HHsearch alignment for GI: 254780866 and conserved domain: PRK08377
>PRK08377 NADH dehydrogenase subunit N; Validated.
Probab=100.00 E-value=0 Score=682.86 Aligned_cols=483 Identities=22% Similarity=0.377 Sum_probs=415.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCEEEEEE
Q ss_conf 98307899999999999999872035530357999999999999999999998630888818999863134854054665
Q gi|254780866|r 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHLG 80 (499)
Q Consensus 1 m~~p~l~lii~lPll~~li~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (499)
T Consensus 1 M~~-l~sLlI~lPli~A~l~~ll~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~-~~~~~~~W~~~-~gi~~~ 75 (493)
T PRK08377 1 MSQ-VASLLIALPLISAFFVPVLKGIG--KSLIMPYLVLITLLQTGIAGWVFYEVYTTGKP-IIIMAGGWKPP-VGINLY 75 (493)
T ss_pred CCH-HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-EEEEECCCCCC-CCEEEE
T ss_conf 974-88999999999999999986330--68999999999999999999999998158981-79983175786-370778
Q ss_pred EEHHHHHHHHHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCCEEEEEECCCCC
Q ss_conf 225889999999999999997520112100-2356789998630243026540433111234310343123553123433
Q gi|254780866|r 81 VDGISILLVVLTTFLTPFCILSSWKSIQEN-FREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSE 159 (499)
Q Consensus 81 iD~ls~~f~~l~~~i~~l~~~ys~~~~~~~-~~~f~~llll~~~~~~~~~~s~dl~~l~v~~El~~l~~~~Li~~~~~~~ 159 (499)
T Consensus 76 ~d~ls~~~~ll~~~v~~~~~~ys~~~~~~~~~~~~~~l~ll~~~g~~g~~~s~Dl~~lfvf~E~~~i~sy~Li~~~~~~~ 155 (493)
T PRK08377 76 IGHFAALFVLIIAVVSFFTALFSFRAVKVEPIDKYAMLFLLLMLGATGMIATGDIFNLFVFMEITAITAYALTAYNKTGE 155 (493)
T ss_pred ECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
T ss_conf 88554899999999999999999988436862409999999999999999981699999999999999999999879889
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCC-CHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 23210001135544556776665544321000100344321013-30378999985410344455400023201010002
Q gi|254780866|r 160 RIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKF-PFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238 (499)
Q Consensus 160 ~~~aa~ky~i~~~~~s~~lL~g~~~l~~~~gs~~~~~~~~~~~~-~~~~~~~~~~ll~~g~~~K~~~~PfH~WlP~~y~~ 238 (499)
T Consensus 156 ~~~Aa~ky~i~~~~gs~~~L~gi~lly~~~Gt~~~~~l~~~~~~~~~~~~~~~~~l~~~gf~~K~~~fPfH~WlPday~~ 235 (493)
T PRK08377 156 AAEASMKYIVLGGIGSSFFLIGVALIYGATGTLNMAHLAQLAAAIDPTVAQVGLALIIFGLAVEAELFPLNAWAPDAYQA 235 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCC
T ss_conf 99999999999999999999999999998089759999998624573899999999999999885706107774454446
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCC-CCCCCCHHHCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCHHHHH
Q ss_conf 22234433332322333211100001112233-10000000001222221221110000244322332100135402333
Q gi|254780866|r 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFPLA-SQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIG 317 (499)
Q Consensus 239 ap~~~salls~~~~k~g~~~l~r~~~~l~~~~-~~~~~~~l~~l~~~t~~~g~l~al~q~d~KrllAySsi~~~G~i~~~ 317 (499)
T Consensus 236 apt~vsalls~~~~k~g~y~l~R~~~~~~~~~~~~~~~~~l~~l~~~t~~~G~~~Al~Q~dlKrllAYSsIsq~G~i~lg 315 (493)
T PRK08377 236 APHPITVMFSAFVVKAGLYAMARILYLLQKVNGWSSVLKLLIIMATLTVVFAELSALRQKDVKRMIAYSSIGQVGLIALA 315 (493)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_conf 89860788889999999999999999732301269999999999999999999999985055099999899999999999
Q ss_pred HCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHCCHHH
Q ss_conf 10487542210234555421023330356777764200111100235565420233201345555301024443112289
Q gi|254780866|r 318 IFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFL 397 (499)
Q Consensus 318 l~~~~~~~~~~~~~~~~~h~~~k~~lFl~~g~i~~~~g~~~l~~l~Gl~~~~P~~~~~~~i~~lsl~G~Pp~~GF~~k~~ 397 (499)
T Consensus 316 i~~~~~~g~~~a~~~l~~h~~~k~~lFl~~g~i~~~~g~~~l~~l~GL~~~~P~~a~~~~i~~lsl~GiPp~~GF~~K~~ 395 (493)
T PRK08377 316 FSLGTQAGVDAGVFHMLNHAIVKAMMFLAVGYVGITLGGTEIENFQGLGKRMPLTALALTIGAVATVGVPLFNVFWSKFR 395 (493)
T ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99577989999999999999999999999999999838875999659786628999999999999998877646999999
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999865-9999999999999999999999999728898765556878891268999999999999977248899999
Q gi|254780866|r 398 VIMSVFQNS-NTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTF 476 (499)
Q Consensus 398 i~~~~~~~~-~~~~~~~~~~~~ls~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~lGi~p~~~~~~~ 476 (499)
T Consensus 396 i~~aa~~~~~~~~~~~~~i~svis~~Y~lr~i~~~ff~~~~~~~~~------~~~~~~~~~l~~~~i~lGi~P~p~~~~~ 469 (493)
T PRK08377 396 IILATLQAGYTWPAALVLFASVVEAVYYFRLIHTMWFEGEGERIKE------GWIGVFLLLLAALIVVIGVYPTPVWEIV 469 (493)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC------CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999998396999999999999999999999999942888755540------0289999999999999996379899999
Q ss_pred HHHHHHHHHHCCCHHHHHCCCC
Q ss_conf 9999999852020022201367
Q gi|254780866|r 477 SVPLSSIIENYTLKTGYSDSVK 498 (499)
Q Consensus 477 ~~~~~~l~~~~~~~~~~~~~~~ 498 (499)
T Consensus 470 ~~aa~~l~d----~~~yi~~v~ 487 (493)
T PRK08377 470 KKAGSDIFN----VANYVKNVP 487 (493)
T ss_pred HHHHHHHCC----HHHHHHHCC
T ss_conf 999998709----797851117