HHsearch alignment for GI: 254780866 and conserved domain: PRK06458
>PRK06458 hydrogenase 4 subunit F; Validated.
Probab=100.00 E-value=0 Score=646.87 Aligned_cols=467 Identities=25% Similarity=0.411 Sum_probs=406.0
Q ss_pred CCC-CHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCEEEEE
Q ss_conf 983-0789999999999999987203553035799999999999999999999863088881899986313485405466
Q gi|254780866|r 1 MNL-PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHL 79 (499)
Q Consensus 1 m~~-p~l~lii~lPll~~li~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 79 (499)
T Consensus 1 m~~~~ll~llvliPli~all~~l~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-----------~~~~~ 65 (491)
T PRK06458 1 MSYSILLALLLLIPLLASLLLFACRK----RRLAARLNVLGITLTLILALWLVQTVVDAGEIFA-----------AGLWF 65 (491)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCC----CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE-----------CCEEE
T ss_conf 98669999999999999999999378----5289999999999999999999999825786000-----------24034
Q ss_pred EEEHHHHHHHHHHHHHHHHHHHHHCCCCCC----------HHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCCE
Q ss_conf 522588999999999999999752011210----------0235678999863024302654043311123431034312
Q gi|254780866|r 80 GVDGISILLVVLTTFLTPFCILSSWKSIQE----------NFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMF 149 (499)
Q Consensus 80 ~iD~ls~~f~~l~~~i~~l~~~ys~~~~~~----------~~~~f~~llll~~~~~~~~~~s~dl~~l~v~~El~~l~~~ 149 (499)
T Consensus 66 ~~D~ls~~~~~l~~~i~~~~~lys~~y~~~~~~~~~~~~~~~~~y~~l~ll~~~g~~g~~~s~dl~~~~vf~El~~i~sy 145 (491)
T PRK06458 66 HVDDLNVLFLALTGFVGFLTSLYSIGYMRHEVEHGELSPVRLRLYYGMYQLFLFTMLLALTSNNLGLMWVAIEATTLSSV 145 (491)
T ss_pred EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 45176799999999999999999889986403103334214769999999999999999998189999999999999999
Q ss_pred EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH---------HCCCHHHHHHHHHHHHCCCC
Q ss_conf 355312343323210001135544556776665544321000100344321---------01330378999985410344
Q gi|254780866|r 150 VIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAM---------SKFPFSIQYWMWIAFFCSFA 220 (499)
Q Consensus 150 ~Li~~~~~~~~~~aa~ky~i~~~~~s~~lL~g~~~l~~~~gs~~~~~~~~~---------~~~~~~~~~~~~~ll~~g~~ 220 (499)
T Consensus 146 ~Li~~~~~~~~~~Aa~ky~i~~~~gs~~~L~gi~~ly~~~gtl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~l~g~~ 225 (491)
T PRK06458 146 LLVGIYRTRASLEAAWKYFILCSVGIAFALFGTILVYAAAATVMGDGEDAMLWTVLLAVASLLDPTLMSLAFVFLLIGFG 225 (491)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 99996796899999999999999999999999999999999886205788888889876322453799999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCC-CCCCCCCHHHCCCCCCCCCCCCCCCEECCC
Q ss_conf 4554000232010100022223443333232233321110000111223-310000000001222221221110000244
Q gi|254780866|r 221 IKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPL-ASQYFAPVIFFLSLIAIIYASLVSMVQTDI 299 (499)
Q Consensus 221 ~K~~~~PfH~WlP~~y~~ap~~~salls~~~~k~g~~~l~r~~~~l~~~-~~~~~~~~l~~l~~~t~~~g~l~al~q~d~ 299 (499)
T Consensus 226 ~K~a~~PfH~WlPday~~aPt~vSalls~v~~k~g~y~llr~~~~~~~~~~~~~~~~~l~~lg~lsii~g~l~Al~Q~dl 305 (491)
T PRK06458 226 TKVGLFPMHAWLPDAHSEAPSPVSAVLSGVLLNVALYALLRYYIIIDAAIGSDFPGRLLLIFGLLSVLVAAFFLLRQRDI 305 (491)
T ss_pred HHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_conf 88562526688505756088438999999999999999999999861202579999999999999999999999998376
Q ss_pred CCCCCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHH
Q ss_conf 32233210013540233310487542210234555421023330356777764200111100235565420233201345
Q gi|254780866|r 300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVF 379 (499)
Q Consensus 300 KrllAySsi~~~G~i~~~l~~~~~~~~~~~~~~~~~h~~~k~~lFl~~g~i~~~~g~~~l~~l~Gl~~~~P~~~~~~~i~ 379 (499)
T Consensus 306 KrlLAYSsIsq~G~i~~gi~~~~~~~~~~al~~~i~h~l~k~~LFl~~g~i~~~~g~~~i~~l~Gl~~~~P~~~~~~~i~ 385 (491)
T PRK06458 306 KRLFAYSSIEHMGLITFAFGIGGPLGNFAALLHMLNHSLTKSAIFFASGNVLQKYGTQDINVIRGLLKVMPFTGWGLMLG 385 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHHHCCHHHHHHHHHHHHHHH
T ss_conf 68999999999999999999588789999999999999999899999999999859806998719798839999999999
Q ss_pred HHHHCCCHHHHHHCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 555301024443112289999999865-9999999999999999999999999728898765556878891268999999
Q gi|254780866|r 380 TMANMGLPGTSGFIGEFLVIMSVFQNS-NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPI 458 (499)
Q Consensus 380 ~lsl~G~Pp~~GF~~k~~i~~~~~~~~-~~~~~~~~~~~~ls~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l 458 (499)
T Consensus 386 ~lsl~GiPp~~GF~~K~~i~~~~~~~~~~~l~~~~~~~s~l~~~y~~~~~~~~~fg~~~~~~--~~~~~~~~~~~~~~il 463 (491)
T PRK06458 386 VLAIAGMPPFGVFISEFLILTAGLARGHPWLAILLLLLLTLAFAALVRRVTGMVFGEPPQAV--NRGDLGWLTLLPMFIH 463 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC--CCCCCCHHHHHHHHHH
T ss_conf 99999887997899999999999981879999999999999999999999998418999766--8899978799999999
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHH
Q ss_conf 9999999772-4889999999999998
Q gi|254780866|r 459 AVLTVFFGIY-PVPIRDTFSVPLSSII 484 (499)
Q Consensus 459 ~~~~i~lGi~-p~~~~~~~~~~~~~l~ 484 (499)
T Consensus 464 ~~~~i~~Gl~~p~pl~~~~~~~a~~~~ 490 (491)
T PRK06458 464 LVLMLVLGLYLPPPLVRWLQHAATIVL 490 (491)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHC
T ss_conf 999999997274899999999999847