HHsearch alignment for GI: 254780866 and conserved domain: MTH00205

>MTH00205 ND4 NADH dehydrogenase subunit 4; Provisional.
Probab=100.00  E-value=0  Score=552.63  Aligned_cols=399  Identities=30%  Similarity=0.524  Sum_probs=365.3

Q ss_pred             CCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCCEE
Q ss_conf             5405466522588999999999999999752011210--02356789998630243026540433111234310343123
Q gi|254780866|r   73 YFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQE--NFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFV  150 (499)
Q Consensus        73 ~~~~~~l~iD~ls~~f~~l~~~i~~l~~~ys~~~~~~--~~~~f~~llll~~~~~~~~~~s~dl~~l~v~~El~~l~~~~  150 (499)
T Consensus        48 ~~is~~~~~D~lS~~li~Lt~~i~~l~~l~S~~~~~~~~~~~~f~~l~lll~~~li~~F~s~dll~FyiffE~~LIP~~l  127 (452)
T MTH00205         48 SSISSSFSVDSVSLPLIMLSFWISVLMILSSFFILKSSNNSSLFTVTVIMLCLILILSFSSDNLLLFYILFEASLIPTLI  127 (452)
T ss_pred             CCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             21348881017259999999999999999877998646205799999999999999999997899999999999999999


Q ss_pred             EEEECC-CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCC--CHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             553123-43323210001135544556776665544321000100344321013--303789999854103444554000
Q gi|254780866|r  151 IIGVWG-GSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKF--PFSIQYWMWIAFFCSFAIKIPMFP  227 (499)
Q Consensus       151 Li~~~~-~~~~~~aa~ky~i~~~~~s~~lL~g~~~l~~~~gs~~~~~~~~~~~~--~~~~~~~~~~ll~~g~~~K~~~~P  227 (499)
T Consensus       128 LI~~wG~~~er~~A~~~~~~yT~~gSl~lL~~i~~l~~~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~laF~vK~Plfp  207 (452)
T MTH00205        128 LIMVWGYQPERLQASMYMLLYTLFASLPLLIGIIFFSDLNFHSSMFFMMDMGIGWSSDLVLSLYWIFCMLAFLVKMPLYL  207 (452)
T ss_pred             HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             99870998789999999999999989999999999999929951999998876444168999999999999998601501


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCEECCCCCCCCCCC
Q ss_conf             23201010002222344333323223332111000011122331000000000122222122111000024432233210
Q gi|254780866|r  228 FHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSS  307 (499)
Q Consensus       228 fH~WlP~~y~~ap~~~salls~~~~k~g~~~l~r~~~~l~~~~~~~~~~~l~~l~~~t~~~g~l~al~q~d~KrllAySs  307 (499)
T Consensus       208 ~H~WLP~Ah~eAP~~~S~ilagvllK~G~ygl~R~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~al~Q~D~K~liAYSS  286 (452)
T MTH00205        208 THLWLPKAHVEAPVSGSMILAGVLLKLGGYGLIRVSMILYSV-NYKVSELFFSVSLLGGVMTSMICLRQSDLKSLIAYSS  286 (452)
T ss_pred             CCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             503073532539818999999999986188999998873045-8999999999999999999999999987889999943


Q ss_pred             CCCCCHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCH
Q ss_conf             01354023331048754221023455542102333035677776420011110023556542023320134555530102
Q gi|254780866|r  308 IAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLP  387 (499)
Q Consensus       308 i~~~G~i~~~l~~~~~~~~~~~~~~~~~h~~~k~~lFl~~g~i~~~~g~~~l~~l~Gl~~~~P~~~~~~~i~~lsl~G~P  387 (499)
T Consensus       287 vshmG~v~~g~~~~~~~g~~ga~~~mi~Hgl~s~~LF~lag~~y~r~~tR~i~~~~Gl~~~~P~~~~~~~l~~~~n~g~P  366 (452)
T MTH00205        287 VGHMGLMVVGVVSMTSWGYNGAIIMMVAHGLCSSGMFCLANNWYERSNSRSMMMTKGMLNIFPSLVLFWFLLFSCNMSAP  366 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             99981899999987299999999999999988899999751567444869988849838788999999999999987255


Q ss_pred             HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             44431122899999998659999999999999999999999999728898765556878891268999999999999977
Q gi|254780866|r  388 GTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGI  467 (499)
Q Consensus       388 p~~GF~~k~~i~~~~~~~~~~~~~~~~~~~~ls~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~lGi  467 (499)
T Consensus       367 p~~nF~gE~~i~~~~~~~~~~~~~~~~~~~~lsa~Ysl~l~~~~~~G~~~~-~~~~~~~~~~re~~~l~~h~~Pl~~l~l  445 (452)
T MTH00205        367 PSINLLSEIGLAMSLLSSSKVSGVPLALISFFVGVYSMYLYSQSSHGSVSS-QFSSFLEIKEVEYFVGALHWFPLFILIL  445 (452)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH-HHHCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             126199999999999998799999999999999999999999975699835-3003899726799999999999999998


Q ss_pred             HHHHHH
Q ss_conf             248899
Q gi|254780866|r  468 YPVPIR  473 (499)
Q Consensus       468 ~p~~~~  473 (499)
T Consensus       446 ~p~l~~  451 (452)
T MTH00205        446 VPKIFI  451 (452)
T ss_pred             HHHHHC
T ss_conf             488872