HHsearch alignment for GI: 254780866 and conserved domain: PRK05777
>PRK05777 NADH dehydrogenase subunit N; Provisional.
Probab=100.00 E-value=0 Score=633.25 Aligned_cols=466 Identities=21% Similarity=0.353 Sum_probs=394.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCEEEEEE
Q ss_conf 98307899999999999999872035530357999999999999999999998630888818999863134854054665
Q gi|254780866|r 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHLG 80 (499)
Q Consensus 1 m~~p~l~lii~lPll~~li~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (499)
T Consensus 6 ~~~-~~llP~lill~~al~~ll~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~ 71 (478)
T PRK05777 6 LNL-QLLLPELILLIGALALLLVDLFIGRRNRRLT--ATLAVAGLVVALVSLLFVASGGTGVA-----------FNGMFV 71 (478)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH--HHHHHHHHHHHHHHHHHHCCCCCHHH-----------HCCEEE
T ss_conf 109-9999999999999999999997540336899--99999999999999999807875203-----------120147
Q ss_pred EEHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCCEEEEEECCCC-C
Q ss_conf 225889999999999999997520112100235678999863024302654043311123431034312355312343-3
Q gi|254780866|r 81 VDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGS-E 159 (499)
Q Consensus 81 iD~ls~~f~~l~~~i~~l~~~ys~~~~~~~~~~f~~llll~~~~~~~~~~s~dl~~l~v~~El~~l~~~~Li~~~~~~-~ 159 (499)
T Consensus 72 vD~ls~~~~~l~~~~~~~~~l~s~~~~~~~~~~f~~l~l~~~~g~~~~~~s~dl~~l~v~~El~sl~~y~Li~~~~~~~~ 151 (478)
T PRK05777 72 VDGFALFLKGLILLASALTLVLAREYLKDRNGEFYLLVLFAVLGMMVMVSANDLLTLFLGLELLSLPLYALAALRRDRRR 151 (478)
T ss_pred ECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
T ss_conf 75678999999999999999999999866776599999999999999999836999999999999999987987279889
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 23210001135544556776665544321000100344321013---303789999854103444554000232010100
Q gi|254780866|r 160 RIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKF---PFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAH 236 (499)
Q Consensus 160 ~~~aa~ky~i~~~~~s~~lL~g~~~l~~~~gs~~~~~~~~~~~~---~~~~~~~~~~ll~~g~~~K~~~~PfH~WlP~~y 236 (499)
T Consensus 152 s~eAa~ky~l~~~~~s~~lL~gi~~ly~~tGs~~~~~l~~~~~~~~~~~~~~~~~~~l~l~g~~~K~a~~PfH~WlPday 231 (478)
T PRK05777 152 SLEAAIKYFVLGALASGFLLYGMSLLYGATGSLSLAGIAKALADGMLNSLLLLFGLVFLLAGLAFKLSAVPFHMWTPDVY 231 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH
T ss_conf 99999999999799999999999999988199749999998753665418999999999999998727376561414363
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCHHHH
Q ss_conf 02222344333323223332111000011122331000000000122222122111000024432233210013540233
Q gi|254780866|r 237 VQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTI 316 (499)
Q Consensus 237 ~~ap~~~salls~~~~k~g~~~l~r~~~~l~~~~~~~~~~~l~~l~~~t~~~g~l~al~q~d~KrllAySsi~~~G~i~~ 316 (499)
T Consensus 232 ~~APt~vsa~ls~~~k~a~~~~l~r~~~~~~~~~~~~~~~~l~~l~~~s~~~g~l~Al~Q~d~KRlLAYSsIs~~G~il~ 311 (478)
T PRK05777 232 EGAPTPVTAFLATAPKIAAFAVLLRLFYVAFGPLSEDWQQVLAIIAILSMIVGNLAAISQTNIKRLLAYSSIAHMGFLLV 311 (478)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 58981687898889999999999999998615447999999999999999999999998860647887679864639999
Q ss_pred HHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCC-CCCCHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHCCH
Q ss_conf 3104875422102345554210233303567777642001-111002355654202332013455553010244431122
Q gi|254780866|r 317 GIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHT-RDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGE 395 (499)
Q Consensus 317 ~l~~~~~~~~~~~~~~~~~h~~~k~~lFl~~g~i~~~~g~-~~l~~l~Gl~~~~P~~~~~~~i~~lsl~G~Pp~~GF~~k 395 (499)
T Consensus 312 gi~~~~~~~~~~~~~~~~~h~~~~~~lF~~~~~l~~~~~~~~~i~~l~Gl~~~~P~~a~~~~i~~lsl~GiPp~~GF~~K 391 (478)
T PRK05777 312 GLAAGTVAGYSAAMFYLLAYLFMTLGAFGVILLLSRKGFEAESIDDFAGLNKRSPVLAAVMTIFMLSLAGIPPTAGFWGK 391 (478)
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHH
T ss_conf 99972688999999999999999999999999999657970309986432324938999999999998088521308899
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89999999865-99999999999999999999999997288987655568788912689999999999999772488999
Q gi|254780866|r 396 FLVIMSVFQNS-NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRD 474 (499)
Q Consensus 396 ~~i~~~~~~~~-~~~~~~~~~~~~ls~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~lGi~p~~~~~ 474 (499)
T Consensus 392 ~~i~~~~~~~~~~~l~~~~~~~s~is~~Yylri~~~~f~~~~~~~~~---~~~~~~~~~~~~i~a~~~i~~Gi~P~~ll~ 468 (478)
T PRK05777 392 FYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLRVIKVMYFDEPEGEPR---DAPSNLRLVVLSVSALLVLVLGILPQPLLD 468 (478)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999748499999999999999999999999993289985446---788715899999999999999953799999
Q ss_pred HHHHHHHHH
Q ss_conf 999999999
Q gi|254780866|r 475 TFSVPLSSI 483 (499)
Q Consensus 475 ~~~~~~~~l 483 (499)
T Consensus 469 ~~~~aa~~l 477 (478)
T PRK05777 469 LAVQAARLL 477 (478)
T ss_pred HHHHHHHHH
T ss_conf 999999974