HHsearch alignment for GI: 254780866 and conserved domain: MTH00211

>MTH00211 ND5 NADH dehydrogenase subunit 5; Provisional.
Probab=100.00  E-value=0  Score=548.36  Aligned_cols=400  Identities=21%  Similarity=0.350  Sum_probs=352.9

Q ss_pred             EEEEECC---CCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHHCCCEEEEECCCCCHHH
Q ss_conf             9863134---854054665225889999999999999997520112--10023567899986302430265404331112
Q gi|254780866|r   65 IEYYHWI---DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSI--QENFREYMIAFLVLESMVIGAFLSLDMLLFYI  139 (499)
Q Consensus        65 ~~~~~~~---~~~~~~~l~iD~ls~~f~~l~~~i~~l~~~ys~~~~--~~~~~~f~~llll~~~~~~~~~~s~dl~~l~v  139 (499)
T Consensus        55 ~~~~~w~~~~~~~i~~~~~~D~~S~~f~~~v~~is~~V~~yS~~YM~~d~~~~rF~~~l~lF~~sMl~Lv~s~Nl~~l~i  134 (595)
T MTH00211         55 LTGWEWLNLGGFSLNLSFRYDFYSIFFFVVALYVTWSILEFSLWYMSTDPNVNRFFKYLLLFLISMLILVSANNLFQLLI  134 (595)
T ss_pred             EEEEECCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             88615114488472765115830899999999999999999688737899957899999999999999999836999999


Q ss_pred             HHHHCCCCCEEEEEECCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHCC
Q ss_conf             3431034312355312343-323210001135544556776665544321000100344321013303789999854103
Q gi|254780866|r  140 FFEASLIPMFVIIGVWGGS-ERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCS  218 (499)
Q Consensus       140 ~~El~~l~~~~Li~~~~~~-~~~~aa~ky~i~~~~~s~~lL~g~~~l~~~~gs~~~~~~~~~~~~~~~~~~~~~~ll~~g  218 (499)
T Consensus       135 gWEgvgl~SylLI~~~~~r~~a~~aa~~a~i~nriGd~~lll~i~~l~~~~~s~~~~~i~~~~---~~~~~~~~~~l~la  211 (595)
T MTH00211        135 GWEGVGIMSFLLISWWYGRSDANTAALQAIIYNRIGDIGLILSMFWLLMNLNSWTMQQLFILS---DMVNTLPLLGFLLA  211 (595)
T ss_pred             HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHC---CHHHHHHHHHHHHH
T ss_conf             999999999998923189589999999999999389999999999999992772499998636---43889999999999


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCHHCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCEEC
Q ss_conf             44455400023201010002222344333-32322333211100001112233100000000012222212211100002
Q gi|254780866|r  219 FAIKIPMFPFHTWLPNAHVQAPTAGSVFL-AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQT  297 (499)
Q Consensus       219 ~~~K~~~~PfH~WlP~~y~~ap~~~sall-s~~~~k~g~~~l~r~~~~l~~~~~~~~~~~l~~l~~~t~~~g~l~al~q~  297 (499)
T Consensus       212 a~~KSAQfPlh~WLP~A-M~aPTPVSALlHsstmV~AGvylliR~~-~~~~-~~~~~~~~~l~lG~lT~l~a~~~Al~q~  288 (595)
T MTH00211        212 AMGKSAQFGLHPWLPAA-MEGPTPVSALLHSSTMVVAGVFLLIRLS-PLIL-NNFLVLGAVLCLGALTTLFAALCALTQN  288 (595)
T ss_pred             HHHHHCCCCCCHHHHHH-HCCCCCHHHHHHHHHHHHCCHHHEECCC-HHHH-HCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99874316572545876-0699928999987589980631001105-2744-1789999999999999999999998777


Q ss_pred             CCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHH-CCCCCCHHHHHHHHHHCCCCCH
Q ss_conf             443223321001354023331048754221023455542102333035677776420-0111100235565420233201
Q gi|254780866|r  298 DIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRL-HTRDIFAYGGLVHNMPRYAVVM  376 (499)
Q Consensus       298 d~KrllAySsi~~~G~i~~~l~~~~~~~~~~~~~~~~~h~~~k~~lFl~~g~i~~~~-g~~~l~~l~Gl~~~~P~~~~~~  376 (499)
T Consensus       289 DiKkilAyST~SQlG~M~~aiglg~~---~~a~fHl~~HA~fKalLFL~aG~iIh~~~~~qDir~mGgl~~~mP~t~~~~  365 (595)
T MTH00211        289 DMKKIVAFSTTSQLGLMVVALGLGQP---QLAFLHICTHAFFKAMLFLCSGSIIHSLNNEQDIRKMGGLSKALPFTSSCL  365 (595)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHH
T ss_conf             78788874269888899999876589---999999997899999999831288774477137987079887638999999


Q ss_pred             HHHHHHHCCCHHHHHHCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf             345555301024443112289999999865--999999999999999999999999972889876555687889126899
Q gi|254780866|r  377 MVFTMANMGLPGTSGFIGEFLVIMSVFQNS--NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCM  454 (499)
Q Consensus       377 ~i~~lsl~G~Pp~~GF~~k~~i~~~~~~~~--~~~~~~~~~~~~ls~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  454 (499)
T Consensus       366 ~ig~lsL~G~P~lsGF~SKD~IlE~~~~s~~n~~~l~l~liat~lTa~YS~Rli~~v~~~~~~~~~~~~~~e~~~~~~~P  445 (595)
T MTH00211        366 IIGSLALMGFPFLAGFFSKDSILENMNMSNLNSWALLLTLLATSLTAAYSLRLIYLSLGGNPRMLPLSPINEENNSLKNP  445 (595)
T ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHH
T ss_conf             99999984676002251168999999866246999999999999999999999999994898899888888998899999


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999977248899
Q gi|254780866|r  455 VYPIAVLTVFFGIYPVPIR  473 (499)
Q Consensus       455 ~~~l~~~~i~lGi~p~~~~  473 (499)
T Consensus       446 l~~La~~Si~~G~~~~~~~  464 (595)
T MTH00211        446 LKRLAYGSIIGGVFFTLFL  464 (595)
T ss_pred             HHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999999888