HHsearch alignment for GI: 254780866 and conserved domain: PRK06458

>PRK06458 hydrogenase 4 subunit F; Validated.
Probab=100.00  E-value=0  Score=646.87  Aligned_cols=467  Identities=25%  Similarity=0.411  Sum_probs=406.0

Q ss_pred             CCC-CHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCEEEEE
Q ss_conf             983-0789999999999999987203553035799999999999999999999863088881899986313485405466
Q gi|254780866|r    1 MNL-PFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHL   79 (499)
Q Consensus         1 m~~-p~l~lii~lPll~~li~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   79 (499)
T Consensus         1 m~~~~ll~llvliPli~all~~l~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-----------~~~~~   65 (491)
T PRK06458          1 MSYSILLALLLLIPLLASLLLFACRK----RRLAARLNVLGITLTLILALWLVQTVVDAGEIFA-----------AGLWF   65 (491)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHCC----CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE-----------CCEEE
T ss_conf             98669999999999999999999378----5289999999999999999999999825786000-----------24034


Q ss_pred             EEEHHHHHHHHHHHHHHHHHHHHHCCCCCC----------HHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCCE
Q ss_conf             522588999999999999999752011210----------0235678999863024302654043311123431034312
Q gi|254780866|r   80 GVDGISILLVVLTTFLTPFCILSSWKSIQE----------NFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMF  149 (499)
Q Consensus        80 ~iD~ls~~f~~l~~~i~~l~~~ys~~~~~~----------~~~~f~~llll~~~~~~~~~~s~dl~~l~v~~El~~l~~~  149 (499)
T Consensus        66 ~~D~ls~~~~~l~~~i~~~~~lys~~y~~~~~~~~~~~~~~~~~y~~l~ll~~~g~~g~~~s~dl~~~~vf~El~~i~sy  145 (491)
T PRK06458         66 HVDDLNVLFLALTGFVGFLTSLYSIGYMRHEVEHGELSPVRLRLYYGMYQLFLFTMLLALTSNNLGLMWVAIEATTLSSV  145 (491)
T ss_pred             EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             45176799999999999999999889986403103334214769999999999999999998189999999999999999


Q ss_pred             EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH---------HCCCHHHHHHHHHHHHCCCC
Q ss_conf             355312343323210001135544556776665544321000100344321---------01330378999985410344
Q gi|254780866|r  150 VIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAM---------SKFPFSIQYWMWIAFFCSFA  220 (499)
Q Consensus       150 ~Li~~~~~~~~~~aa~ky~i~~~~~s~~lL~g~~~l~~~~gs~~~~~~~~~---------~~~~~~~~~~~~~ll~~g~~  220 (499)
T Consensus       146 ~Li~~~~~~~~~~Aa~ky~i~~~~gs~~~L~gi~~ly~~~gtl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~l~g~~  225 (491)
T PRK06458        146 LLVGIYRTRASLEAAWKYFILCSVGIAFALFGTILVYAAAATVMGDGEDAMLWTVLLAVASLLDPTLMSLAFVFLLIGFG  225 (491)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf             99996796899999999999999999999999999999999886205788888889876322453799999999999999


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCC-CCCCCCCHHHCCCCCCCCCCCCCCCEECCC
Q ss_conf             4554000232010100022223443333232233321110000111223-310000000001222221221110000244
Q gi|254780866|r  221 IKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPL-ASQYFAPVIFFLSLIAIIYASLVSMVQTDI  299 (499)
Q Consensus       221 ~K~~~~PfH~WlP~~y~~ap~~~salls~~~~k~g~~~l~r~~~~l~~~-~~~~~~~~l~~l~~~t~~~g~l~al~q~d~  299 (499)
T Consensus       226 ~K~a~~PfH~WlPday~~aPt~vSalls~v~~k~g~y~llr~~~~~~~~~~~~~~~~~l~~lg~lsii~g~l~Al~Q~dl  305 (491)
T PRK06458        226 TKVGLFPMHAWLPDAHSEAPSPVSAVLSGVLLNVALYALLRYYIIIDAAIGSDFPGRLLLIFGLLSVLVAAFFLLRQRDI  305 (491)
T ss_pred             HHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_conf             88562526688505756088438999999999999999999999861202579999999999999999999999998376


Q ss_pred             CCCCCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHH
Q ss_conf             32233210013540233310487542210234555421023330356777764200111100235565420233201345
Q gi|254780866|r  300 KKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVF  379 (499)
Q Consensus       300 KrllAySsi~~~G~i~~~l~~~~~~~~~~~~~~~~~h~~~k~~lFl~~g~i~~~~g~~~l~~l~Gl~~~~P~~~~~~~i~  379 (499)
T Consensus       306 KrlLAYSsIsq~G~i~~gi~~~~~~~~~~al~~~i~h~l~k~~LFl~~g~i~~~~g~~~i~~l~Gl~~~~P~~~~~~~i~  385 (491)
T PRK06458        306 KRLFAYSSIEHMGLITFAFGIGGPLGNFAALLHMLNHSLTKSAIFFASGNVLQKYGTQDINVIRGLLKVMPFTGWGLMLG  385 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHHHCCHHHHHHHHHHHHHHH
T ss_conf             68999999999999999999588789999999999999999899999999999859806998719798839999999999


Q ss_pred             HHHHCCCHHHHHHCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             555301024443112289999999865-9999999999999999999999999728898765556878891268999999
Q gi|254780866|r  380 TMANMGLPGTSGFIGEFLVIMSVFQNS-NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPI  458 (499)
Q Consensus       380 ~lsl~G~Pp~~GF~~k~~i~~~~~~~~-~~~~~~~~~~~~ls~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l  458 (499)
T Consensus       386 ~lsl~GiPp~~GF~~K~~i~~~~~~~~~~~l~~~~~~~s~l~~~y~~~~~~~~~fg~~~~~~--~~~~~~~~~~~~~~il  463 (491)
T PRK06458        386 VLAIAGMPPFGVFISEFLILTAGLARGHPWLAILLLLLLTLAFAALVRRVTGMVFGEPPQAV--NRGDLGWLTLLPMFIH  463 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC--CCCCCCHHHHHHHHHH
T ss_conf             99999887997899999999999981879999999999999999999999998418999766--8899978799999999


Q ss_pred             HHHHHHHHHH-HHHHHHHHHHHHHHHH
Q ss_conf             9999999772-4889999999999998
Q gi|254780866|r  459 AVLTVFFGIY-PVPIRDTFSVPLSSII  484 (499)
Q Consensus       459 ~~~~i~lGi~-p~~~~~~~~~~~~~l~  484 (499)
T Consensus       464 ~~~~i~~Gl~~p~pl~~~~~~~a~~~~  490 (491)
T PRK06458        464 LVLMLVLGLYLPPPLVRWLQHAATIVL  490 (491)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHC
T ss_conf             999999997274899999999999847