HHsearch alignment for GI: 254780866 and conserved domain: MTH00210
>MTH00210 ND5 NADH dehydrogenase subunit 5; Provisional.
Probab=100.00 E-value=0 Score=608.26 Aligned_cols=457 Identities=21% Similarity=0.339 Sum_probs=391.1
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCC---CEEEEEEEEH
Q ss_conf 9999999999999987203553035799999999999999999999863088881899986313485---4054665225
Q gi|254780866|r 7 SIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDY---FCSYHLGVDG 83 (499)
Q Consensus 7 ~lii~lPll~~li~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~iD~ 83 (499)
T Consensus 3 lLii~lPLi~ali~~l~gr~~-~~~~~~~i~~~~~~~s~lls~~~~~~~~~~~~-~~~~~l~~w~~~~~~~~~~~~~~D~ 80 (618)
T MTH00210 3 ILVLFFPLLSAIISGLFGRKI-GTKGAGVLTSSCIVISAIVSCCIFYETTLNSS-VTYIKLWRWFDSELLTTYFGLQFDS 80 (618)
T ss_pred HHHHHHHHHHHHHHHHCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CEEEEEECCCCCCCCCEEEEEEEHH
T ss_conf 999999999999999807876-62179999999999999999999999834798-0799862053356767157755326
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCCEEEEEECCCC-CC
Q ss_conf 88999999999999999752011210--0235678999863024302654043311123431034312355312343-32
Q gi|254780866|r 84 ISILLVVLTTFLTPFCILSSWKSIQE--NFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-ER 160 (499)
Q Consensus 84 ls~~f~~l~~~i~~l~~~ys~~~~~~--~~~~f~~llll~~~~~~~~~~s~dl~~l~v~~El~~l~~~~Li~~~~~~-~~ 160 (499)
T Consensus 81 ls~~m~~~v~~is~lv~iYS~~Ym~~d~~~~rf~~~l~lf~~~Ml~lv~s~nl~~lfvgWE~vgl~SylLI~~~~~~~~a 160 (618)
T MTH00210 81 LTSTMLIVITSVSALVHIYSTGYMSGDPHIPRFMSYLSLFTFLMIVLVTSDNYVQLFIGWEGVGLCSYLLINFWLTRIKA 160 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_conf 38999999999999999999998168998028999999999999999997249999999999999999999750886889
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCC--CHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 3210001135544556776665544321000100344321013--30378999985410344455400023201010002
Q gi|254780866|r 161 IYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKF--PFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 (499)
Q Consensus 161 ~~aa~ky~i~~~~~s~~lL~g~~~l~~~~gs~~~~~~~~~~~~--~~~~~~~~~~ll~~g~~~K~~~~PfH~WlP~~y~~ 238 (499)
T Consensus 161 ~~aa~ka~i~nrvGd~~lllgi~~l~~~~Gtl~~~~l~~~~~~~~~~~~~~~i~~ll~iga~~KsAqfPlh~WLPdAm-~ 239 (618)
T MTH00210 161 NKAAIKAMLVNRVGDIGLVLAMIKILKEFGSLEFSTIYSLLSLVINKESITIICLLLFVGAVGKSAQLGLHTWLPDAM-E 239 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH-C
T ss_conf 999999999997879999999999999967861999999987402764599999999999999845065465226774-5
Q ss_pred CCCCCCCCCC-CCCCCCCCCCCCHHCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCHHHHH
Q ss_conf 2223443333-232233321110000111223310000000001222221221110000244322332100135402333
Q gi|254780866|r 239 APTAGSVFLA-GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIG 317 (499)
Q Consensus 239 ap~~~salls-~~~~k~g~~~l~r~~~~l~~~~~~~~~~~l~~l~~~t~~~g~l~al~q~d~KrllAySsi~~~G~i~~~ 317 (499)
T Consensus 240 aPTPVSALlhaatmV~aGvyll~R~~-~l~~-~~~~~~~~v~~~G~~T~~~~~~~Al~Q~DiKrilAySTiSQlGym~~~ 317 (618)
T MTH00210 240 GPTPVSALIHAATMVTAGVFLIIRSG-PLFE-GSPLALTIVTILGALTAFFAATVGVVQNDLKKVIAYSTCSQLGYMVMV 317 (618)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHH-HHHH-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89961499999999998999885541-7753-178999999999999999999999978637788643159888899999
Q ss_pred HCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHC-CCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHCCHH
Q ss_conf 10487542210234555421023330356777764200-11110023556542023320134555530102444311228
Q gi|254780866|r 318 IFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLH-TRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEF 396 (499)
Q Consensus 318 l~~~~~~~~~~~~~~~~~h~~~k~~lFl~~g~i~~~~g-~~~l~~l~Gl~~~~P~~~~~~~i~~lsl~G~Pp~~GF~~k~ 396 (499)
T Consensus 318 ~gl~~---~~~a~fHl~~Ha~fKalLFL~aG~vih~~~~~qdi~~mgGL~~~mP~t~~~~~i~~lsl~G~P~~sGF~SKd 394 (618)
T MTH00210 318 CGLSN---YSTSLFHLMNHAFFKALLFLSAGSVIHAVSDEQDMRKMGGLIKSIPFTYVMILIGSLSLMGFPYLTGFYSKD 394 (618)
T ss_pred HHHCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHCHHHHHH
T ss_conf 86145---889999999899999999981349887537733998818853457589999999999982560313041189
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC--CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999986599--99999999999999999999999728898765--5568788912689999999999999772488
Q gi|254780866|r 397 LVIMSVFQNSNT--VAVLASFGVVLSALYSLWLYRKVVFGVSKCEK--VQQLKDLSLRERCMVYPIAVLTVFFGIYPVP 471 (499)
Q Consensus 397 ~i~~~~~~~~~~--~~~~~~~~~~ls~~~~l~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~l~~~~i~lGi~p~~ 471 (499)
T Consensus 395 ~ile~~~~~~~~~~~~~~~~~~~~lT~~Ys~r~~~~~f~~~~~~~~~~~~~~he~~~~m~~Pl~~La~~sv~~G~~~~~ 473 (618)
T MTH00210 395 LILELVYDKYYIAFAYWLGSFSALLTAFYSIRLIYLTFITNTNSKKEVLMGVHESSWNITIPLVLLAFGSIFVGYLGKE 473 (618)
T ss_pred HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999998762799999999999999999999999987337999987666678888789999999999999999989988