HHsearch alignment for GI: 254780866 and conserved domain: MTH00206
>MTH00206 ND4 NADH dehydrogenase subunit 4; Provisional.
Probab=100.00 E-value=0 Score=587.99 Aligned_cols=444 Identities=34% Similarity=0.609 Sum_probs=381.2
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCEEEEEEEEHHHHH
Q ss_conf 99999999999998720355303579999999999999999999986308888189998631348540546652258899
Q gi|254780866|r 8 IVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHLGVDGISIL 87 (499)
Q Consensus 8 lii~lPll~~li~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~iD~ls~~ 87 (499)
T Consensus 2 L~iiip~~~~~~~~~~~~----~~~~w~~~~~~~~~~~~~~~~~~~----~~~~--------~--~~~~~~~~~D~lS~~ 63 (452)
T MTH00206 2 LKLILPYVMLIPMVLLCK----KKWLWRSTYVSSLLLALLVLLLWS----MNMS--------W--SSPNSYLSIDQVSAP 63 (452)
T ss_pred HHHHHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHHHHHHHHHH----CCCC--------C--CHHHHHHHHHHHHHH
T ss_conf 548999999999999827----699999999999999999999872----3777--------0--103378855575799
Q ss_pred HHHHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCCEEEEEECCC-CCCCC
Q ss_conf 9999999999999752011210----023567899986302430265404331112343103431235531234-33232
Q gi|254780866|r 88 LVVLTTFLTPFCILSSWKSIQE----NFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG-SERIY 162 (499)
Q Consensus 88 f~~l~~~i~~l~~~ys~~~~~~----~~~~f~~llll~~~~~~~~~~s~dl~~l~v~~El~~l~~~~Li~~~~~-~~~~~ 162 (499)
T Consensus 64 l~~L~~~i~~l~~l~S~~~~~~~~~~~~~~f~~l~~~l~~~l~~~f~s~nl~~ffvf~E~~lip~~~LI~~wg~~~~r~~ 143 (452)
T MTH00206 64 LVILSCWLLPLMLLASQQHMKKEPGSRQRIYIFCLIFLQLFLILAFLATDLLLFYIAFEATLIPTLLLITRWGAQKERLQ 143 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 99999999999999989987408312789999999999999999999979999999999999999999997099889999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 10001135544556776665544321000100344321013303789999854103444554000232010100022223
Q gi|254780866|r 163 AAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTA 242 (499)
Q Consensus 163 aa~ky~i~~~~~s~~lL~g~~~l~~~~gs~~~~~~~~~~~~~~~~~~~~~~ll~~g~~~K~~~~PfH~WlP~~y~~ap~~ 242 (499)
T Consensus 144 A~~~~~i~t~~gs~~lL~~i~~l~~~~gs~~~~~~~~~~~--~~~~~~~~~~~~l~f~vK~~~~pfH~WLP~Ah~eAP~~ 221 (452)
T MTH00206 144 AGTYFLFYTLVGSLPLLIALLKLYNSLGSLSMPIILENLS--SYSDNFWWLACLLAFLVKLPLYGLHLWLPKAHVEAPIA 221 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCH
T ss_conf 9999999999999999999999998827148999998846--66899999999999999987861001068777889809
Q ss_pred CCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCHHHHHHCCCC
Q ss_conf 44333323223332111000011122331000000000122222122111000024432233210013540233310487
Q gi|254780866|r 243 GSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGM 322 (499)
Q Consensus 243 ~salls~~~~k~g~~~l~r~~~~l~~~~~~~~~~~l~~l~~~t~~~g~l~al~q~d~KrllAySsi~~~G~i~~~l~~~~ 322 (499)
T Consensus 222 ~S~iLagvllK~G~ygliR~~~~~~~-~~~~~~~~~~~l~~~~~~~~s~~al~Q~DlKrllAYSSishmG~i~~gl~~~~ 300 (452)
T MTH00206 222 GSMVLAGVLLKLGGYGMMRLSQLLGP-STKLSSEPFLILGLWGMIVTSSICLRQTDLKSLIAYSSVSHMGLVAAGIMSGT 300 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999999999999999999871243-15899999999999999999999998733789999967999999999997378
Q ss_pred CCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHCCHHHHHHHH
Q ss_conf 54221023455542102333035677776420011110023556542023320134555530102444311228999999
Q gi|254780866|r 323 KSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSV 402 (499)
Q Consensus 323 ~~~~~~~~~~~~~h~~~k~~lFl~~g~i~~~~g~~~l~~l~Gl~~~~P~~~~~~~i~~lsl~G~Pp~~GF~~k~~i~~~~ 402 (499)
T Consensus 301 ~~g~~gal~~mi~Hgl~~~~LF~~~g~i~~~~~tr~i~~~~GL~~~~P~~~~~~~i~~ls~~GiPp~~gF~se~~i~~~~ 380 (452)
T MTH00206 301 PWGFSGALMLMIAHGLVSSALFCLANLLYERSHTRTLLLNRGLQSIFPLMSFWWLLMFLANLALPPSINFFGELLIISSL 380 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_conf 88888889988999999999999988999334980299984558778999999999999987331205399999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98659999999999999999999999999728898765556878891268999999999999977248899
Q gi|254780866|r 403 FQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIR 473 (499)
Q Consensus 403 ~~~~~~~~~~~~~~~~ls~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~lGi~p~~~~ 473 (499)
T Consensus 381 ~~~~~~~~~~~~~~~~lsa~Y~l~l~~~~~~G~~~~-~~~~~~~~~~~e~~~~~~~~~p~~~l~~~p~~~~ 450 (452)
T MTH00206 381 FSWSNWTILLLGLGVLLTAVYSLYMFVMTQHGPTSK-HLKNLSPSTTREHLLLFLHLLPYILLILFPELIL 450 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 998499999999999999999999999998599931-2514899837799999999999999998479860