HHsearch alignment for GI: 254780866 and conserved domain: MTH00206

>MTH00206 ND4 NADH dehydrogenase subunit 4; Provisional.
Probab=100.00  E-value=0  Score=587.99  Aligned_cols=444  Identities=34%  Similarity=0.609  Sum_probs=381.2

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCEEEEEEEEHHHHH
Q ss_conf             99999999999998720355303579999999999999999999986308888189998631348540546652258899
Q gi|254780866|r    8 IVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHLGVDGISIL   87 (499)
Q Consensus         8 lii~lPll~~li~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~iD~ls~~   87 (499)
T Consensus         2 L~iiip~~~~~~~~~~~~----~~~~w~~~~~~~~~~~~~~~~~~~----~~~~--------~--~~~~~~~~~D~lS~~   63 (452)
T MTH00206          2 LKLILPYVMLIPMVLLCK----KKWLWRSTYVSSLLLALLVLLLWS----MNMS--------W--SSPNSYLSIDQVSAP   63 (452)
T ss_pred             HHHHHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHHHHHHHHHH----CCCC--------C--CHHHHHHHHHHHHHH
T ss_conf             548999999999999827----699999999999999999999872----3777--------0--103378855575799


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCCEEEEEECCC-CCCCC
Q ss_conf             9999999999999752011210----023567899986302430265404331112343103431235531234-33232
Q gi|254780866|r   88 LVVLTTFLTPFCILSSWKSIQE----NFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIY  162 (499)
Q Consensus        88 f~~l~~~i~~l~~~ys~~~~~~----~~~~f~~llll~~~~~~~~~~s~dl~~l~v~~El~~l~~~~Li~~~~~-~~~~~  162 (499)
T Consensus        64 l~~L~~~i~~l~~l~S~~~~~~~~~~~~~~f~~l~~~l~~~l~~~f~s~nl~~ffvf~E~~lip~~~LI~~wg~~~~r~~  143 (452)
T MTH00206         64 LVILSCWLLPLMLLASQQHMKKEPGSRQRIYIFCLIFLQLFLILAFLATDLLLFYIAFEATLIPTLLLITRWGAQKERLQ  143 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf             99999999999999989987408312789999999999999999999979999999999999999999997099889999


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             10001135544556776665544321000100344321013303789999854103444554000232010100022223
Q gi|254780866|r  163 AAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTA  242 (499)
Q Consensus       163 aa~ky~i~~~~~s~~lL~g~~~l~~~~gs~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~K~~~~PfH~WlP~~y~~ap~~  242 (499)
T Consensus       144 A~~~~~i~t~~gs~~lL~~i~~l~~~~gs~~~~~~~~~~~--~~~~~~~~~~~~l~f~vK~~~~pfH~WLP~Ah~eAP~~  221 (452)
T MTH00206        144 AGTYFLFYTLVGSLPLLIALLKLYNSLGSLSMPIILENLS--SYSDNFWWLACLLAFLVKLPLYGLHLWLPKAHVEAPIA  221 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCH
T ss_conf             9999999999999999999999998827148999998846--66899999999999999987861001068777889809


Q ss_pred             CCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCHHHHHHCCCC
Q ss_conf             44333323223332111000011122331000000000122222122111000024432233210013540233310487
Q gi|254780866|r  243 GSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGM  322 (499)
Q Consensus       243 ~salls~~~~k~g~~~l~r~~~~l~~~~~~~~~~~l~~l~~~t~~~g~l~al~q~d~KrllAySsi~~~G~i~~~l~~~~  322 (499)
T Consensus       222 ~S~iLagvllK~G~ygliR~~~~~~~-~~~~~~~~~~~l~~~~~~~~s~~al~Q~DlKrllAYSSishmG~i~~gl~~~~  300 (452)
T MTH00206        222 GSMVLAGVLLKLGGYGMMRLSQLLGP-STKLSSEPFLILGLWGMIVTSSICLRQTDLKSLIAYSSVSHMGLVAAGIMSGT  300 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             99999999999999999999871243-15899999999999999999999998733789999967999999999997378


Q ss_pred             CCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHCCHHHHHHHH
Q ss_conf             54221023455542102333035677776420011110023556542023320134555530102444311228999999
Q gi|254780866|r  323 KSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSV  402 (499)
Q Consensus       323 ~~~~~~~~~~~~~h~~~k~~lFl~~g~i~~~~g~~~l~~l~Gl~~~~P~~~~~~~i~~lsl~G~Pp~~GF~~k~~i~~~~  402 (499)
T Consensus       301 ~~g~~gal~~mi~Hgl~~~~LF~~~g~i~~~~~tr~i~~~~GL~~~~P~~~~~~~i~~ls~~GiPp~~gF~se~~i~~~~  380 (452)
T MTH00206        301 PWGFSGALMLMIAHGLVSSALFCLANLLYERSHTRTLLLNRGLQSIFPLMSFWWLLMFLANLALPPSINFFGELLIISSL  380 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_conf             88888889988999999999999988999334980299984558778999999999999987331205399999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             98659999999999999999999999999728898765556878891268999999999999977248899
Q gi|254780866|r  403 FQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIR  473 (499)
Q Consensus       403 ~~~~~~~~~~~~~~~~ls~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~lGi~p~~~~  473 (499)
T Consensus       381 ~~~~~~~~~~~~~~~~lsa~Y~l~l~~~~~~G~~~~-~~~~~~~~~~~e~~~~~~~~~p~~~l~~~p~~~~  450 (452)
T MTH00206        381 FSWSNWTILLLGLGVLLTAVYSLYMFVMTQHGPTSK-HLKNLSPSTTREHLLLFLHLLPYILLILFPELIL  450 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             998499999999999999999999999998599931-2514899837799999999999999998479860