


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             8891268999999999999977248899999999
Q gi|254780866|r  446 DLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSVP  479 (499)
Q Consensus       446 ~~~~~~~~~~~~l~~~~i~lGi~p~~~~~~~~~~  479 (499)
T Consensus       559 ~~~~~ksilig~t~~~IlFl~i~P~~Ll~ith~A  592 (596)
T MTH00198        559 EPGGGKSILISIYMYFILFLIICPQPLLLISYEA  592 (596)
T ss_pred             CCCCCCEEEEHHHHHHHHHHHHCCCHHHHHCCCC
T ss_conf             1576633421157899999997687999850224