HHsearch alignment for GI: 254780866 and conserved domain: MTH00199

>MTH00199 ND2 NADH dehydrogenase subunit 2; Provisional.
Probab=100.00  E-value=0  Score=545.89  Aligned_cols=386  Identities=20%  Similarity=0.327  Sum_probs=337.2

Q ss_pred             EEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCCEEEEEECCCC
Q ss_conf             65225889999999999999997520112100235678999863024302654043311123431034312355312343
Q gi|254780866|r   79 LGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS  158 (499)
Q Consensus        79 l~iD~ls~~f~~l~~~i~~l~~~ys~~~~~~~~~~f~~llll~~~~~~~~~~s~dl~~l~v~~El~~l~~~~Li~~~~~~  158 (499)
T Consensus        61 ~~~d~~~~~~k~~~~~~~~~~~~~---~~~~~~~e~~~l~L~~~~Gm~~~vss~dli~lfl~lEl~sl~~Y~L~~~~r~~  137 (454)
T MTH00199         61 LLINGWVLISKLIIIIGSISILLM---GLKESLFSVPVLILIVALGSLLLVSSINWLSIYLALELQTLSLFILVALKRDS  137 (454)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH---HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             347489999999999999999998---46656268999999999999999986269999999999999999999836898


Q ss_pred             -CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             -3232100011355445567766655443210001003443210133037899998541034445540002320101000
Q gi|254780866|r  159 -ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHV  237 (499)
Q Consensus       159 -~~~~aa~ky~i~~~~~s~~lL~g~~~l~~~~gs~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~K~~~~PfH~WlP~~y~  237 (499)
T Consensus       138 ~~s~eAalKYfilg~~~s~~lL~Gi~liY~~tGs~~~~~i~~~~~~-----~~g~~li~~gl~fK~a~~PfH~W~PDvYe  212 (454)
T MTH00199        138 AYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIQGINSLLSG-----DVGKILITISLLFKLSAAPFHMWAPDVYE  212 (454)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHCCCCCCHHHHHC
T ss_conf             5589999999999878899999999999999578049999998864-----57899999999999966323154157757


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCHHHHH
Q ss_conf             22223443333232233321110000111223310000000001222221221110000244322332100135402333
Q gi|254780866|r  238 QAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIG  317 (499)
Q Consensus       238 ~ap~~~salls~~~~k~g~~~l~r~~~~l~~~~~~~~~~~l~~l~~~t~~~g~l~al~q~d~KrllAySsi~~~G~i~~~  317 (499)
T Consensus       213 gaPt~vta~la-~~~Kia~~~~l~~~~~--------~~~il~~~~~lSmi~G~l~Al~Q~diKRlLAYSSIsh~Gyil~g  283 (454)
T MTH00199        213 GAPTITTALLA-TVPKIGVFSILVQIGP--------VTNVVLWCAVLSIIYGAIGALNQTKIKRLLAYSGIGHMGFILFG  283 (454)
T ss_pred             CCCHHHHHHHH-HHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             99789999999-9999999999999888--------99999999999999999999821436799999999899999999


Q ss_pred             HCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHCCHHH
Q ss_conf             10487542210234555421023330356777764200111100235565420233201345555301024443112289
Q gi|254780866|r  318 IFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFL  397 (499)
Q Consensus       318 l~~~~~~~~~~~~~~~~~h~~~k~~lFl~~g~i~~~~g~~~l~~l~Gl~~~~P~~~~~~~i~~lsl~G~Pp~~GF~~k~~  397 (499)
T Consensus       284 l~~~~~~g~~~~l~y~~~y~~~~~~~F~~i~~~~~--~~~~i~~l~GL~~~~P~~a~~~~i~~lSlaGiPP~~GF~~K~~  361 (454)
T MTH00199        284 VAIGSFESIQASLIYMIIYVIMSICSFSIILSLKL--RRGLIVELSGLSRKNPVMALTLALTFLSIAGIPPLAGFLSKWL  361 (454)
T ss_pred             HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf             99754578999999999999999999999999982--7526999874875489999999999999839741202999999


Q ss_pred             HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC-----CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999986599-99999999999999999999999728898765-----5568788912689999999999999772488
Q gi|254780866|r  398 VIMSVFQNSNT-VAVLASFGVVLSALYSLWLYRKVVFGVSKCEK-----VQQLKDLSLRERCMVYPIAVLTVFFGIYPVP  471 (499)
Q Consensus       398 i~~~~~~~~~~-~~~~~~~~~~ls~~~~l~~~~~~~~g~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~i~lGi~p~~  471 (499)
T Consensus       362 i~~a~i~~g~~~laii~vl~Svis~~YYlRiik~myF~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~ilf~~i~P~~  441 (454)
T MTH00199        362 ILLSGVSSGYYLICIVAVISSVIAGVYYVRVVQIIYFQADSPLLIWQKVLNREERLDLSKSILIGMTLFFILFLMISPNF  441 (454)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHCHHH
T ss_conf             99999986959999999999999999999999999508996202310000001355467899999999999998808099


Q ss_pred             HHHHHHHHHHHH
Q ss_conf             999999999999
Q gi|254780866|r  472 IRDTFSVPLSSI  483 (499)
Q Consensus       472 ~~~~~~~~~~~l  483 (499)
T Consensus       442 ll~~~~~~a~~L  453 (454)
T MTH00199        442 LLQITHDATIGL  453 (454)
T ss_pred             HHHHHHHHHHHC
T ss_conf             999999997644