HHsearch alignment for GI: 254780866 and conserved domain: MTH00200
>MTH00200 ND2 NADH dehydrogenase subunit 2; Provisional.
Probab=100.00 E-value=0 Score=413.42 Aligned_cols=307 Identities=19% Similarity=0.302 Sum_probs=263.9
Q ss_pred HHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 35678999863024302654043311123431034312355312343323210001135544556776665544321000
Q gi|254780866|r 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKT 191 (499)
Q Consensus 112 ~~f~~llll~~~~~~~~~~s~dl~~l~v~~El~~l~~~~Li~~~~~~~~~~aa~ky~i~~~~~s~~lL~g~~~l~~~~gs 191 (499)
T Consensus 4 ~~~~il~l~~~~g~~~~~~s~~l~~l~v~lEl~sl~~~~Li~~~~~~~s~eaa~KYfi~~~~~S~l~L~g~~~~~~~~g~ 83 (343)
T MTH00200 4 YISPLLILSMVLGTLLILSSSHWFFIWLGLEINTLAFIPLLAWQHHPRAVEATVKYFIIQAVASALLLFGGLLNAWSSGE 83 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 79999999999999999999899999999999999999999849985799999999999999999999999999999855
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCC
Q ss_conf 10034432101330378999985410344455400023201010002222344333323223332111000011122331
Q gi|254780866|r 192 SSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLAS 271 (499)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~K~~~~PfH~WlP~~y~~ap~~~salls~~~~k~g~~~l~r~~~~l~~~~~ 271 (499)
T Consensus 84 ~~~~~~~~---------~l~~~lil~gl~~K~g~fPfH~Wlpdvy~~~~~~~~~lls~-~~Ki~~~~~l~~~~~------ 147 (343)
T MTH00200 84 WGISELLG---------PLSETLILLAIALKLGLAPGHFWVPDVLQGLNLITGLILST-WQKLAPLALLTQLAS------ 147 (343)
T ss_pred HHHHHHHH---------HHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHH-HHHHHHHHHHHHHHH------
T ss_conf 33678988---------99999999999999740024878731743698899999999-999999999999873------
Q ss_pred CCCCCHHHCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 00000000012222212211100002443223321001354023331048754221023455542102333035677776
Q gi|254780866|r 272 QYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIY 351 (499)
Q Consensus 272 ~~~~~~l~~l~~~t~~~g~l~al~q~d~KrllAySsi~~~G~i~~~l~~~~~~~~~~~~~~~~~h~~~k~~lFl~~g~i~ 351 (499)
T Consensus 148 ~~~~~~l~~l~~lS~i~G~l~al~Q~~iKrllAYSSI~~~G~il~~l~~~~~~----~~~~~~~y~~~~~~l~~~----~ 219 (343)
T MTH00200 148 ELNSNILLLLGVLSALVGGWGGLNQTQLRKLLAFSSIAHLGWLLSGIVYGGLL----GLLYFLLYVILTLSLFLL----L 219 (343)
T ss_pred HCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH----H
T ss_conf 20158999999999999999998520202578653798899999999981899----999999999999999999----9
Q ss_pred HHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 42001111002355654202332013455553010244431122899999998659-99999999999999999999999
Q gi|254780866|r 352 DRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN-TVAVLASFGVVLSALYSLWLYRK 430 (499)
Q Consensus 352 ~~~g~~~l~~l~Gl~~~~P~~~~~~~i~~lsl~G~Pp~~GF~~k~~i~~~~~~~~~-~~~~~~~~~~~ls~~~~l~~~~~ 430 (499)
T Consensus 220 ~~~~~~~i~~l~gl~~~~p~~a~~~~i~~LSL~GiPP~~GF~~K~~i~~~~~~~~~~~l~~i~li~S~is~~yYlRi~~~ 299 (343)
T MTH00200 220 HTLNSTKINSLSFSLGKSPLLSMLLLLTLLSLGGLPPFTGFFLKWLILQELGKQNLVIVATLLLLGSLLSLFYYLRLSYV 299 (343)
T ss_pred HHHCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99668719877172101299999999999998402245359999999999998273999999999999999999999999
Q ss_pred HHCCCCCCCCCC
Q ss_conf 972889876555
Q gi|254780866|r 431 VVFGVSKCEKVQ 442 (499)
Q Consensus 431 ~~~g~~~~~~~~ 442 (499)
T Consensus 300 ~~~~~~~~~~~~ 311 (343)
T MTH00200 300 SLLTLSPQQIMS 311 (343)
T ss_pred HHHCCCCCCCCC
T ss_conf 998089999654